Miyakogusa Predicted Gene
- Lj1g3v0114230.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v0114230.1 Non Characterized Hit- tr|I1LFV4|I1LFV4_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.48211 PE,79.26,0,P-loop
containing nucleoside triphosphate hydrolases,NULL;
HELICASE_CTER,Helicase, C-terminal; helic,CUFF.25235.1
(554 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr5g006660.1 | ATP-dependent RNA helicase SUPV3L1 | HC | chr5... 931 0.0
Medtr5g006660.2 | ATP-dependent RNA helicase SUPV3L1 | HC | chr5... 828 0.0
Medtr6g011800.1 | ATP-dependent RNA helicase SUPV3L1 | HC | chr6... 412 e-115
Medtr3g462290.1 | RNA helicase, ATP-dependent, SK12/DOB1 protein... 51 3e-06
>Medtr5g006660.1 | ATP-dependent RNA helicase SUPV3L1 | HC |
chr5:1030691-1021841 | 20130731
Length = 570
Score = 931 bits (2406), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 449/570 (78%), Positives = 502/570 (88%), Gaps = 16/570 (2%)
Query: 1 MSSFFLRRSTVFFSRALTGN-RERFHLYFQFK----------VHPYS----TRTASIRND 45
M+SF LRR++ +R+LTGN +E+F YFQ K +HPYS + + SIRN+
Sbjct: 1 MASFLLRRNSNLLARSLTGNYKEQFCPYFQAKFECLGAALNSLHPYSRSYGSASGSIRNE 60
Query: 46 FTDLTSPHTWYPQARSKRRRVILHVGPTNSGKTYHALKQLESSASGIYCGPLRLLAWEIA 105
TD+T PHTWYP AR KRRRV LHVGPTNSGKTY ALKQL+SSASGIYCGPLRLLAWE+A
Sbjct: 61 ITDMTCPHTWYPLARRKRRRVFLHVGPTNSGKTYQALKQLQSSASGIYCGPLRLLAWEVA 120
Query: 106 KRLNKANVPCDLITGQEREEVDGANHRAATVEMADVSSDYQCAVIDEIQMLGCSTRGYSF 165
KRLNKANVPCDLITGQER+EV+GA+H+A TVEMADVS+DY+CAVIDEIQMLGC+TRGYSF
Sbjct: 121 KRLNKANVPCDLITGQERDEVEGAHHKAVTVEMADVSTDYKCAVIDEIQMLGCNTRGYSF 180
Query: 166 TRALLGIAADELHLCGDPAAVPLVQEMLKITGDEVEVKFYERLSPLVPLKVPLGSFSNVR 225
TRALLGIAADELHLCGDPAAVPL+QE+L ITGDE+EV++YERLSPLVP+KVPL S S+VR
Sbjct: 181 TRALLGIAADELHLCGDPAAVPLIQEILDITGDELEVQYYERLSPLVPMKVPLRSLSDVR 240
Query: 226 NGDCIVTFSRKDIYGLKKKIEREGRHLCSVVYGSLPPETRTRQATMFNDASSEFDVLVAS 285
NGDCIVTFSR+DIY LKK+IEREG+HLCSVVYGSLPPETRTRQA+MFNDASSEFDVLVAS
Sbjct: 241 NGDCIVTFSRRDIYKLKKRIEREGKHLCSVVYGSLPPETRTRQASMFNDASSEFDVLVAS 300
Query: 286 DAIGMGLNLNISRIIFSTMKKFDGFEMRDLTVPEIKQIAGRAGRYGSNFPVGEVTCMDAD 345
DAIGMGLNLNISRIIFSTM+KFDGF+MRDLTVPEIKQIAGRAGRYGSNFP+GEVTCM D
Sbjct: 301 DAIGMGLNLNISRIIFSTMQKFDGFQMRDLTVPEIKQIAGRAGRYGSNFPLGEVTCMSGD 360
Query: 346 DXXXXXXXXXXXXXILERAGLLPTYELMYMYSRLHPKYGFCQVLEHFIDNAKLSENYFIV 405
D ILERAGLLP+YEL+YMYSRLHP+ GF QVLEHF+DNAKLSE YFIV
Sbjct: 361 DLPLLHSALDSPSPILERAGLLPSYELLYMYSRLHPQAGFYQVLEHFVDNAKLSEKYFIV 420
Query: 406 NCEQVLKVAAVIDGFPLGLHEKYLFCISPADMDDDISSQGLVQFAENYAKKGLVRLREIF 465
NC+QVLKVAAV+D FPL L +KYLFCISPADMDD+ISSQGL QF ENYAKKGLVRLREIF
Sbjct: 421 NCDQVLKVAAVVDEFPLELRDKYLFCISPADMDDEISSQGLTQFVENYAKKGLVRLREIF 480
