Miyakogusa Predicted Gene

Lj1g3v0117760.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0117760.1 Non Characterized Hit- tr|A9NMG3|A9NMG3_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,40,8e-19,seg,NULL; coiled-coil,NULL,CUFF.25836.1
         (161 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g007210.1 | transmembrane protein, putative | HC | chr5:12...   157   3e-39
Medtr3g115930.1 | transmembrane protein, putative | HC | chr3:54...    55   3e-08
Medtr5g024680.1 | transmembrane protein, putative | HC | chr5:99...    54   5e-08

>Medtr5g007210.1 | transmembrane protein, putative | HC |
           chr5:1243259-1247003 | 20130731
          Length = 163

 Score =  157 bits (398), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 93/166 (56%), Positives = 107/166 (64%), Gaps = 9/166 (5%)

Query: 1   MATSFAPFSIS--GGSHLKPPELWLTKHNSSGVGPKLT-FQXXXXXXXXXXXXXXXXAEY 57
           MATSFAP SIS  GGSH+K PEL+ TK NS+  GPKL   Q                AE+
Sbjct: 1   MATSFAPLSISSVGGSHVKSPELFSTKRNSALFGPKLAAVQRKSNLVTRRNLISPVRAEH 60

Query: 58  GDSKXXXXXXXXXXXXXXXXXXXTLAYVFAPQIRRSLLNEDEYGFRKAKRP-IYYDEGLE 116
            +++                   TLAYVFAPQIR+SLLNEDEYGFR+A+RP  YYDEGLE
Sbjct: 61  RNNRGGDLVAGFLLGGAIFG---TLAYVFAPQIRKSLLNEDEYGFRRARRPPYYYDEGLE 117

Query: 117 RTRETLNEKISQLNSAIDNVSSRLRGNNNAPAAQ--IENDPEVEAT 160
           RTRETLN+KI QLNSAIDN+SSRLRGN   PAA   +E+DPE E  
Sbjct: 118 RTRETLNDKIRQLNSAIDNISSRLRGNKKVPAAAPPLESDPEFEGV 163


>Medtr3g115930.1 | transmembrane protein, putative | HC |
           chr3:54195222-54187330 | 20130731
          Length = 169

 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/80 (45%), Positives = 48/80 (60%), Gaps = 3/80 (3%)

Query: 82  LAYVFAPQIRRSLL-NEDEYGFRKAKRPIYYDE-GLERTRETLNEKISQLNSAIDNVSSR 139
           L  V+APQI  +L   E +   RK  + IY +E  LE+TR+ L  KI QLNSAID +SS+
Sbjct: 89  LGCVYAPQISNALTGTERKELMRKLPKFIYDEEKALEKTRKVLANKIEQLNSAIDEISSQ 148

Query: 140 LRGNNNAPAAQIENDPEVEA 159
           LR  +      + +D EVEA
Sbjct: 149 LRSGDTPNGVAVNSD-EVEA 167


>Medtr5g024680.1 | transmembrane protein, putative | HC |
           chr5:9921144-9916334 | 20130731
          Length = 166

 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 41/66 (62%), Gaps = 2/66 (3%)

Query: 82  LAYVFAPQIRRSLLNEDEYGFRKAKRPIYYDE--GLERTRETLNEKISQLNSAIDNVSSR 139
           L  V+AP+I ++L   +     K      YDE   LE+TR+ L+EKI+QLNSAID VS+ 
Sbjct: 86  LGCVYAPKISKALAGAEGKELMKKLPKFIYDEEKALEKTRKMLSEKIAQLNSAIDGVSAN 145

Query: 140 LRGNNN 145
           LR + +
Sbjct: 146 LRSDED 151