Miyakogusa Predicted Gene

Lj1g3v0112700.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0112700.2 Non Characterized Hit- tr|B9S4N1|B9S4N1_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,33.53,0.000000003,tify,Tify; CCT_2,CO/COL/TOC1, conserved site; no
description,Tify; TIFY,Tify; seg,NULL,CUFF.25219.2
         (340 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g102900.2 | divergent CCT motif protein | HC | chr1:465138...   398   e-111
Medtr1g102900.1 | divergent CCT motif protein | HC | chr1:465138...   389   e-108
Medtr1g102900.3 | divergent CCT motif protein | HC | chr1:465138...   387   e-107
Medtr1g102900.5 | divergent CCT motif protein | HC | chr1:465138...   318   3e-87
Medtr1g102900.4 | divergent CCT motif protein | HC | chr1:465138...   287   9e-78

>Medtr1g102900.2 | divergent CCT motif protein | HC |
           chr1:46513826-46507169 | 20130731
          Length = 330

 Score =  398 bits (1022), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 218/349 (62%), Positives = 237/349 (67%), Gaps = 32/349 (9%)

Query: 1   MNGGXXXXXXXXXFRSILDKPLKHLTEDDISQLTREDCRRFLKEKGMRRPSWNKSQAIQQ 60
           MNGG         FRSILD+PL  LTEDDISQLTREDCRRFLK+KGMRRPSWNKSQAIQQ
Sbjct: 1   MNGGSTVS-----FRSILDRPLNQLTEDDISQLTREDCRRFLKDKGMRRPSWNKSQAIQQ 55

Query: 61  VISLKALLEPTDEDXXXXXXXXXXXXXXXXXXXXXGRNLNXXXXXXXXXXXXXXXXXXXX 120
           VISLKALLEPTD+D                     G  ++                    
Sbjct: 56  VISLKALLEPTDDDIPATV----------------GVGVSSAIHHHHHHHPPQPPPKALD 99

Query: 121 PQ---------KSPSAEKLPETNDANVVS-PRGCASSGSFGQMTIFYCGKVNVYDGVSPD 170
           P+          SP AE+  ETNDANVV+ P GCA SGSFGQMTIFYCGKVNVYDGVSPD
Sbjct: 100 PEDTALELQKSTSPVAERPTETNDANVVNNPGGCAPSGSFGQMTIFYCGKVNVYDGVSPD 159

Query: 171 KARSIMQLAAS-PVQCPQDDPSNKNAAVWASTCPSLMDKDALFPVDTAILQVAQTDKMVE 229
           KARSIMQLAA+ P   PQD+PSNKNAAVWAS C   +DK+ LFP DTAILQVAQTDKMVE
Sbjct: 160 KARSIMQLAAACPSSFPQDNPSNKNAAVWASPCNLPIDKEVLFPTDTAILQVAQTDKMVE 219

Query: 230 YPLQYREKVSIPRDADVEGQASRKVSVQRYLEXXXXXXXXXXXXSTSVTSSNFDMYVNLP 289
           YPLQYREK S  RDADVEGQASRKVS+QRYLE             T +TSSNF+MY+NLP
Sbjct: 220 YPLQYREKGSTARDADVEGQASRKVSLQRYLEKRKDRGRSKGKKLTGITSSNFEMYLNLP 279

Query: 290 VKGHAXXXXXXXXXXXXPPQPRLPVVSGGSADNQLKVSLPIDLNDKDVQ 338
           VK HA            PPQPRLP+VS GSA+NQ KV+LPIDLNDKDVQ
Sbjct: 280 VKLHASNGNSSRSSTDSPPQPRLPLVSSGSAENQPKVTLPIDLNDKDVQ 328


>Medtr1g102900.1 | divergent CCT motif protein | HC |
           chr1:46513826-46507169 | 20130731
          Length = 328

 Score =  389 bits (998), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 216/349 (61%), Positives = 235/349 (67%), Gaps = 34/349 (9%)

Query: 1   MNGGXXXXXXXXXFRSILDKPLKHLTEDDISQLTREDCRRFLKEKGMRRPSWNKSQAIQQ 60
           MNGG         FRSILD+PL  LTEDDISQLTREDCRRFLK+KGMRRPSWNKSQAIQQ
Sbjct: 1   MNGGSTVS-----FRSILDRPLNQLTEDDISQLTREDCRRFLKDKGMRRPSWNKSQAIQQ 55

Query: 61  VISLKALLEPTDEDXXXXXXXXXXXXXXXXXXXXXGRNLNXXXXXXXXXXXXXXXXXXXX 120
           VISLKALLEPTD+D                     G  ++                    
Sbjct: 56  VISLKALLEPTDDDIPATV----------------GVGVSSAIHHHHHHHPPQPPPKALD 99

Query: 121 PQ---------KSPSAEKLPETNDANVVS-PRGCASSGSFGQMTIFYCGKVNVYDGVSPD 170
           P+          SP AE+  ETNDANVV+ P GCA SGSFGQMTIFYCGKVNVYDGVSPD
Sbjct: 100 PEDTALELQKSTSPVAERPTETNDANVVNNPGGCAPSGSFGQMTIFYCGKVNVYDGVSPD 159