Query: 466 TPGTLTVPKTPAALKELESIHKVLDLYVWLSFRLDESFPDRELASSQKSICSMLIEEFLE 525
TPGTL VP TP ALK+LESIHKVLDLYVWLSFRL++SFPD ELA SQK++CSMLIEEFL+
Sbjct: 481 TPGTLKVPTTPQALKDLESIHKVLDLYVWLSFRLEDSFPDHELAKSQKALCSMLIEEFLD 540
Query: 526 RFGWQKPTDRRLPSR-VSNSLLSPHMRQYL 554
R+GWQKP RRLP R VSNSLLS ++RQ+L
Sbjct: 541 RYGWQKPMARRLPLRKVSNSLLSQNLRQHL 570
>Medtr5g006660.2 | ATP-dependent RNA helicase SUPV3L1 | HC |
chr5:1030691-1022392 | 20130731
Length = 524
Score = 828 bits (2138), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/506 (78%), Positives = 443/506 (87%), Gaps = 15/506 (2%)
Query: 1 MSSFFLRRSTVFFSRALTGN-RERFHLYFQFK----------VHPYS----TRTASIRND 45
M+SF LRR++ +R+LTGN +E+F YFQ K +HPYS + + SIRN+
Sbjct: 1 MASFLLRRNSNLLARSLTGNYKEQFCPYFQAKFECLGAALNSLHPYSRSYGSASGSIRNE 60
Query: 46 FTDLTSPHTWYPQARSKRRRVILHVGPTNSGKTYHALKQLESSASGIYCGPLRLLAWEIA 105
TD+T PHTWYP AR KRRRV LHVGPTNSGKTY ALKQL+SSASGIYCGPLRLLAWE+A
Sbjct: 61 ITDMTCPHTWYPLARRKRRRVFLHVGPTNSGKTYQALKQLQSSASGIYCGPLRLLAWEVA 120
Query: 106 KRLNKANVPCDLITGQEREEVDGANHRAATVEMADVSSDYQCAVIDEIQMLGCSTRGYSF 165
KRLNKANVPCDLITGQER+EV+GA+H+A TVEMADVS+DY+CAVIDEIQMLGC+TRGYSF
Sbjct: 121 KRLNKANVPCDLITGQERDEVEGAHHKAVTVEMADVSTDYKCAVIDEIQMLGCNTRGYSF 180
Query: 166 TRALLGIAADELHLCGDPAAVPLVQEMLKITGDEVEVKFYERLSPLVPLKVPLGSFSNVR 225
TRALLGIAADELHLCGDPAAVPL+QE+L ITGDE+EV++YERLSPLVP+KVPL S S+VR
Sbjct: 181 TRALLGIAADELHLCGDPAAVPLIQEILDITGDELEVQYYERLSPLVPMKVPLRSLSDVR 240
Query: 226 NGDCIVTFSRKDIYGLKKKIEREGRHLCSVVYGSLPPETRTRQATMFNDASSEFDVLVAS 285
NGDCIVTFSR+DIY LKK+IEREG+HLCSVVYGSLPPETRTRQA+MFNDASSEFDVLVAS
Sbjct: 241 NGDCIVTFSRRDIYKLKKRIEREGKHLCSVVYGSLPPETRTRQASMFNDASSEFDVLVAS 300
Query: 286 DAIGMGLNLNISRIIFSTMKKFDGFEMRDLTVPEIKQIAGRAGRYGSNFPVGEVTCMDAD 345
DAIGMGLNLNISRIIFSTM+KFDGF+MRDLTVPEIKQIAGRAGRYGSNFP+GEVTCM D
Sbjct: 301 DAIGMGLNLNISRIIFSTMQKFDGFQMRDLTVPEIKQIAGRAGRYGSNFPLGEVTCMSGD 360
Query: 346 DXXXXXXXXXXXXXILERAGLLPTYELMYMYSRLHPKYGFCQVLEHFIDNAKLSENYFIV 405
D ILERAGLLP+YEL+YMYSRLHP+ GF QVLEHF+DNAKLSE YFIV
Sbjct: 361 DLPLLHSALDSPSPILERAGLLPSYELLYMYSRLHPQAGFYQVLEHFVDNAKLSEKYFIV 420
Query: 406 NCEQVLKVAAVIDGFPLGLHEKYLFCISPADMDDDISSQGLVQFAENYAKKGLVRLREIF 465
NC+QVLKVAAV+D FPL L +KYLFCISPADMDD+ISSQGL QF ENYAKKGLVRLREIF
Sbjct: 421 NCDQVLKVAAVVDEFPLELRDKYLFCISPADMDDEISSQGLTQFVENYAKKGLVRLREIF 480
Query: 466 TPGTLTVPKTPAALKELESIHKVLDL 491
TPGTL VP TP ALK+LESIHKV +
Sbjct: 481 TPGTLKVPTTPQALKDLESIHKVFSV 506
>Medtr6g011800.1 | ATP-dependent RNA helicase SUPV3L1 | HC |
chr6:3521999-3519543 | 20130731
Length = 818
Score = 412 bits (1058), Expect = e-115, Method: Compositional matrix adjust.
