Miyakogusa Predicted Gene

Lj1g3v0116370.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0116370.1 Non Characterized Hit- tr|C6SW24|C6SW24_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.518
PE=2,95.07,0,PROTEASOME SUBUNIT BETA TYPE 2,NULL; PROTEASOME SUBUNIT
ALPHA/BETA,NULL; Proteasome,Proteasome, subu,CUFF.25244.1
         (206 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g006840.1 | 20S proteasome beta protein | HC | chr5:110136...   402   e-113
Medtr5g012470.1 | 20S proteasome beta protein | HC | chr5:373395...   401   e-112
Medtr2g050000.1 | 20S proteasome beta protein | HC | chr2:229818...   203   9e-53
Medtr3g109210.1 | proteasome subunit beta protein | HC | chr3:50...    67   1e-11
Medtr1g112250.2 | 20S proteasome subunit alpha | HC | chr1:50768...    64   1e-10
Medtr1g112250.1 | 20S proteasome subunit alpha | HC | chr1:50768...    64   1e-10
Medtr3g089040.1 | proteasome-alpha-type-5 protein | HC | chr3:33...    58   7e-09

>Medtr5g006840.1 | 20S proteasome beta protein | HC |
           chr5:1101363-1107402 | 20130731
          Length = 203

 Score =  402 bits (1034), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 193/203 (95%), Positives = 198/203 (97%)

Query: 1   MECVFGLVGNGFAIVAADTSAVHSILVHKSDEDKIMLLDSHKLVAASGEAGDRVQFTEYI 60
           MECVFGLVGNGFAIV ADTSAVHSILVHKS+EDKIM LDSHKL+AASGE GDRVQFTEYI
Sbjct: 1   MECVFGLVGNGFAIVVADTSAVHSILVHKSNEDKIMFLDSHKLIAASGEPGDRVQFTEYI 60

Query: 61  QKNVALYQFRNGIPLTTAAAANFTRGELATALRKNPYSVNILLAGYDKETGPSLYYIDYI 120
           QKNVALYQFRNGIPLTTAAAANFTRGELATALRKNPYSVNILLAGYDKETGPSLYYIDYI
Sbjct: 61  QKNVALYQFRNGIPLTTAAAANFTRGELATALRKNPYSVNILLAGYDKETGPSLYYIDYI 120

Query: 121 ATLHKLEKGAFGYGSYFSLSMMDRHYHSGMSVEEAIDLVDKCIHEIRSRLVVAPPNFVIK 180
           ATLHKLEKGAFGYGSYFSLSMMDRH+HSGM+VEEAIDLVDKCI EIRSRLVVAPPNFVIK
Sbjct: 121 ATLHKLEKGAFGYGSYFSLSMMDRHFHSGMNVEEAIDLVDKCILEIRSRLVVAPPNFVIK 180

Query: 181 IVDKDGAREYAWRQSVKDTPAPA 203
           IVDKDGAREYAWR+SVKDTPA A
Sbjct: 181 IVDKDGAREYAWRESVKDTPASA 203


>Medtr5g012470.1 | 20S proteasome beta protein | HC |
           chr5:3733958-3736784 | 20130731
          Length = 204

 Score =  401 bits (1030), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 193/203 (95%), Positives = 195/203 (96%)

Query: 1   MECVFGLVGNGFAIVAADTSAVHSILVHKSDEDKIMLLDSHKLVAASGEAGDRVQFTEYI 60
           MECVFGLVG  FAIV ADTSAVHSILVHKS+EDKIM LDSHKLVAASGE GDRVQFTEYI
Sbjct: 1   MECVFGLVGTDFAIVVADTSAVHSILVHKSNEDKIMFLDSHKLVAASGEPGDRVQFTEYI 60

Query: 61  QKNVALYQFRNGIPLTTAAAANFTRGELATALRKNPYSVNILLAGYDKETGPSLYYIDYI 120
           QKNVALYQFRNGIPLTTAAAANFTRGELATALRKNPYSVNILLAGYDKETGPSLYYIDYI
Sbjct: 61  QKNVALYQFRNGIPLTTAAAANFTRGELATALRKNPYSVNILLAGYDKETGPSLYYIDYI 120

Query: 121 ATLHKLEKGAFGYGSYFSLSMMDRHYHSGMSVEEAIDLVDKCIHEIRSRLVVAPPNFVIK 180
           ATLHKLEKGAFGYGSYFSLSMMDRHYHSGMSVEEAIDLVDKCI EIRSRLVVAPPNFVIK
Sbjct: 121 ATLHKLEKGAFGYGSYFSLSMMDRHYHSGMSVEEAIDLVDKCIAEIRSRLVVAPPNFVIK 180

Query: 181 IVDKDGAREYAWRQSVKDTPAPA 203
           IVDKDGAREYAWRQSV DTP P+
Sbjct: 181 IVDKDGAREYAWRQSVNDTPVPS 203


>Medtr2g050000.1 | 20S proteasome beta protein | HC |
           chr2:22981882-22981312 | 20130731
          Length = 108

 Score =  203 bits (517), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 99/109 (90%), Positives = 103/109 (94%), Gaps = 2/109 (1%)

Query: 95  NPYSVNILLAGYDKETGPSLYYIDYIATLHKLEKGAFGYGSYFSLSMMDRHYHSGMSVEE 154
           NPYSVNILLAGYDKETGPSLYYIDYIATLHKLEKGAFGYGSYFSL MMD+H+HSGM+VEE
Sbjct: 2   NPYSVNILLAGYDKETGPSLYYIDYIATLHKLEKGAFGYGSYFSLLMMDKHFHSGMNVEE 61

