Miyakogusa Predicted Gene

Lj1g3v0114230.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0114230.2 Non Characterized Hit- tr|I1LFV4|I1LFV4_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.48211
PE,77.75,0,seg,NULL; P-loop containing nucleoside triphosphate
hydrolases,NULL; Helicase_C,Helicase, C-terminal,CUFF.25235.2
         (451 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g006660.2 | ATP-dependent RNA helicase SUPV3L1 | HC | chr5...   691   0.0  
Medtr5g006660.1 | ATP-dependent RNA helicase SUPV3L1 | HC | chr5...   690   0.0  
Medtr6g011800.1 | ATP-dependent RNA helicase SUPV3L1 | HC | chr6...   358   5e-99
Medtr3g462290.1 | RNA helicase, ATP-dependent, SK12/DOB1 protein...    51   3e-06

>Medtr5g006660.2 | ATP-dependent RNA helicase SUPV3L1 | HC |
           chr5:1030691-1022392 | 20130731
          Length = 524

 Score =  691 bits (1784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/424 (78%), Positives = 371/424 (87%), Gaps = 15/424 (3%)

Query: 1   MSSFFLRRSTVFFSRALTGN-RERFHLYFQFK----------VHPYS----TRTASIRND 45
           M+SF LRR++   +R+LTGN +E+F  YFQ K          +HPYS    + + SIRN+
Sbjct: 1   MASFLLRRNSNLLARSLTGNYKEQFCPYFQAKFECLGAALNSLHPYSRSYGSASGSIRNE 60

Query: 46  FTDLTSPHTWYPQARSKRRRVILHVGPTNSGKTYHALKQLESSASGIYCGPLRLLAWEIA 105
            TD+T PHTWYP AR KRRRV LHVGPTNSGKTY ALKQL+SSASGIYCGPLRLLAWE+A
Sbjct: 61  ITDMTCPHTWYPLARRKRRRVFLHVGPTNSGKTYQALKQLQSSASGIYCGPLRLLAWEVA 120

Query: 106 KRLNKANVPCDLITGQEREEVDGANHRAATVEMADVSSDYQCAVIDEIQMLGCSTRGYSF 165
           KRLNKANVPCDLITGQER+EV+GA+H+A TVEMADVS+DY+CAVIDEIQMLGC+TRGYSF
Sbjct: 121 KRLNKANVPCDLITGQERDEVEGAHHKAVTVEMADVSTDYKCAVIDEIQMLGCNTRGYSF 180

Query: 166 TRALLGIAADELHLCGDPAAVPLVQEMLKITGDEVEVKFYERLSPLVPLKVPLGSFSNVR 225
           TRALLGIAADELHLCGDPAAVPL+QE+L ITGDE+EV++YERLSPLVP+KVPL S S+VR
Sbjct: 181 TRALLGIAADELHLCGDPAAVPLIQEILDITGDELEVQYYERLSPLVPMKVPLRSLSDVR 240

Query: 226 NGDCIVTFSRKDIYGLKKKIEREGRHLCSVVYGSLPPETRTRQATMFNDASSEFDVLVAS 285
           NGDCIVTFSR+DIY LKK+IEREG+HLCSVVYGSLPPETRTRQA+MFNDASSEFDVLVAS
Sbjct: 241 NGDCIVTFSRRDIYKLKKRIEREGKHLCSVVYGSLPPETRTRQASMFNDASSEFDVLVAS 300

Query: 286 DAIGMGLNLNISRIIFSTMKKFDGFEMRDLTVPEIKQIAGRAGRYGSNFPVGEVTCMDAD 345
           DAIGMGLNLNISRIIFSTM+KFDGF+MRDLTVPEIKQIAGRAGRYGSNFP+GEVTCM  D
Sbjct: 301 DAIGMGLNLNISRIIFSTMQKFDGFQMRDLTVPEIKQIAGRAGRYGSNFPLGEVTCMSGD 360

