Miyakogusa Predicted Gene

Lj1g3v0116700.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0116700.1 Non Characterized Hit- tr|A9NMG3|A9NMG3_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,42.67,1e-18,coiled-coil,NULL; seg,NULL,CUFF.25829.1
         (146 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g007210.1 | transmembrane protein, putative | HC | chr5:12...   150   5e-37
Medtr5g024680.1 | transmembrane protein, putative | HC | chr5:99...    58   2e-09
Medtr3g115930.1 | transmembrane protein, putative | HC | chr3:54...    55   2e-08

>Medtr5g007210.1 | transmembrane protein, putative | HC |
           chr5:1243259-1247003 | 20130731
          Length = 163

 Score =  150 bits (378), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 87/147 (59%), Positives = 97/147 (65%), Gaps = 7/147 (4%)

Query: 1   MATSFAPFSIS--GGSHLKPPELWLTKHNSSGVGPKLT-FQXXXXXXXXXXXXXXXXAEY 57
           MATSFAP SIS  GGSH+K PEL+ TK NS+  GPKL   Q                AE+
Sbjct: 1   MATSFAPLSISSVGGSHVKSPELFSTKRNSALFGPKLAAVQRKSNLVTRRNLISPVRAEH 60

Query: 58  XXXXXXXXXXXXXXXXXXXXVFGTLAYVFAPQIRRSLLNEDEYGFRKAKRP-IYYDEGLE 116
                               +FGTLAYVFAPQIR+SLLNEDEYGFR+A+RP  YYDEGLE
Sbjct: 61  RNNRGGDLVAGFLLGGA---IFGTLAYVFAPQIRKSLLNEDEYGFRRARRPPYYYDEGLE 117

Query: 117 RTRETLNEKISQLNSAIDNVSSRLRGN 143
           RTRETLN+KI QLNSAIDN+SSRLRGN
Sbjct: 118 RTRETLNDKIRQLNSAIDNISSRLRGN 144


>Medtr5g024680.1 | transmembrane protein, putative | HC |
           chr5:9921144-9916334 | 20130731
          Length = 166

 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 2/70 (2%)

Query: 78  VFGTLAYVFAPQIRRSLLNEDEYGFRKAKRPIYYDE--GLERTRETLNEKISQLNSAIDN 135
           + G L  V+AP+I ++L   +     K      YDE   LE+TR+ L+EKI+QLNSAID 
Sbjct: 82  IVGALGCVYAPKISKALAGAEGKELMKKLPKFIYDEEKALEKTRKMLSEKIAQLNSAIDG 141

Query: 136 VSSRLRGNNN 145
           VS+ LR + +
Sbjct: 142 VSANLRSDED 151


>Medtr3g115930.1 | transmembrane protein, putative | HC |
           chr3:54195222-54187330 | 20130731
          Length = 169

 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 43/69 (62%), Gaps = 2/69 (2%)

Query: 78  VFGTLAYVFAPQIRRSLL-NEDEYGFRKAKRPIYYDE-GLERTRETLNEKISQLNSAIDN 135
           V G L  V+APQI  +L   E +   RK  + IY +E  LE+TR+ L  KI QLNSAID 
Sbjct: 85  VVGALGCVYAPQISNALTGTERKELMRKLPKFIYDEEKALEKTRKVLANKIEQLNSAIDE 144

Query: 136 VSSRLRGNN 144
           +SS+LR  +
Sbjct: 145 ISSQLRSGD 153