Miyakogusa Predicted Gene

Lj1g3v0180960.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0180960.1 tr|I3S8P2|I3S8P2_LOTJA Transcription initiation
factor IIA subunit 2 OS=Lotus japonicus PE=3
SV=1,100,1.4013e-45,Transcription factor IIA (TFIIA), alpha-helical
domain,Transcription factor IIA, helical; Transcript,CUFF.25338.1
         (89 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g005540.1 | transcription initiation factor IIA subunit 2 ...   187   2e-48
Medtr5g066740.1 | transcription initiation factor IIA subunit 2 ...   167   3e-42
Medtr7g005540.2 | transcription initiation factor IIA subunit 2 ...   120   2e-28

>Medtr7g005540.1 | transcription initiation factor IIA subunit 2 |
          HC | chr7:163397-159540 | 20130731
          Length = 106

 Score =  187 bits (474), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 88/89 (98%), Positives = 89/89 (100%)

Query: 1  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALETQVKSKVSIK 60
          MATFELYRRSTIGMCLTETLDEMVQNGTLSPE+AIQVLVQFDKSMTEALETQVKSKVSIK
Sbjct: 1  MATFELYRRSTIGMCLTETLDEMVQNGTLSPEIAIQVLVQFDKSMTEALETQVKSKVSIK 60

Query: 61 GHLHTYRFCDNVWTFILQDALFKNEDNQE 89
          GHLHTYRFCDNVWTFILQDALFKNEDNQE
Sbjct: 61 GHLHTYRFCDNVWTFILQDALFKNEDNQE 89


>Medtr5g066740.1 | transcription initiation factor IIA subunit 2 |
          HC | chr5:28195526-28191844 | 20130731
          Length = 112

 Score =  167 bits (422), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 76/89 (85%), Positives = 86/89 (96%)

Query: 1  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALETQVKSKVSIK 60
          MATFELYRRSTIG CLT+TLD++VQNGTLSP+ AI++L+QFDKS+TEALET+VKSKVSIK
Sbjct: 7  MATFELYRRSTIGQCLTDTLDDLVQNGTLSPDHAIKILIQFDKSVTEALETKVKSKVSIK 66

Query: 61 GHLHTYRFCDNVWTFILQDALFKNEDNQE 89
          GHLHTYRFCDNVWTFILQDALFK+ED QE
Sbjct: 67 GHLHTYRFCDNVWTFILQDALFKSEDKQE 95


>Medtr7g005540.2 | transcription initiation factor IIA subunit 2 |
          HC | chr7:163396-160378 | 20130731
          Length = 78

 Score =  120 bits (302), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 59/60 (98%), Positives = 60/60 (100%)

Query: 1  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALETQVKSKVSIK 60
          MATFELYRRSTIGMCLTETLDEMVQNGTLSPE+AIQVLVQFDKSMTEALETQVKSKVSIK
Sbjct: 1  MATFELYRRSTIGMCLTETLDEMVQNGTLSPEIAIQVLVQFDKSMTEALETQVKSKVSIK 60