Query: 346 DXXXXXXXXXXXXXILERAGLLPTYELMYMYSRLHPKYGFCQVLEHFIDNAKLSENYFIV 405
           D             ILERAGLLP+YEL+YMYSRLHP+ GF QVLEHF+DNAKLSE YFIV
Sbjct: 361 DLPLLHSALDSPSPILERAGLLPSYELLYMYSRLHPQAGFYQVLEHFVDNAKLSEKYFIV 420

Query: 406 NCEQ 409
           NC+Q
Sbjct: 421 NCDQ 424


>Medtr5g006660.1 | ATP-dependent RNA helicase SUPV3L1 | HC |
           chr5:1030691-1021841 | 20130731
          Length = 570

 Score =  690 bits (1781), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/424 (78%), Positives = 371/424 (87%), Gaps = 15/424 (3%)

Query: 1   MSSFFLRRSTVFFSRALTGN-RERFHLYFQFK----------VHPYS----TRTASIRND 45
           M+SF LRR++   +R+LTGN +E+F  YFQ K          +HPYS    + + SIRN+
Sbjct: 1   MASFLLRRNSNLLARSLTGNYKEQFCPYFQAKFECLGAALNSLHPYSRSYGSASGSIRNE 60

Query: 46  FTDLTSPHTWYPQARSKRRRVILHVGPTNSGKTYHALKQLESSASGIYCGPLRLLAWEIA 105
            TD+T PHTWYP AR KRRRV LHVGPTNSGKTY ALKQL+SSASGIYCGPLRLLAWE+A
Sbjct: 61  ITDMTCPHTWYPLARRKRRRVFLHVGPTNSGKTYQALKQLQSSASGIYCGPLRLLAWEVA 120

Query: 106 KRLNKANVPCDLITGQEREEVDGANHRAATVEMADVSSDYQCAVIDEIQMLGCSTRGYSF 165
           KRLNKANVPCDLITGQER+EV+GA+H+A TVEMADVS+DY+CAVIDEIQMLGC+TRGYSF
Sbjct: 121 KRLNKANVPCDLITGQERDEVEGAHHKAVTVEMADVSTDYKCAVIDEIQMLGCNTRGYSF 180

Query: 166 TRALLGIAADELHLCGDPAAVPLVQEMLKITGDEVEVKFYERLSPLVPLKVPLGSFSNVR 225
           TRALLGIAADELHLCGDPAAVPL+QE+L ITGDE+EV++YERLSPLVP+KVPL S S+VR
Sbjct: 181 TRALLGIAADELHLCGDPAAVPLIQEILDITGDELEVQYYERLSPLVPMKVPLRSLSDVR 240

Query: 226 NGDCIVTFSRKDIYGLKKKIEREGRHLCSVVYGSLPPETRTRQATMFNDASSEFDVLVAS 285
           NGDCIVTFSR+DIY LKK+IEREG+HLCSVVYGSLPPETRTRQA+MFNDASSEFDVLVAS
Sbjct: 241 NGDCIVTFSRRDIYKLKKRIEREGKHLCSVVYGSLPPETRTRQASMFNDASSEFDVLVAS 300

Query: 286 DAIGMGLNLNISRIIFSTMKKFDGFEMRDLTVPEIKQIAGRAGRYGSNFPVGEVTCMDAD 345
           DAIGMGLNLNISRIIFSTM+KFDGF+MRDLTVPEIKQIAGRAGRYGSNFP+GEVTCM  D
Sbjct: 301 DAIGMGLNLNISRIIFSTMQKFDGFQMRDLTVPEIKQIAGRAGRYGSNFPLGEVTCMSGD 360

Query: 346 DXXXXXXXXXXXXXILERAGLLPTYELMYMYSRLHPKYGFCQVLEHFIDNAKLSENYFIV 405
           D             ILERAGLLP+YEL+YMYSRLHP+ GF QVLEHF+DNAKLSE YFIV
Sbjct: 361 DLPLLHSALDSPSPILERAGLLPSYELLYMYSRLHPQAGFYQVLEHFVDNAKLSEKYFIV 420

