Miyakogusa Predicted Gene

Lj1g3v0203190.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0203190.1 Non Characterized Hit- tr|Q84P89|Q84P89_ORYSJ
Putative uncharacterized protein (Fragment) OS=Oryza
s,41.98,2e-19,coiled-coil,NULL; seg,NULL,CUFF.25346.1
         (144 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g065930.1 | MADS box interactor-like protein, putative | H...   154   3e-38
Medtr5g065930.2 | MADS box interactor-like protein, putative | H...   154   3e-38

>Medtr5g065930.1 | MADS box interactor-like protein, putative | HC |
           chr5:27762394-27757492 | 20130731
          Length = 223

 Score =  154 bits (389), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 83/134 (61%), Positives = 91/134 (67%), Gaps = 7/134 (5%)

Query: 18  KRKTLQAVLEQCQRALELIN------NAXXXXXXXXXXXXXXXXXXXXXXXXXXQLCDLL 71
           KRKTLQ VLEQCQRALELIN                                  QLCDLL
Sbjct: 14  KRKTLQTVLEQCQRALELINASSDDDADDDDENDDVSDSNQQPLPSTPPDPEADQLCDLL 73

Query: 72  KSRVECPDFLQKLECAQASVLLNAAEEGNSWDLVSENDLWEGSEL-DQEDFVLVRQEDIV 130
           KSR+ECPDFL KLECAQASV  N  EEGNSWDL+SENDLWEG +  D+ED+VLVRQ+DIV
Sbjct: 74  KSRLECPDFLDKLECAQASVYQNTTEEGNSWDLISENDLWEGVDTSDEEDYVLVRQDDIV 133

Query: 131 EGIACFLAAYLLSL 144
           +GIACF+AAYLLSL
Sbjct: 134 DGIACFMAAYLLSL 147


>Medtr5g065930.2 | MADS box interactor-like protein, putative | HC |
           chr5:27762394-27757515 | 20130731
          Length = 197

 Score =  154 bits (389), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 83/134 (61%), Positives = 91/134 (67%), Gaps = 7/134 (5%)

Query: 18  KRKTLQAVLEQCQRALELIN------NAXXXXXXXXXXXXXXXXXXXXXXXXXXQLCDLL 71
           KRKTLQ VLEQCQRALELIN                                  QLCDLL
Sbjct: 14  KRKTLQTVLEQCQRALELINASSDDDADDDDENDDVSDSNQQPLPSTPPDPEADQLCDLL 73

Query: 72  KSRVECPDFLQKLECAQASVLLNAAEEGNSWDLVSENDLWEGSEL-DQEDFVLVRQEDIV 130
           KSR+ECPDFL KLECAQASV  N  EEGNSWDL+SENDLWEG +  D+ED+VLVRQ+DIV
Sbjct: 74  KSRLECPDFLDKLECAQASVYQNTTEEGNSWDLISENDLWEGVDTSDEEDYVLVRQDDIV 133

Query: 131 EGIACFLAAYLLSL 144
           +GIACF+AAYLLSL
Sbjct: 134 DGIACFMAAYLLSL 147