Miyakogusa Predicted Gene

Lj1g3v0129500.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0129500.1 Non Characterized Hit- tr|K4BJB1|K4BJB1_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,40.94,2e-16,seg,NULL,
NODE_24649_length_672_cov_502.055054.path2.1
         (177 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g007710.1 | ubiquitin-protein ligase synoviolin | HC | chr...   163   8e-41
Medtr4g077800.1 | E3 ubiquitin-protein ligase synoviolin-like pr...    90   1e-18
Medtr4g077800.2 | E3 ubiquitin-protein ligase synoviolin-like pr...    89   2e-18
Medtr4g077703.1 | hypothetical protein | HC | chr4:29787267-2978...    53   1e-07
Medtr5g007710.2 | ubiquitin-protein ligase synoviolin | HC | chr...    52   3e-07

>Medtr5g007710.1 | ubiquitin-protein ligase synoviolin | HC |
           chr5:1471216-1474618 | 20130731
          Length = 539

 Score =  163 bits (412), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 100/182 (54%), Positives = 118/182 (64%), Gaps = 17/182 (9%)

Query: 1   MATDSLSRHEARLQXXXXXXSIYEKSYVYPSASSSVCSPGHAFYTP-----TSTGFNGEQ 55
           +ATDSLSRH+ARLQ      SIYEKSYVYP A+S V SPG+  Y P     TS   NGEQ
Sbjct: 370 VATDSLSRHQARLQAAAAAASIYEKSYVYPPATSFVRSPGYTNYPPVAAESTSVDLNGEQ 429

Query: 56  ASSEQAQKQFLIPGQPTNVSFPPMGHYNFLPSQTFASPVNYGEAFGNDPNIPSSQLEAHR 115
           ASS+QAQ QF IPG P N  FP  GH+++LPSQ + +P+NYGE F NDPNI  SQLEAH+
Sbjct: 430 ASSQQAQNQFHIPGGPINAPFPSTGHFHYLPSQPYMAPLNYGEGFENDPNISKSQLEAHK 489

Query: 116 KFLRWQIEVLEKQLRNLPETKADDRSVDDGTXXXXXXXXXXXXXXXXXGHVHHDEEIQDG 175
           K L+ QIE+L+ QL+NL  T+A  RSVDDG                  G +    EIQDG
Sbjct: 490 KILQQQIEILQNQLQNLQSTEA-KRSVDDGA-----------PSSESKGKLSSSSEIQDG 537

Query: 176 KA 177
           KA
Sbjct: 538 KA 539


>Medtr4g077800.1 | E3 ubiquitin-protein ligase synoviolin-like
           protein | HC | chr4:29778294-29784602 | 20130731
          Length = 522

 Score = 90.1 bits (222), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/100 (51%), Positives = 63/100 (63%), Gaps = 2/100 (2%)

Query: 1   MATDSLSRHEARLQXXXXXXSIYEKSYVYPSASSSVCSPGHAFYTPTSTG--FNGEQASS 58
           +A D+LSRH+ARLQ      SIYEKSYVYPS + +   P H     +S     +GEQ SS
Sbjct: 372 VARDNLSRHQARLQAAAAAASIYEKSYVYPSPTFACYPPIHRSVVQSSNNAELDGEQVSS 431

Query: 59  EQAQKQFLIPGQPTNVSFPPMGHYNFLPSQTFASPVNYGE 98
           EQAQKQF+IPG P N S  P+  +   PSQT A+ + YGE
Sbjct: 432 EQAQKQFVIPGGPMNASSSPVQSFYVPPSQTHAAHMTYGE 471


>Medtr4g077800.2 | E3 ubiquitin-protein ligase synoviolin-like
           protein | HC | chr4:29778294-29783780 | 20130731
          Length = 495

 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/100 (51%), Positives = 63/100 (63%), Gaps = 2/100 (2%)

Query: 1   MATDSLSRHEARLQXXXXXXSIYEKSYVYPSASSSVCSPGHAFYTPTSTG--FNGEQASS 58
           +A D+LSRH+ARLQ      SIYEKSYVYPS + +   P H     +S     +GEQ SS
Sbjct: 372 VARDNLSRHQARLQAAAAAASIYEKSYVYPSPTFACYPPIHRSVVQSSNNAELDGEQVSS 431

Query: 59  EQAQKQFLIPGQPTNVSFPPMGHYNFLPSQTFASPVNYGE 98
           EQAQKQF+IPG P N S  P+  +   PSQT A+ + YGE
Sbjct: 432 EQAQKQFVIPGGPMNASSSPVQSFYVPPSQTHAAHMTYGE 471


>Medtr4g077703.1 | hypothetical protein | HC |
           chr4:29787267-29787822 | 20130731
          Length = 115

 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 38/67 (56%), Gaps = 9/67 (13%)

Query: 51  FNGEQASSEQAQKQFLIPGQPTNVSFPPMGHYNFLPSQTFASPVNYGEAFGNDPNIPSSQ 110
            +GEQ SSEQAQKQF+IPG P N S  P+  +   PSQT A+ + YGE          SQ
Sbjct: 43  LDGEQVSSEQAQKQFVIPGGPMNASSSPVQSFYVPPSQTHAAHMTYGEG---------SQ 93

Query: 111 LEAHRKF 117
           L A  K 
Sbjct: 94  LGAQTKL 100


>Medtr5g007710.2 | ubiquitin-protein ligase synoviolin | HC |
           chr5:1471216-1473344 | 20130731
          Length = 422

 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 30/42 (71%)

Query: 1   MATDSLSRHEARLQXXXXXXSIYEKSYVYPSASSSVCSPGHA 42
           +ATDSLSRH+ARLQ      SIYEKSYVYP A+S V    HA
Sbjct: 370 VATDSLSRHQARLQAAAAAASIYEKSYVYPPATSFVRYGVHA 411