Miyakogusa Predicted Gene

Lj1g3v0178870.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0178870.1 Non Characterized Hit- tr|B9SMY7|B9SMY7_RICCO
Lyase, putative OS=Ricinus communis GN=RCOM_0482760
PE,54.05,9e-18,seg,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL; Rhamnogal_lyase,Rhamnogalacturonate lyase,CUFF.25334.1
         (136 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g066770.1 | rhamnogalacturonate lyase B-like protein | HC ...   213   4e-56
Medtr3g111410.1 | rhamnogalacturonate lyase B-like protein | HC ...   166   7e-42
Medtr3g111420.1 | rhamnogalacturonate lyase B-like protein | HC ...   152   1e-37
Medtr3g111380.1 | rhamnogalacturonate lyase B-like protein | HC ...   138   1e-33
Medtr8g068110.1 | rhamnogalacturonate lyase B-like protein | HC ...   112   9e-26
Medtr8g068110.2 | rhamnogalacturonate lyase B-like protein | HC ...   112   9e-26
Medtr8g068110.3 | rhamnogalacturonate lyase B-like protein | HC ...   109   6e-25
Medtr8g068160.1 | rhamnogalacturonate lyase B-like protein | HC ...   107   4e-24
Medtr8g068120.1 | rhamnogalacturonate lyase B-like protein | HC ...   106   6e-24
Medtr5g031170.1 | rhamnogalacturonate lyase B-like protein | LC ...   100   6e-22
Medtr3g111380.4 | rhamnogalacturonate lyase B-like protein | HC ...    85   2e-17
Medtr3g111380.2 | rhamnogalacturonate lyase B-like protein | HC ...    85   2e-17
Medtr3g111380.5 | rhamnogalacturonate lyase B-like protein | HC ...    57   3e-09
Medtr3g111380.3 | rhamnogalacturonate lyase B-like protein | HC ...    57   3e-09

>Medtr5g066770.1 | rhamnogalacturonate lyase B-like protein | HC |
           chr5:28213045-28205323 | 20130731
          Length = 644

 Score =  213 bits (542), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 103/136 (75%), Positives = 111/136 (81%)

Query: 1   MDNGILQVQFSNPGGFITRIQYNGIDNLLEVLNDSNNRGYWDLVWSKAGSTGTTGTQERI 60
           MDNGI+QV  SNPGGF+TRIQYNGIDNLLE LN+ NNRGYWD+VWS+ GSTGTTGT ERI
Sbjct: 17  MDNGIVQVYLSNPGGFVTRIQYNGIDNLLEALNEKNNRGYWDVVWSEYGSTGTTGTFERI 76

Query: 61  VGRRFXXXXXXXXXXXXXFTKMWDPSQKGNLSPLNIDERYVMLRNSSGFYSYAIFEHLKE 120
           VG  F             F + W+PS KG LSPLNID+RYVMLRNSSGFYSYAIFEHLKE
Sbjct: 77  VGTSFNVIMETEEQVEISFKRTWNPSLKGKLSPLNIDKRYVMLRNSSGFYSYAIFEHLKE 136

Query: 121 WPAFNIPQIRIVYKLR 136
           WPAFNIPQIRIVYKLR
Sbjct: 137 WPAFNIPQIRIVYKLR 152


>Medtr3g111410.1 | rhamnogalacturonate lyase B-like protein | HC |
           chr3:52066382-52061130 | 20130731
          Length = 648

 Score =  166 bits (419), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 79/136 (58%), Positives = 96/136 (70%)

Query: 1   MDNGILQVQFSNPGGFITRIQYNGIDNLLEVLNDSNNRGYWDLVWSKAGSTGTTGTQERI 60
           MDNGIL+V  SNP G +T IQY+ IDNLLEVLN+ +NRGYWDLVWS   STGTTG  + I
Sbjct: 17  MDNGILRVTLSNPEGIVTGIQYSDIDNLLEVLNEESNRGYWDLVWSSPTSTGTTGKFDVI 76

Query: 61  VGRRFXXXXXXXXXXXXXFTKMWDPSQKGNLSPLNIDERYVMLRNSSGFYSYAIFEHLKE 120
               F             FT+ WD S +G L PLNID+R++MLR  SGFYSYAI+EHL++
Sbjct: 77  KATTFKVILEDEDQVELSFTRTWDASLEGKLVPLNIDKRFIMLRGCSGFYSYAIYEHLED 136