Query: 406 NCEQ 409
           NC+Q
Sbjct: 421 NCDQ 424


>Medtr6g011800.1 | ATP-dependent RNA helicase SUPV3L1 | HC |
           chr6:3521999-3519543 | 20130731
          Length = 818

 Score =  358 bits (920), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 172/384 (44%), Positives = 254/384 (66%), Gaps = 3/384 (0%)

Query: 24  FHLYFQFKVHPYSTRTASIRN--DFTDLTSPHTWYPQARSKRRRVILHVGPTNSGKTYHA 81
           F ++ +F +  ++      R      DLT PHTW+P AR+ +R++I H GPTNSGKTY+A
Sbjct: 263 FPIFVEFCLENFTDEITRFREMVKSADLTMPHTWFPFARAMKRKIIYHCGPTNSGKTYNA 322

Query: 82  LKQLESSASGIYCGPLRLLAWEIAKRLNKANVPCDLITGQEREEVDGANHRAATVEMADV 141
           L++   +  GIYC PLRLLA E+  ++N   V C L+TGQE++ +  +NH A TVEMA  
Sbjct: 323 LQRFMEAKKGIYCSPLRLLAMEVFDKVNAKGVYCSLLTGQEKKYLPFSNHVACTVEMAST 382

Query: 142 SSDYQCAVIDEIQMLGCSTRGYSFTRALLGIAADELHLCGDPAAVPLVQEMLKITGDEVE 201
              Y+ A++DEIQM+    RGY++TRALLG+ ADE+HLCGDP+ + +V+++ + TGD++ 
Sbjct: 383 QELYEVAIVDEIQMMADPYRGYAWTRALLGLMADEIHLCGDPSVLDIVRKICQETGDDLY 442

Query: 202 VKFYERLSPL-VPLKVPLGSFSNVRNGDCIVTFSRKDIYGLKKKIEREGRHLCSVVYGSL 260
            + YER  PL V  K  LG+  N+++GDC+V FSR++I+ +K  IE+   H C V+YG+L
Sbjct: 443 EQHYERFKPLVVEAKTLLGNLENIKSGDCVVAFSRREIFEVKLAIEKHTNHKCCVIYGAL 502

Query: 261 PPETRTRQATMFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGFEMRDLTVPEI 320
           PPETR +QA +FND S+E+DVLVASDA+GMGLNLNI R+IF+ + K++G ++  +   ++
Sbjct: 503 PPETRRQQANLFNDQSNEYDVLVASDAVGMGLNLNIRRVIFNNLSKYNGDKILPVPASQV 562

Query: 321 KQIAGRAGRYGSNFPVGEVTCMDADDXXXXXXXXXXXXXILERAGLLPTYELMYMYSRLH 380
           KQIAGRAGR G  +P G  T +  +D              +E+ GL P YE + +++   
Sbjct: 563 KQIAGRAGRRGCVYPDGLATTLHLEDLDYLIECLKQPFDHVEKVGLFPYYEQVELFAGQL 622

Query: 381 PKYGFCQVLEHFIDNAKLSENYFI 404
               F Q+LE F +N +L  +YF+
Sbjct: 623 SNMTFSQLLEKFGENCRLDGSYFL 646


>Medtr3g462290.1 | RNA helicase, ATP-dependent, SK12/DOB1 protein |
           HC | chr3:24871545-24853513 | 20130731
          Length = 1334

 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 281 VLVASDAIGMGLNLNISRIIFSTMKKFDGFEMRDLTVPEIKQIAGRAGRYGSNFPVGEVT 340
           VL +++   MG+N     ++F T++KFDG E R L   E  Q+AGRAGR G +  +G V 
Sbjct: 725 VLFSTETFAMGVNAPARTVVFDTVRKFDGKEFRQLLPGEYTQMAGRAGRRGLDN-IGTVI 783

Query: 341 CMDADD 346
            M  D+
Sbjct: 784 LMCRDE 789