Miyakogusa Predicted Gene

Lj1g3v0173650.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0173650.1 tr|G7JPZ6|G7JPZ6_MEDTR F-box protein OS=Medicago
truncatula GN=MTR_4g123430 PE=4 SV=1,41.01,4e-19,seg,NULL; FBOX,F-box
domain, cyclin-like,56836_g.1
         (179 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g033770.1 | F-box plant-like protein | LC | chr5:14572620-...   121   3e-28
Medtr4g119850.1 | F-box plant-like protein | HC | chr4:49665875-...   115   3e-26
Medtr3g075360.1 | F-box plant-like protein | LC | chr3:34304510-...   100   1e-21
Medtr4g123430.1 | F-box plant protein, putative | LC | chr4:5093...    93   1e-19
Medtr3g069260.1 | hypothetical protein | LC | chr3:31001658-3100...    75   3e-14
Medtr4g112590.1 | hypothetical protein | LC | chr4:45993703-4599...    75   4e-14

>Medtr5g033770.1 | F-box plant-like protein | LC |
           chr5:14572620-14573384 | 20130731
          Length = 254

 Score =  121 bits (304), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 61/121 (50%), Positives = 80/121 (66%), Gaps = 2/121 (1%)

Query: 60  PTSSIKTLPQDLLVEVVATVASHSFVDLHAIKICCKDFLDATEDSYVWRKVSLDTFPLI- 118
           P S +K  P DLLV++V  VAS S VDL+ IK+ CK+FL A+ED +V++  SLD F LI 
Sbjct: 21  PISIVKAFPNDLLVDIVGKVASGSMVDLYKIKLSCKEFLSASEDRFVYQHASLDKFALIP 80

Query: 119 -QWYTNDKTSSFLNRCREYGNIDSLYREGLRKIFDYQNGKIDGHEILEVAAQNGHKEAKY 177
             W+T +K +SFL RCRE GN++ LYREG+ + F        G E L+ AA  GH +AKY
Sbjct: 81  LPWFTEEKETSFLRRCRESGNLEILYREGMEQYFSTSMLNNLGFENLKKAALEGHHDAKY 140

Query: 178 V 178
           V
Sbjct: 141 V 141


>Medtr4g119850.1 | F-box plant-like protein | HC |
           chr4:49665875-49666789 | 20130731
          Length = 256

 Score =  115 bits (287), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 58/121 (47%), Positives = 82/121 (67%), Gaps = 3/121 (2%)

Query: 60  PTSSIKTLPQDLLVEVVATVASHSFVDLHAIKICCKDFLDATEDSYVWRKVSLDTFPLI- 118
           P S +KTLP DLLV +V  VAS S  DL  IK+ CK+FL+A+ED YV++  ++D F L+ 
Sbjct: 21  PISIVKTLPNDLLVNIVGKVASRSMADLCKIKLSCKEFLNASEDGYVYQHAAMDKFALVP 80

Query: 119 -QWYTNDKTSSFLNRCREYGNIDSLYREGLRKIFDYQNGKIDGHEILEVAAQNGHKEAKY 177
             W+T++K +SFL+RC+E GN++  YREG+ + F      + G + L+ AA  GH EAKY
Sbjct: 81  LPWFTDEKETSFLSRCKESGNLEITYREGMVQYFSTLMVDL-GLKNLKKAALEGHHEAKY 139

Query: 178 V 178
           V
Sbjct: 140 V 140


>Medtr3g075360.1 | F-box plant-like protein | LC |
           chr3:34304510-34305262 | 20130731
          Length = 250

 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/119 (42%), Positives = 74/119 (62%), Gaps = 3/119 (2%)

Query: 62  SSIKTLPQDLLVEVVATVASHSFVDLHAIKICCKDFLDATEDSYVWRKVSLDTFPLI--Q 119
           S ++ LP +LL  +V  VA+ S  DL    + CKDF  A ED +V++  +LD F LI   
Sbjct: 17  SLVEALPDELLANIVGKVATFSMADLFKTTLSCKDFCKALEDPHVYQHAALDKFALIPLA 76

Query: 120 WYTNDKTSSFLNRCREYGNIDSLYREGLRKIFDYQNGKIDGHEILEVAAQNGHKEAKYV 178
           W+T++K + FL+RCRE GN++ +YREG+ + F      + G + L+ AA  GH EAKYV
Sbjct: 77  WFTSEKETMFLSRCREMGNLEIIYREGMVQYFSTLMVNL-GFDNLKNAALGGHHEAKYV 134


>Medtr4g123430.1 | F-box plant protein, putative | LC |
           chr4:50936508-50935897 | 20130731
          Length = 172

 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/119 (43%), Positives = 70/119 (58%), Gaps = 18/119 (15%)

Query: 60  PTSSIKTLPQDLLVEVVATVASHSFVDLHAIKICCKDFLDATEDSYVWRKVSLDTFPLIQ 119
           P S +KTLP DLLV  VA VAS S +DL  IK+ CK+FL+A+ED YV++  ++D      
Sbjct: 21  PISLVKTLPNDLLVNNVAKVASRSMIDLCKIKLSCKEFLNASEDDYVYQHAAMD------ 74

Query: 120 WYTNDKTSSFLNRCREYGNIDSLYREGLRKIFDYQNGKIDGHEILEVAAQNGHKEAKYV 178
                      NRCRE GN++ +YREG+ + F      + G + L+  A  GH EAKYV
Sbjct: 75  -----------NRCRESGNLEIIYREGMVQYFSTLMVDL-GLKNLKKTALEGHHEAKYV 121


>Medtr3g069260.1 | hypothetical protein | LC |
           chr3:31001658-31001410 | 20130731
          Length = 82

 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 38/79 (48%), Positives = 56/79 (70%), Gaps = 3/79 (3%)

Query: 71  LLVEVVATVASHSFVDLHAIKICCKDFLDATEDSYVWRKVSLDTFPLI--QWYTNDKTSS 128
           LLV+++  V+++S VDL  IK+ CKDFL+   D YV++  SL  FPLI   W+T++K ++
Sbjct: 3   LLVDILGKVSTNSMVDLCKIKLSCKDFLNILADLYVYQHASLYKFPLIPHSWFTDEKETT 62

Query: 129 FLNRCREYGNIDSLYREGL 147
           FL R RE GN++ LY EG+
Sbjct: 63  FLIR-RENGNLEILYHEGM 80


>Medtr4g112590.1 | hypothetical protein | LC |
           chr4:45993703-45992938 | 20130731
          Length = 206

 Score = 74.7 bits (182), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 59/122 (48%), Gaps = 33/122 (27%)

Query: 57  GPYPTSSIKTLPQDLLVEVVATVASHSFVDLHAIKICCKDFLDATEDSYVWRKVSLDTFP 116
            P    ++ ++P+DLL++V AT+A+ S  D H +K                         
Sbjct: 26  APSSLEAVPSIPKDLLIDVFATIAAKSLSDFHKMK------------------------- 60

Query: 117 LIQWYTNDKTSSFLNRCREYGNIDSLYREGLRKIFDYQNGKIDGHEILEVAAQNGHKEAK 176
                     SSFL  C E  N + ++REGL + F Y NG IDG E L++AA+ GHKEA 
Sbjct: 61  --------NVSSFLRSCLESENTEIIFREGLLEYFGYPNGNIDGLERLKIAAEKGHKEAI 112

Query: 177 YV 178
           Y+
Sbjct: 113 YI 114