Miyakogusa Predicted Gene

Lj1g3v0129560.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0129560.1 tr|G7KA09|G7KA09_MEDTR Protein SMG9 OS=Medicago
truncatula GN=MTR_5g061700 PE=4
SV=1,59.63,4e-17,seg,NULL,NODE_80234_length_334_cov_96.335327.path1.1
         (105 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g007700.1 | SMG9-like protein | HC | chr5:1464083-1468299 ...   130   3e-31
Medtr5g007700.2 | SMG9-like protein | HC | chr5:1464083-1468299 ...   130   3e-31
Medtr5g061700.1 | SMG9 | HC | chr5:25630667-25625430 | 20130731        89   9e-19

>Medtr5g007700.1 | SMG9-like protein | HC | chr5:1464083-1468299 |
           20130731
          Length = 396

 Score =  130 bits (327), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 66/105 (62%), Positives = 74/105 (70%)

Query: 1   MWHLMLTVDLLKHGIPDPXXXXXXXXXXXXXGHEKDNKLSGREYMATPVFVHTKLHDQEF 60
           +WHLM TVDLLKHGI DP             GH+ DNK+   EYMATPVFVHTKL DQEF
Sbjct: 207 LWHLMSTVDLLKHGISDPSLLASSLSQNSSSGHDSDNKVPEFEYMATPVFVHTKLQDQEF 266

Query: 61  TPKNFVQLRKTLIQYFKPSSFVREHAEHKPEEHISSSMVHDSPMD 105
           TPKN +QLRK L+QYFKPSSFV E+   KP  H+  SMVH SP+D
Sbjct: 267 TPKNCLQLRKALMQYFKPSSFVGENTGKKPSNHVPPSMVHGSPLD 311


>Medtr5g007700.2 | SMG9-like protein | HC | chr5:1464083-1468299 |
           20130731
          Length = 360

 Score =  130 bits (326), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 66/105 (62%), Positives = 74/105 (70%)

Query: 1   MWHLMLTVDLLKHGIPDPXXXXXXXXXXXXXGHEKDNKLSGREYMATPVFVHTKLHDQEF 60
           +WHLM TVDLLKHGI DP             GH+ DNK+   EYMATPVFVHTKL DQEF
Sbjct: 207 LWHLMSTVDLLKHGISDPSLLASSLSQNSSSGHDSDNKVPEFEYMATPVFVHTKLQDQEF 266

Query: 61  TPKNFVQLRKTLIQYFKPSSFVREHAEHKPEEHISSSMVHDSPMD 105
           TPKN +QLRK L+QYFKPSSFV E+   KP  H+  SMVH SP+D
Sbjct: 267 TPKNCLQLRKALMQYFKPSSFVGENTGKKPSNHVPPSMVHGSPLD 311


>Medtr5g061700.1 | SMG9 | HC | chr5:25630667-25625430 | 20130731
          Length = 398

 Score = 89.0 bits (219), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 54/113 (47%), Positives = 66/113 (58%), Gaps = 9/113 (7%)

Query: 1   MWHLML--------TVDLLKHGIPDPXXXXXXXXXXXXXGHEKDNKLSGREYMATPVFVH 52
           MWHLM          VDLLKH I DP             G EKDNK+  REY+ATPVF+H
Sbjct: 202 MWHLMFMIFADASFCVDLLKHDISDPSLLASSLSQSSNSGIEKDNKVPEREYLATPVFIH 261

Query: 53  TKLHDQEFTPKNFVQLRKTLIQYFKPSSFVREHAEHKPEEHISSSMVHDSPMD 105
           TKL  +E +P+    L K L+  FK SSFVRE+  + P+EH SSS  H++ MD
Sbjct: 262 TKLQGRELSPRIVWLLSKALMHDFKSSSFVRENTGNNPDEH-SSSKFHNTDMD 313