Miyakogusa Predicted Gene

Lj1g3v0112940.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0112940.2 Non Characterized Hit- tr|H3HN80|H3HN80_STRPU
Uncharacterized protein OS=Strongylocentrotus
purpurat,34.55,0.0000000003,coiled-coil,NULL,CUFF.25221.2
         (168 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g068700.1 | hypothetical protein | HC | chr4:25754576-2575...   291   2e-79
Medtr1g102640.1 | hypothetical protein | HC | chr1:46379805-4638...   260   5e-70

>Medtr4g068700.1 | hypothetical protein | HC |
           chr4:25754576-25758173 | 20130731
          Length = 249

 Score =  291 bits (744), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 148/170 (87%), Positives = 157/170 (92%), Gaps = 2/170 (1%)

Query: 1   MSMGSESSWVGKKPVKRIGGMSDALSIASDLGFSVSSLP--THQEALQNPSTATGEKGED 58
           MSM +ESSWVG+K VKRIGGMSDALSIA+DLGFSVSS    TH+     P+T+TGEKGED
Sbjct: 1   MSMTNESSWVGRKAVKRIGGMSDALSIAADLGFSVSSPSSSTHESLHNPPTTSTGEKGED 60

Query: 59  LIKVLRELTTVQRKIADLQVELQGRKDDKNVAHLTHVSEMEKKIETLEWITTILKDVIQN 118
           LI+VLRELT+VQRKIADLQVELQGRKDDKNVAHLTHVSEMEKKIETL+ ITTILKDVI N
Sbjct: 61  LIRVLRELTSVQRKIADLQVELQGRKDDKNVAHLTHVSEMEKKIETLDRITTILKDVIHN 120

Query: 119 KDRIIARLQQPYSLDCIPVEAEYQKQFSELLMKAASDYGALTASVADFQW 168
           KDRIIARLQQPYSLDCIPVEAEYQKQFSELLMKAASDYGALTASVADFQW
Sbjct: 121 KDRIIARLQQPYSLDCIPVEAEYQKQFSELLMKAASDYGALTASVADFQW 170


>Medtr1g102640.1 | hypothetical protein | HC |
           chr1:46379805-46382400 | 20130731
          Length = 226

 Score =  260 bits (664), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 131/148 (88%), Positives = 137/148 (92%), Gaps = 1/148 (0%)

Query: 21  MSDALSIASDLGFSVSSLPTHQEALQNPSTATGEKGEDLIKVLRELTTVQRKIADLQVEL 80
           MSDALSIA+DLG+SVS+ P+ +E  QN S ATGEKGE LIKVLRELTTVQRKIADLQVEL
Sbjct: 1   MSDALSIATDLGYSVST-PSSKEGRQNSSPATGEKGEVLIKVLRELTTVQRKIADLQVEL 59

Query: 81  QGRKDDKNVAHLTHVSEMEKKIETLEWITTILKDVIQNKDRIIARLQQPYSLDCIPVEAE 140
           QGRKDDK VAHLTHVSEMEKKIETL  ITTILKDVIQNKDRIIARLQQPYSLDCIPVEA 
Sbjct: 60  QGRKDDKTVAHLTHVSEMEKKIETLSRITTILKDVIQNKDRIIARLQQPYSLDCIPVEAG 119

Query: 141 YQKQFSELLMKAASDYGALTASVADFQW 168
           YQKQFSELLMKAA+DYGALTASVADFQW
Sbjct: 120 YQKQFSELLMKAANDYGALTASVADFQW 147