Query: 121 WPAFNIPQIRIVYKLR 136
           WPAFN+ + RI +KLR
Sbjct: 137 WPAFNLDETRIAFKLR 152


>Medtr3g111420.1 | rhamnogalacturonate lyase B-like protein | HC |
           chr3:52074737-52067719 | 20130731
          Length = 652

 Score =  152 bits (383), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 74/136 (54%), Positives = 89/136 (65%), Gaps = 3/136 (2%)

Query: 1   MDNGILQVQFSNPGGFITRIQYNGIDNLLEVLNDSNNRGYWDLVWSKAGSTGTTGTQERI 60
           MDNGI+QV  SNP G +T I+YNG+DNLLEVLN   NRGYWDLVWS  GS G     + I
Sbjct: 35  MDNGIVQVTLSNPDGIVTGIRYNGVDNLLEVLNKETNRGYWDLVWSAPGSKGIF---DVI 91

Query: 61  VGRRFXXXXXXXXXXXXXFTKMWDPSQKGNLSPLNIDERYVMLRNSSGFYSYAIFEHLKE 120
            G  F             F + WDPS +G   PLNID+R+++LR SSGFYSY I+EHL  
Sbjct: 92  KGTCFEVIVQNEDQVELSFKRTWDPSLEGKFVPLNIDKRFILLRGSSGFYSYGIYEHLPR 151

Query: 121 WPAFNIPQIRIVYKLR 136
           WP F+I + RI +KLR
Sbjct: 152 WPDFDISETRITFKLR 167


>Medtr3g111380.1 | rhamnogalacturonate lyase B-like protein | HC |
           chr3:52050562-52046728 | 20130731
          Length = 648

 Score =  138 bits (348), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 66/142 (46%), Positives = 91/142 (64%), Gaps = 6/142 (4%)

Query: 1   MDNGILQVQFSNPGGFITRIQYNGIDNLLEVLNDSNNRGYWDLVWSKAGSTGTTGTQ--- 57
           +DN I+QV  SNP G +T IQYNG+DNLLE+ N  ++RGYWD+VW + G   T       
Sbjct: 19  IDNDIVQVNISNPEGCVTGIQYNGLDNLLEINNHESDRGYWDIVWDQGGEKRTKKGAKGK 78

Query: 58  ---ERIVGRRFXXXXXXXXXXXXXFTKMWDPSQKGNLSPLNIDERYVMLRNSSGFYSYAI 114
              +R+                  FT+ W+ S +G L+PLNID+R++MLR SSGFY+YAI
Sbjct: 79  GKLDRLETTNMRVIMESEEQVELSFTRTWNLSLEGKLAPLNIDKRFIMLRGSSGFYTYAI 138

Query: 115 FEHLKEWPAFNIPQIRIVYKLR 136
           ++HLKEWPAF++   R+ +KLR
Sbjct: 139 YDHLKEWPAFDLDNTRVAFKLR 160


>Medtr8g068110.1 | rhamnogalacturonate lyase B-like protein | HC |
           chr8:28379463-28387444 | 20130731
          Length = 684

 Score =  112 bits (280), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 58/135 (42%), Positives = 77/135 (57%), Gaps = 3/135 (2%)

Query: 1   MDNGILQVQFSNPGGFITRIQYNGIDNLLEVLNDSNNRGYWDLVWSKAGSTGTTGTQERI 60
           +DNGI+ V  S P G +  I YNGIDN+LE  ND ++RGY+D+VW++ G   T    +RI
Sbjct: 66  IDNGIVSVTLSRPEGHVIAISYNGIDNILESENDEDDRGYFDVVWNEVGKPSTF---QRI 122

Query: 61  VGRRFXXXXXXXXXXXXXFTKMWDPSQKGNLSPLNIDERYVMLRNSSGFYSYAIFEHLKE 120
            G  F             F + W  S  G   P+NID+RY+     SGFYSYAIF+  + 
Sbjct: 123 EGTNFSVIAADENMVEVSFLRSWTSSMSGKDVPINIDKRYIFRSGDSGFYSYAIFDRPEG 182

Query: 121 WPAFNIPQIRIVYKL 135
            PA  + QIR V+KL
Sbjct: 183 MPAVEVDQIRYVFKL 197


>Medtr8g068110.2 | rhamnogalacturonate lyase B-like protein | HC |
           chr8:28379567-28387444 | 20130731
          Length = 684

 Score =  112 bits (280), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 58/135 (42%), Positives = 77/135 (57%), Gaps = 3/135 (2%)