Query: 155 AIDLVDKCIHEIRSRLVVAPPNFVIKIVDKDGAREYAWRQSVKDTPAPA 203
           AIDLVDKCI EIRSRLVVAPPNFVIKIVDKDGAR  AWR+SVKDT A A
Sbjct: 62  AIDLVDKCILEIRSRLVVAPPNFVIKIVDKDGAR--AWRESVKDTHASA 108


>Medtr3g109210.1 | proteasome subunit beta protein | HC |
           chr3:50493505-50489857 | 20130731
          Length = 232

 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 72/161 (44%), Gaps = 2/161 (1%)

Query: 3   CVFGLVGNGFAIVAADTSAVHSILVHKSDEDKIMLLDSHKLVAASGEAGDRVQFTEYIQK 62
            + G+  NG  ++ AD+     + V     DKI  L  +  V  SG A D    ++Y++ 
Sbjct: 15  TIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYVCRSGSAADSQVVSDYVRY 74

Query: 63  NVALYQFRNGIPLTTAAAANFTRGELATALRKNPYSVNILLAGYDKETGPSLYYIDYIAT 122
            +  +  + G P T   AAN  R  L     KN     +++ G+DK  G  +Y +    T
Sbjct: 75  FLHQHTIQLGQPATVKVAANLVR--LLAYNNKNNLQTGLIVGGWDKYEGGQIYGVPLGGT 132

Query: 123 LHKLEKGAFGYGSYFSLSMMDRHYHSGMSVEEAIDLVDKCI 163
           + +      G GS +     D+ +  GM+ +EA DLV K +
Sbjct: 133 IVQQPFAIGGSGSSYLYGFFDQAWKDGMTKDEAEDLVKKAV 173


>Medtr1g112250.2 | 20S proteasome subunit alpha | HC |
           chr1:50768379-50773010 | 20130731
          Length = 237

 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 80/174 (45%), Gaps = 13/174 (7%)

Query: 13  AIVAADTSAVHSILVHKSDEDKIMLLDSHKLVAASGEAGDRVQFTEYIQKNVALYQFRNG 72
            +V A    + S L+  S  +KIM +D H   A SG   D     E+ +     ++F  G
Sbjct: 45  GVVLAVEKRITSPLLEPSSVEKIMEIDDHIGCAMSGLIADARTLVEHARVETQNHRFSYG 104

Query: 73  IPLTTAA--------AANFTRGELATALRKNPYSVNILLAGYDKETGPSLYYIDYIATLH 124
            P+T  +        A  F  G+  +  R  P+ V++L+AG+D E GPSLYY D   T  
Sbjct: 105 EPMTVESTTQALCDLALRFGEGDEESMSR--PFGVSLLIAGHD-ENGPSLYYTDPSGTFW 161

Query: 125 KLEKGAFGYGSYFSLSMMDRHYHSGMSVEEAIDLVDKCIHEIRSRLVVAPPNFV 178
           +    A G GS  + S +   ++  ++++EA  +    + ++    V   PN V
Sbjct: 162 QCNAKAIGSGSEGADSSLQEQFNKDLTLQEAETIALSILKQVMEEKVT--PNNV 213


>Medtr1g112250.1 | 20S proteasome subunit alpha | HC |
           chr1:50768358-50773041 | 20130731
          Length = 237

 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 80/174 (45%), Gaps = 13/174 (7%)

Query: 13  AIVAADTSAVHSILVHKSDEDKIMLLDSHKLVAASGEAGDRVQFTEYIQKNVALYQFRNG 72
            +V A    + S L+  S  +KIM +D H   A SG   D     E+ +     ++F  G
Sbjct: 45  GVVLAVEKRITSPLLEPSSVEKIMEIDDHIGCAMSGLIADARTLVEHARVETQNHRFSYG 104

Query: 73  IPLTTAA--------AANFTRGELATALRKNPYSVNILLAGYDKETGPSLYYIDYIATLH 124
            P+T  +        A  F  G+  +  R  P+ V++L+AG+D E GPSLYY D   T  
Sbjct: 105 EPMTVESTTQALCDLALRFGEGDEESMSR--PFGVSLLIAGHD-ENGPSLYYTDPSGTFW 161

Query: 125 KLEKGAFGYGSYFSLSMMDRHYHSGMSVEEAIDLVDKCIHEIRSRLVVAPPNFV 178
           +    A G GS  + S +   ++  ++++EA  +    + ++    V   PN V
Sbjct: 162 QCNAKAIGSGSEGADSSLQEQFNKDLTLQEAETIALSILKQVMEEKVT--PNNV 213


>Medtr3g089040.1 | proteasome-alpha-type-5 protein | HC |
           chr3:33949434-33945682 | 20130731
          Length = 271

 Score = 57.8 bits (138), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 2/156 (1%)

Query: 14  IVAADTSAVHSILVHKSDEDKIMLLDSHKLVAASGEAGDRVQFTEYIQKNVALYQFRNGI 73
           +VAAD+ A     +      KI+ ++ + L   +G A D   +   +     L++  N  
Sbjct: 67  MVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKR 126

Query: 74  PLTTAAAANFTRGELATALRKNPYSVNILLAGYDKETGPSLYYIDYIATLHKLEKGAFGY 133
            ++   A+      +  + R    SV  ++AG+D ETGP LYY+D      K  + + G 
Sbjct: 127 RISVTGASKLL-ANILYSYRGMGLSVGTMIAGWD-ETGPGLYYVDSEGGRLKGNRFSVGS 184

Query: 134 GSYFSLSMMDRHYHSGMSVEEAIDLVDKCIHEIRSR 169
           GS ++  ++D  Y   MSVEEA +L  + I+    R
Sbjct: 185 GSPYAYGVLDSGYKYDMSVEEASELARRAIYHATFR 220