Identities = 211/530 (39%), Positives = 328/530 (61%), Gaps = 16/530 (3%)
Query: 24 FHLYFQFKVHPYSTRTASIRN--DFTDLTSPHTWYPQARSKRRRVILHVGPTNSGKTYHA 81
F ++ +F + ++ R DLT PHTW+P AR+ +R++I H GPTNSGKTY+A
Sbjct: 263 FPIFVEFCLENFTDEITRFREMVKSADLTMPHTWFPFARAMKRKIIYHCGPTNSGKTYNA 322
Query: 82 LKQLESSASGIYCGPLRLLAWEIAKRLNKANVPCDLITGQEREEVDGANHRAATVEMADV 141
L++ + GIYC PLRLLA E+ ++N V C L+TGQE++ + +NH A TVEMA
Sbjct: 323 LQRFMEAKKGIYCSPLRLLAMEVFDKVNAKGVYCSLLTGQEKKYLPFSNHVACTVEMAST 382
Query: 142 SSDYQCAVIDEIQMLGCSTRGYSFTRALLGIAADELHLCGDPAAVPLVQEMLKITGDEVE 201
Y+ A++DEIQM+ RGY++TRALLG+ ADE+HLCGDP+ + +V+++ + TGD++
Sbjct: 383 QELYEVAIVDEIQMMADPYRGYAWTRALLGLMADEIHLCGDPSVLDIVRKICQETGDDLY 442
Query: 202 VKFYERLSPL-VPLKVPLGSFSNVRNGDCIVTFSRKDIYGLKKKIEREGRHLCSVVYGSL 260
+ YER PL V K LG+ N+++GDC+V FSR++I+ +K IE+ H C V+YG+L
Sbjct: 443 EQHYERFKPLVVEAKTLLGNLENIKSGDCVVAFSRREIFEVKLAIEKHTNHKCCVIYGAL 502
Query: 261 PPETRTRQATMFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGFEMRDLTVPEI 320
PPETR +QA +FND S+E+DVLVASDA+GMGLNLNI R+IF+ + K++G ++ + ++
Sbjct: 503 PPETRRQQANLFNDQSNEYDVLVASDAVGMGLNLNIRRVIFNNLSKYNGDKILPVPASQV 562
Query: 321 KQIAGRAGRYGSNFPVGEVTCMDADDXXXXXXXXXXXXXILERAGLLPTYELMYMYSRLH 380
KQIAGRAGR G +P G T + +D +E+ GL P YE + +++
Sbjct: 563 KQIAGRAGRRGCVYPDGLATTLHLEDLDYLIECLKQPFDHVEKVGLFPYYEQVELFAGQL 622
Query: 381 PKYGFCQVLEHFIDNAKLSENYFIVNCEQVLKVAAVIDGFP-LGLHEKYLFCISPADMDD 439
F Q+LE F +N +L +YF+ + + K++ +++ P L L E++ FC +P ++ D
Sbjct: 623 SNMTFSQLLEKFGENCRLDGSYFLCRHDHIKKISNMLERIPGLSLEERFNFCFAPINVRD 682
Query: 440 DISSQGLVQFAENYAKKGLVRLREIFTPGTLTVPKTPA----ALKELESIHKVLDLYVWL 495
+ L++FA + +K V + + +PK A L +LES H+VL Y+WL
Sbjct: 683 PKAMYHLLRFATAFGQKVPVNI-------AMGMPKCSARNDSELLDLESRHQVLSSYMWL 735
Query: 496 SFRLD-ESFPDRELASSQKSICSMLIEEFLERFGWQKPTDRRLPSRVSNS 544
S D E FP E A + + ++L+ + L + W+ + R + ++S
Sbjct: 736 SNHFDKEKFPYAEKAQAMAADIAILLAQSLRKADWKPESRGRGKPKAADS 785
>Medtr3g462290.1 | RNA helicase, ATP-dependent, SK12/DOB1 protein |
HC | chr3:24871545-24853513 | 20130731
Length = 1334
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 281 VLVASDAIGMGLNLNISRIIFSTMKKFDGFEMRDLTVPEIKQIAGRAGRYGSNFPVGEVT 340
VL +++ MG+N ++F T++KFDG E R L E Q+AGRAGR G + +G V
Sbjct: 725 VLFSTETFAMGVNAPARTVVFDTVRKFDGKEFRQLLPGEYTQMAGRAGRRGLD-NIGTVI 783
Query: 341 CMDADD 346
M D+
Sbjct: 784 LMCRDE 789