Query: 1   MDNGILQVQFSNPGGFITRIQYNGIDNLLEVLNDSNNRGYWDLVWSKAGSTGTTGTQERI 60
           +DNGI+ V  S P G +  I YNGIDN+LE  ND ++RGY+D+VW++ G   T    +RI
Sbjct: 66  IDNGIVSVTLSRPEGHVIAISYNGIDNILESENDEDDRGYFDVVWNEVGKPSTF---QRI 122

Query: 61  VGRRFXXXXXXXXXXXXXFTKMWDPSQKGNLSPLNIDERYVMLRNSSGFYSYAIFEHLKE 120
            G  F             F + W  S  G   P+NID+RY+     SGFYSYAIF+  + 
Sbjct: 123 EGTNFSVIAADENMVEVSFLRSWTSSMSGKDVPINIDKRYIFRSGDSGFYSYAIFDRPEG 182

Query: 121 WPAFNIPQIRIVYKL 135
            PA  + QIR V+KL
Sbjct: 183 MPAVEVDQIRYVFKL 197


>Medtr8g068110.3 | rhamnogalacturonate lyase B-like protein | HC |
           chr8:28379569-28387444 | 20130731
          Length = 693

 Score =  109 bits (273), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 58/141 (41%), Positives = 78/141 (55%), Gaps = 6/141 (4%)

Query: 1   MDNGILQVQFSNPGGFITRIQYNGIDNLLEVLNDSNNRGYWDLVWSKAGSTGT------T 54
           +DNGI+ V  S P G +  I YNGIDN+LE  ND ++RGY+D+VW++ G   T       
Sbjct: 66  IDNGIVSVTLSRPEGHVIAISYNGIDNILESENDEDDRGYFDVVWNEVGKPSTFQRYNSF 125

Query: 55  GTQERIVGRRFXXXXXXXXXXXXXFTKMWDPSQKGNLSPLNIDERYVMLRNSSGFYSYAI 114
            ++ RI G  F             F + W  S  G   P+NID+RY+     SGFYSYAI
Sbjct: 126 PSKIRIEGTNFSVIAADENMVEVSFLRSWTSSMSGKDVPINIDKRYIFRSGDSGFYSYAI 185

Query: 115 FEHLKEWPAFNIPQIRIVYKL 135
           F+  +  PA  + QIR V+KL
Sbjct: 186 FDRPEGMPAVEVDQIRYVFKL 206


>Medtr8g068160.1 | rhamnogalacturonate lyase B-like protein | HC |
           chr8:28415254-28408214 | 20130731
          Length = 685

 Score =  107 bits (266), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 56/135 (41%), Positives = 76/135 (56%), Gaps = 3/135 (2%)

Query: 1   MDNGILQVQFSNPGGFITRIQYNGIDNLLEVLNDSNNRGYWDLVWSKAGSTGTTGTQERI 60
           +DNGI+ V  S P G++  I YNGIDN+LE     + RGY+D+VW++ G  G     +RI
Sbjct: 67  VDNGIVSVTLSKPEGYLIGISYNGIDNILESEYKEHARGYFDVVWNELGKHGKV---QRI 123

Query: 61  VGRRFXXXXXXXXXXXXXFTKMWDPSQKGNLSPLNIDERYVMLRNSSGFYSYAIFEHLKE 120
            G +F             F + W  S  G   P+NID RY+  R  SGFYSYAIF+  + 
Sbjct: 124 HGTKFSVIVANENMVEVSFLRSWTSSMTGIDVPINIDIRYIFRRGDSGFYSYAIFDRHEG 183

Query: 121 WPAFNIPQIRIVYKL 135
            PA  + QIR V++L
Sbjct: 184 MPAVKVDQIRFVFRL 198


>Medtr8g068120.1 | rhamnogalacturonate lyase B-like protein | HC |
           chr8:28388856-28396258 | 20130731
          Length = 687

 Score =  106 bits (265), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 56/136 (41%), Positives = 76/136 (55%), Gaps = 1/136 (0%)

Query: 1   MDNGILQVQFSNPGGFITRIQYNGIDNLLEVLNDSNNRGYWDLVWSKAGSTG-TTGTQER 59
           +DNGI+ V  + P G+I  I YNGIDN+L+  N   +RGY+D+VW++ G    +  T +R
Sbjct: 75  VDNGIVSVSMARPEGYILGISYNGIDNVLDSENQELDRGYFDVVWNEPGEQNLSKSTFQR 134

