Miyakogusa Predicted Gene

Lj1g3v0128850.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0128850.1 Non Characterized Hit- tr|C3Y9F2|C3Y9F2_BRAFL
Putative uncharacterized protein OS=Branchiostoma
flor,26.79,0.000000000000008,NERD,NERD,CUFF.25261.1
         (329 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g007360.1 | RAP annotation release 2, NERD domain protein ...   506   e-143
Medtr3g091660.1 | nuclease-related domain protein | LC | chr3:41...   121   8e-28
Medtr3g091670.1 | RAP annotation release 2, NERD domain protein,...    80   3e-15

>Medtr5g007360.1 | RAP annotation release 2, NERD domain protein |
           HC | chr5:1310216-1315059 | 20130731
          Length = 322

 Score =  506 bits (1303), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 248/323 (76%), Positives = 282/323 (87%), Gaps = 2/323 (0%)

Query: 8   MWAAIICGLVIYKLFRRFMYDDDILDIEGSDSSALFSVADRLKKLYGGKVHVGLRIPDAD 67
           MW AIICGL+IYKLF+ F YDDD+LDIE SDS+ LFSVA+RL+KL+GGKV VGLRIPDAD
Sbjct: 1   MWPAIICGLIIYKLFKCFFYDDDVLDIEASDSTVLFSVANRLQKLFGGKVFVGLRIPDAD 60

Query: 68  SASRQTIDIVLVTKQELAVISVKNFSGILAVHRDGSWVSEKPGKHKQETHPDPVEEARKQ 127
           SAS QTID+VL+TK+EL VISVKNFSGIL V  DGSW  EKPGKHK + +P+P+EE RKQ
Sbjct: 61  SASPQTIDLVLLTKRELLVISVKNFSGILTVQGDGSWACEKPGKHKVDRYPEPLEEVRKQ 120

Query: 128 VSILESYLKQRGVDLPKGYISYKVILPNPKLCTLPASDFPPEVITHEQWVQLKPGHKSMF 187
            SILESYL+QRGV LPKG++  KVILPNPKLCT+PASDFP EVITHEQ VQLKPG KS+ 
Sbjct: 121 ASILESYLEQRGVVLPKGFLICKVILPNPKLCTIPASDFPSEVITHEQLVQLKPGTKSVL 180

Query: 188 SSWVKSAFGAGKKDMQEST-QNLDFVLSTAPIWDRLELKGSKYVLGEFLEFKGKQEDIEA 246
           SSWVK+ F +GK DMQES+ QNL+F LSTAPIWDRLELKGSKYVLGEFLEFKGK+ D+EA
Sbjct: 181 SSWVKNTFLSGKNDMQESSNQNLEFSLSTAPIWDRLELKGSKYVLGEFLEFKGKEGDVEA 240

Query: 247 LSYIRRSKVGRVTIQKTSMFGLAPSRLQVLYSLRDYRTEGSSTPPELNEVNVRSSTEIVF 306
           L +IRRSKVG++ IQKTSMFGLAPS LQVLY+ RDYRTEG+S  PE NEV V+SSTEI+F
Sbjct: 241 LRHIRRSKVGQMIIQKTSMFGLAPSTLQVLYTFRDYRTEGASA-PEWNEVTVKSSTEIIF 299

Query: 307 QPENASKVRKFKLSSVTSMLLSA 329
           Q ENASK++KFKLSSV SM LSA
Sbjct: 300 QVENASKIKKFKLSSVCSMHLSA 322


>Medtr3g091660.1 | nuclease-related domain protein | LC |
           chr3:41728112-41729636 | 20130731
          Length = 152

 Score =  121 bits (304), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 63/112 (56%), Positives = 80/112 (71%), Gaps = 3/112 (2%)

Query: 69  ASRQTIDIVLVTKQELAVISVKNFSGILAVHRDGSWVSEKPGKH-KQETHPDPVEEARKQ 127
           +S QTID++L+TK+EL VISVKNFSGIL V  DG W  EK GKH K E HPDPVEE RKQ
Sbjct: 42  SSPQTIDLLLLTKRELRVISVKNFSGILTVQGDGRWACEKSGKHNKVERHPDPVEEVRKQ 101

Query: 128 VSILESYLKQRGVDLPKGYISYKVILPNPKLCTLPASDFPPEVITHEQWVQL 179
            SIL+SYL+QRG  L + +++ KVILPNP L  +  ++ P  + T  ++ Q 
Sbjct: 102 ASILQSYLEQRGAVLTREFLTCKVILPNPTLWYV--TETPVNICTFCKYYQF 151


>Medtr3g091670.1 | RAP annotation release 2, NERD domain protein,
           putative | HC | chr3:41729990-41730187 | 20130731
          Length = 65

 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/61 (72%), Positives = 49/61 (80%), Gaps = 1/61 (1%)

Query: 269 APSRLQVLYSLRDYRTEGSSTPPELNEVNVRSSTEIVFQPENASKVRKFKLSSVTSMLLS 328
           APS LQVLY L DYRT+G +TP E  EV VRSST+I+FQ +NASK RKFKLSSV SM LS
Sbjct: 6   APSTLQVLYILLDYRTKGVTTP-EWKEVTVRSSTKILFQVKNASKSRKFKLSSVCSMHLS 64

Query: 329 A 329
           A
Sbjct: 65  A 65