Miyakogusa Predicted Gene

Lj1g3v0129720.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0129720.1 tr|Q0ZCE0|Q0ZCE0_POPTR Poly(ADP-ribose)
glycohydrolase OS=Populus trichocarpa PE=2
SV=1,36.09,1e-17,POLY(ADP-RIBOSE) GLYCOHYDROLASE,Poly(ADP-ribose)
glycohydrolase; PARG_cat,Poly(ADP-ribose)
glycohydr,NODE_83911_length_764_cov_33.859947.path1.1
         (184 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g029520.1 | poly(ADP-ribose) glycohydrolase | HC | chr3:92...   250   5e-67

>Medtr3g029520.1 | poly(ADP-ribose) glycohydrolase | HC |
           chr3:9287704-9281872 | 20130731
          Length = 529

 Score =  250 bits (639), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 130/179 (72%), Positives = 141/179 (78%), Gaps = 12/179 (6%)

Query: 1   MRQYRPEFLLREINKAFCGFLYGSKHQLYQKILQEKGCPSTLFDAATSTPMETSEGKCSN 60
           MRQYR +FLLREINKAFCGFL  S++Q  QKI QE       FDA     METSEGK S 
Sbjct: 361 MRQYREKFLLREINKAFCGFLQQSQYQRDQKIPQEN------FDA-----METSEGKYSY 409

Query: 61  HEIRDSQNDYHRMEQCNNIGVATGNWGCGAFGGDPEVKTIIQWLAASQALRPFIAYYRFR 120
            EIR+SQNDY  ME  N+IGVATGNWGCGAFGGDPEVKTIIQWLAASQA RPFIAYY F 
Sbjct: 410 QEIRNSQNDYDMMENSNDIGVATGNWGCGAFGGDPEVKTIIQWLAASQAGRPFIAYYTFG 469

Query: 121 LEALHNIDKVAHWILSHRWTVGDLWNMLTEYSMNRSKGGTNVGFLQWVLPSMYD-DAGM 178
             AL N+DKV+ WILS  WTVGDLWNML EYS +RSKG TNVGFLQW+LPS+YD D+GM
Sbjct: 470 SGALQNLDKVSCWILSQGWTVGDLWNMLVEYSTSRSKGETNVGFLQWLLPSIYDHDSGM 528