Query: 60  IVGRRFXXXXXXXXXXXXXFTKMWDPSQKGNLSPLNIDERYVMLRNSSGFYSYAIFEHLK 119
           I G  F             F+++W  S  G   P+NID RY+     SGFYSYAIF   K
Sbjct: 135 IHGTNFSVIAADENMVEVSFSRLWTHSMSGKNVPINIDIRYIFRSGDSGFYSYAIFNRPK 194

Query: 120 EWPAFNIPQIRIVYKL 135
             P   + QIR V+KL
Sbjct: 195 GMPGIEVDQIRFVFKL 210


>Medtr5g031170.1 | rhamnogalacturonate lyase B-like protein | LC |
           chr5:13365305-13370811 | 20130731
          Length = 672

 Score =  100 bits (248), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 48/136 (35%), Positives = 79/136 (58%), Gaps = 8/136 (5%)

Query: 1   MDNGILQVQFSNPGGFITRIQYNGIDNLLEVLNDSNNRGYWDLVWSKAGSTGTTGTQERI 60
           + NGI+ +  +NPGG++  I Y G++N+LE  N++++RGY+D+V+ K        T +R+
Sbjct: 58  ISNGIMSLTLANPGGYVLGISYAGMENVLEAGNEADDRGYFDVVFGK--------TFQRV 109

Query: 61  VGRRFXXXXXXXXXXXXXFTKMWDPSQKGNLSPLNIDERYVMLRNSSGFYSYAIFEHLKE 120
            G  F             F + W  S   +  P+NID+RY++ +  SGFY+Y +FE  K 
Sbjct: 110 HGTSFSVVTQNEHIVEVSFLRAWSSSMGVSSVPINIDQRYIVRKGDSGFYTYVVFERPKG 169

Query: 121 WPAFNIPQIRIVYKLR 136
           +PA  + QIR V+K +
Sbjct: 170 FPAIKVDQIRTVFKPK 185


>Medtr3g111380.4 | rhamnogalacturonate lyase B-like protein | HC |
           chr3:52050786-52046530 | 20130731
          Length = 569

 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 35/58 (60%), Positives = 49/58 (84%)

Query: 79  FTKMWDPSQKGNLSPLNIDERYVMLRNSSGFYSYAIFEHLKEWPAFNIPQIRIVYKLR 136
           FT+ W+ S +G L+PLNID+R++MLR SSGFY+YAI++HLKEWPAF++   R+ +KLR
Sbjct: 24  FTRTWNLSLEGKLAPLNIDKRFIMLRGSSGFYTYAIYDHLKEWPAFDLDNTRVAFKLR 81


>Medtr3g111380.2 | rhamnogalacturonate lyase B-like protein | HC |
           chr3:52050786-52046530 | 20130731
          Length = 560

 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 35/58 (60%), Positives = 49/58 (84%)

Query: 79  FTKMWDPSQKGNLSPLNIDERYVMLRNSSGFYSYAIFEHLKEWPAFNIPQIRIVYKLR 136
           FT+ W+ S +G L+PLNID+R++MLR SSGFY+YAI++HLKEWPAF++   R+ +KLR
Sbjct: 15  FTRTWNLSLEGKLAPLNIDKRFIMLRGSSGFYTYAIYDHLKEWPAFDLDNTRVAFKLR 72


>Medtr3g111380.5 | rhamnogalacturonate lyase B-like protein | HC |
           chr3:52050786-52046530 | 20130731
          Length = 523

 Score = 57.4 bits (137), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 23/35 (65%), Positives = 30/35 (85%)

Query: 102 MLRNSSGFYSYAIFEHLKEWPAFNIPQIRIVYKLR 136
           MLR SSGFY+YAI++HLKEWPAF++   R+ +KLR
Sbjct: 1   MLRGSSGFYTYAIYDHLKEWPAFDLDNTRVAFKLR 35


>Medtr3g111380.3 | rhamnogalacturonate lyase B-like protein | HC |
           chr3:52050786-52046530 | 20130731
          Length = 523

 Score = 57.4 bits (137), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 23/35 (65%), Positives = 30/35 (85%)

Query: 102 MLRNSSGFYSYAIFEHLKEWPAFNIPQIRIVYKLR 136
           MLR SSGFY+YAI++HLKEWPAF++   R+ +KLR
Sbjct: 1   MLRGSSGFYTYAIYDHLKEWPAFDLDNTRVAFKLR 35