Miyakogusa Predicted Gene
- Lj1g3v0177840.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v0177840.1 tr|Q08BZ9|Q08BZ9_DANRE Zgc:153893 OS=Danio rerio
GN=zgc:153893 PE=2 SV=1,40.15,3e-19,TRAF-TYPE ZINC FINGER
PROTEIN-RELATED,NULL; zf-TRAF,NULL; TRAF domain-like,TRAF-like;
seg,NULL,CUFF.25331.1
(203 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr5g066840.1 | TRAF-type zinc finger protein | HC | chr5:2823... 321 2e-88
Medtr3g111440.1 | TRAF-type zinc finger protein | HC | chr3:5207... 320 8e-88
Medtr3g111440.2 | TRAF-type zinc finger protein | HC | chr3:5207... 320 8e-88
Medtr3g111440.3 | TRAF-type zinc finger protein | HC | chr3:5207... 259 8e-70
Medtr5g066840.3 | TRAF-type zinc finger protein | HC | chr5:2823... 224 4e-59
Medtr5g066840.2 | TRAF-type zinc finger protein | HC | chr5:2823... 224 4e-59
Medtr3g099560.1 | TRAF type zinc finger protein, putative | HC |... 67 1e-11
Medtr5g086350.1 | ubiquitin fusion degradation protein (UFD1), p... 64 9e-11
>Medtr5g066840.1 | TRAF-type zinc finger protein | HC |
chr5:28234444-28229391 | 20130731
Length = 201
Score = 321 bits (823), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 150/204 (73%), Positives = 180/204 (88%), Gaps = 4/204 (1%)
Query: 1 MEAGSDQATSVCTHCDRAIPAANIDLHSVHCARNLEKCKVCGDMVPRKHAEDHYLSTHAP 60
M++ DQATS C+HCDRAIP AN+DLH HC+R L+KCKVCGDMVPR +AEDHYL+THAP
Sbjct: 1 MDSLLDQATSTCSHCDRAIPVANVDLHYAHCSRKLQKCKVCGDMVPRNNAEDHYLTTHAP 60
Query: 61 VSCSLCSETMQRDILDIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCYLCN 120
+SCSLCSET+ RDI+DIH GENCP+RIVTC+FCEFPLPA+DLAEHQEVCGNRTELC+LCN
Sbjct: 61 ISCSLCSETVDRDIIDIHTGENCPKRIVTCDFCEFPLPAIDLAEHQEVCGNRTELCHLCN 120
Query: 121 KYVRLRERFSHEARCNGVQDNTVGSSRNVREAERDEGXXXXXXXXQQNDFSTRRLLITIA 180
KYVRLRER++HEA CNG+QD+TVGSSRNVRE ER+EG +N++ST+RLL +IA
Sbjct: 121 KYVRLRERYNHEAGCNGIQDSTVGSSRNVRETERNEG---VPRRQPRNEYSTKRLLFSIA 177
Query: 181 IT-GIAVILGSIFLQKKAEPSDVH 203
+T GIAVILGS+FLQKK +PS++H
Sbjct: 178 VTGGIAVILGSMFLQKKTDPSEMH 201
>Medtr3g111440.1 | TRAF-type zinc finger protein | HC |
chr3:52079851-52076347 | 20130731
Length = 192
Score = 320 bits (819), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 153/203 (75%), Positives = 172/203 (84%), Gaps = 11/203 (5%)
Query: 1 MEAGSDQATSVCTHCDRAIPAANIDLHSVHCARNLEKCKVCGDMVPRKHAEDHYLSTHAP 60
M DQATS+C HCDRAIPAANIDLHSVHCARNLEKCK+CGDMVP+ HA+DHYL+THAP
Sbjct: 1 MTTMPDQATSICPHCDRAIPAANIDLHSVHCARNLEKCKLCGDMVPKIHAQDHYLNTHAP 60
Query: 61 VSCSLCSETMQRDILDIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCYLCN 120
V+CSLCSETM+R+IL IH+GE+CPQRIVTCEFCEFPLPA+DL EHQEVCGNRTE+C LCN
Sbjct: 61 VACSLCSETMERNILYIHEGESCPQRIVTCEFCEFPLPAIDLPEHQEVCGNRTEMCDLCN 120
Query: 121 KYVRLRERFSHEARCNGVQDNTVGSSRNVREAERDEGXXXXXXXXQQNDFSTRRLLITIA 180
KYVRLRER++HE CNG+QDN GSSRN R AERD N+ S RRL TIA
Sbjct: 121 KYVRLRERYNHEFNCNGIQDNAAGSSRNERPAERD-----------ANESSKRRLFFTIA 169
Query: 181 ITGIAVILGSIFLQKKAEPSDVH 203
ITGIAVILGSIF+Q+KAEPS+VH
Sbjct: 170 ITGIAVILGSIFIQRKAEPSNVH 192
>Medtr3g111440.2 | TRAF-type zinc finger protein | HC |
chr3:52079851-52076347 | 20130731
Length = 192
Score = 320 bits (819), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 153/203 (75%), Positives = 172/203 (84%), Gaps = 11/203 (5%)
Query: 1 MEAGSDQATSVCTHCDRAIPAANIDLHSVHCARNLEKCKVCGDMVPRKHAEDHYLSTHAP 60
M DQATS+C HCDRAIPAANIDLHSVHCARNLEKCK+CGDMVP+ HA+DHYL+THAP
Sbjct: 1 MTTMPDQATSICPHCDRAIPAANIDLHSVHCARNLEKCKLCGDMVPKIHAQDHYLNTHAP 60
Query: 61 VSCSLCSETMQRDILDIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCYLCN 120
V+CSLCSETM+R+IL IH+GE+CPQRIVTCEFCEFPLPA+DL EHQEVCGNRTE+C LCN
Sbjct: 61 VACSLCSETMERNILYIHEGESCPQRIVTCEFCEFPLPAIDLPEHQEVCGNRTEMCDLCN 120
Query: 121 KYVRLRERFSHEARCNGVQDNTVGSSRNVREAERDEGXXXXXXXXQQNDFSTRRLLITIA 180
KYVRLRER++HE CNG+QDN GSSRN R AERD N+ S RRL TIA
Sbjct: 121 KYVRLRERYNHEFNCNGIQDNAAGSSRNERPAERD-----------ANESSKRRLFFTIA 169
Query: 181 ITGIAVILGSIFLQKKAEPSDVH 203
ITGIAVILGSIF+Q+KAEPS+VH
Sbjct: 170 ITGIAVILGSIFIQRKAEPSNVH 192
>Medtr3g111440.3 | TRAF-type zinc finger protein | HC |
chr3:52079851-52077503 | 20130731
Length = 147
Score = 259 bits (663), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 119/147 (80%), Positives = 134/147 (91%)
Query: 1 MEAGSDQATSVCTHCDRAIPAANIDLHSVHCARNLEKCKVCGDMVPRKHAEDHYLSTHAP 60
M DQATS+C HCDRAIPAANIDLHSVHCARNLEKCK+CGDMVP+ HA+DHYL+THAP
Sbjct: 1 MTTMPDQATSICPHCDRAIPAANIDLHSVHCARNLEKCKLCGDMVPKIHAQDHYLNTHAP 60
Query: 61 VSCSLCSETMQRDILDIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCYLCN 120
V+CSLCSETM+R+IL IH+GE+CPQRIVTCEFCEFPLPA+DL EHQEVCGNRTE+C LCN
Sbjct: 61 VACSLCSETMERNILYIHEGESCPQRIVTCEFCEFPLPAIDLPEHQEVCGNRTEMCDLCN 120
Query: 121 KYVRLRERFSHEARCNGVQDNTVGSSR 147
KYVRLRER++HE CNG+QDN GSSR
Sbjct: 121 KYVRLRERYNHEFNCNGIQDNAAGSSR 147
>Medtr5g066840.3 | TRAF-type zinc finger protein | HC |
chr5:28234444-28229403 | 20130731
Length = 146
Score = 224 bits (571), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 106/144 (73%), Positives = 128/144 (88%), Gaps = 4/144 (2%)
Query: 61 VSCSLCSETMQRDILDIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCYLCN 120
+SCSLCSET+ RDI+DIH GENCP+RIVTC+FCEFPLPA+DLAEHQEVCGNRTELC+LCN
Sbjct: 6 ISCSLCSETVDRDIIDIHTGENCPKRIVTCDFCEFPLPAIDLAEHQEVCGNRTELCHLCN 65
Query: 121 KYVRLRERFSHEARCNGVQDNTVGSSRNVREAERDEGXXXXXXXXQQNDFSTRRLLITIA 180
KYVRLRER++HEA CNG+QD+TVGSSRNVRE ER+EG +N++ST+RLL +IA
Sbjct: 66 KYVRLRERYNHEAGCNGIQDSTVGSSRNVRETERNEG---VPRRQPRNEYSTKRLLFSIA 122
Query: 181 IT-GIAVILGSIFLQKKAEPSDVH 203
+T GIAVILGS+FLQKK +PS++H
Sbjct: 123 VTGGIAVILGSMFLQKKTDPSEMH 146
>Medtr5g066840.2 | TRAF-type zinc finger protein | HC |
chr5:28234444-28229403 | 20130731
Length = 146
Score = 224 bits (571), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 106/144 (73%), Positives = 128/144 (88%), Gaps = 4/144 (2%)
Query: 61 VSCSLCSETMQRDILDIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCYLCN 120
+SCSLCSET+ RDI+DIH GENCP+RIVTC+FCEFPLPA+DLAEHQEVCGNRTELC+LCN
Sbjct: 6 ISCSLCSETVDRDIIDIHTGENCPKRIVTCDFCEFPLPAIDLAEHQEVCGNRTELCHLCN 65
Query: 121 KYVRLRERFSHEARCNGVQDNTVGSSRNVREAERDEGXXXXXXXXQQNDFSTRRLLITIA 180
KYVRLRER++HEA CNG+QD+TVGSSRNVRE ER+EG +N++ST+RLL +IA
Sbjct: 66 KYVRLRERYNHEAGCNGIQDSTVGSSRNVRETERNEG---VPRRQPRNEYSTKRLLFSIA 122
Query: 181 IT-GIAVILGSIFLQKKAEPSDVH 203
+T GIAVILGS+FLQKK +PS++H
Sbjct: 123 VTGGIAVILGSMFLQKKTDPSEMH 146
>Medtr3g099560.1 | TRAF type zinc finger protein, putative | HC |
chr3:45640089-45639728 | 20130731
Length = 64
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/39 (76%), Positives = 34/39 (87%)
Query: 68 ETMQRDILDIHKGENCPQRIVTCEFCEFPLPAVDLAEHQ 106
ETM +IL IH+ E+CPQRIVTCEFCEFPLPA+DL EHQ
Sbjct: 24 ETMDCNILYIHECESCPQRIVTCEFCEFPLPAIDLPEHQ 62
>Medtr5g086350.1 | ubiquitin fusion degradation protein (UFD1),
putative | HC | chr5:37321996-37327207 | 20130731
Length = 571
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 65/155 (41%), Gaps = 32/155 (20%)
Query: 9 TSVCTHCDRAIPAANIDLHSVHCAR--------------------NLEKCKVCGDMVPRK 48
T C +C IP+ I LH +C+R N C CG +
Sbjct: 411 TEQCRNCKHYIPSRTIALHEAYCSRHNVTCQHEGCGVVLRIEESKNHIHCGRCGQAFQQA 470
Query: 49 HAEDHYLSTHAPVSCSLCSETMQRDILDIHKGENCPQRIVTCEFCEFPLPAVD------- 101
E H H P+ C C ++++ + H+ CP R+++C FC +PA
Sbjct: 471 ELEKHMKVFHEPLQCP-CGIVLEKEKMVEHQASVCPLRLISCRFCGDMVPAGSSAMDVRD 529
Query: 102 ----LAEHQEVCGNRTELCYLCNKYVRLRERFSHE 132
L+EH+ VCG+RT C C + V L+E H+
Sbjct: 530 RLRGLSEHESVCGSRTAPCDSCGRSVMLKEMDIHQ 564