Query: 171 KARSIMQLAAS-PVQCPQDDPSNKNAAVWASTCPSLMDKDALFPVDTAILQVAQTDKMVE 229
           KARSIMQLAA+ P   PQD+PSNKNAAVWAS C   +DK+ LFP DTAILQVAQTDKMVE
Sbjct: 160 KARSIMQLAAACPSSFPQDNPSNKNAAVWASPCNLPIDKEVLFPTDTAILQVAQTDKMVE 219

Query: 230 YPLQYREKVSIPRDADVEGQASRKVSVQRYLEXXXXXXXXXXXXSTSVTSSNFDMYVNLP 289
           YPLQYREK S  RDA  EGQASRKVS+QRYLE             T +TSSNF+MY+NLP
Sbjct: 220 YPLQYREKGSTARDA--EGQASRKVSLQRYLEKRKDRGRSKGKKLTGITSSNFEMYLNLP 277

Query: 290 VKGHAXXXXXXXXXXXXPPQPRLPVVSGGSADNQLKVSLPIDLNDKDVQ 338
           VK HA            PPQPRLP+VS GSA+NQ KV+LPIDLNDKDVQ
Sbjct: 278 VKLHASNGNSSRSSTDSPPQPRLPLVSSGSAENQPKVTLPIDLNDKDVQ 326


>Medtr1g102900.3 | divergent CCT motif protein | HC |
           chr1:46513826-46507169 | 20130731
          Length = 330

 Score =  387 bits (993), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 212/340 (62%), Positives = 231/340 (67%), Gaps = 16/340 (4%)

Query: 1   MNGGXXXXXXXXXFRSILDKPLKHLTEDDISQLTREDCRRFLKEKGMRRPSWNKSQAIQQ 60
           MNGG         FRSILD+PL  LTEDDISQLTREDCRRFLK+KGMRRPSWNKSQAIQQ
Sbjct: 1   MNGGSTVS-----FRSILDRPLNQLTEDDISQLTREDCRRFLKDKGMRRPSWNKSQAIQQ 55

Query: 61  VISLKALLEPTDEDXXXXXXXXXXXXXXXXXXXXXGRNLNXXXXXXXXXXXXXXXXXXXX 120
           VISLKALLEPTD+D                      +                       
Sbjct: 56  VISLKALLEPTDDDIPATVGVGVSSAIHHHHHHHPPQPPPKALDPEDTALELQKST---- 111

Query: 121 PQKSPSAEKLPETNDANVVS-PRGCASSGSFGQMTIFYCGKVNVYDGVSPDKARSIMQLA 179
              SP AE+  ETNDANVV+ P GCA SGSFGQMTIFYCGKVNVYDGVSPDKARSIMQLA
Sbjct: 112 ---SPVAERPTETNDANVVNNPGGCAPSGSFGQMTIFYCGKVNVYDGVSPDKARSIMQLA 168

Query: 180 AS-PVQCPQDDPSNKNAAVWASTCPSLMDKDALFPVDTAILQVAQTDKMVEYPLQYREKV 238
           A+ P   PQD+PSNKNAAVWAS C   +DK+ LFP DTAILQVAQTDKMVEYPLQYREK 
Sbjct: 169 AACPSSFPQDNPSNKNAAVWASPCNLPIDKEVLFPTDTAILQVAQTDKMVEYPLQYREKG 228

Query: 239 SIPRDADVEGQASRKVSVQRYLEXXXXXXXXXXXXSTSVTSSNFDMYVNLPVKGHAXXXX 298
           S  RDA  EGQASRKVS+QRYLE             T +TSSNF+MY+NLPVK HA    
Sbjct: 229 STARDA--EGQASRKVSLQRYLEKRKDRGRSKGKKLTGITSSNFEMYLNLPVKLHASNGN 286

Query: 299 XXXXXXXXPPQPRLPVVSGGSADNQLKVSLPIDLNDKDVQ 338
                   PPQPRLP+VS GSA+NQ KV+LPIDLNDKD++
Sbjct: 287 SSRSSTDSPPQPRLPLVSSGSAENQPKVTLPIDLNDKDLK 326


>Medtr1g102900.5 | divergent CCT motif protein | HC |
           chr1:46513826-46508734 | 20130731
          Length = 260

 Score =  318 bits (816), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 176/272 (64%), Positives = 189/272 (69%), Gaps = 32/272 (11%)

Query: 1   MNGGXXXXXXXXXFRSILDKPLKHLTEDDISQLTREDCRRFLKEKGMRRPSWNKSQAIQQ 60
           MNGG         FRSILD+PL  LTEDDISQLTREDCRRFLK+KGMRRPSWNKSQAIQQ
Sbjct: 1   MNGGSTVS-----FRSILDRPLNQLTEDDISQLTREDCRRFLKDKGMRRPSWNKSQAIQQ 55

Query: 61  VISLKALLEPTDEDXXXXXXXXXXXXXXXXXXXXXGRNLNXXXXXXXXXXXXXXXXXXXX 120
           VISLKALLEPTD+D                     G  ++                    
Sbjct: 56  VISLKALLEPTDDDIPATV----------------GVGVSSAIHHHHHHHPPQPPPKALD 99

Query: 121 PQ---------KSPSAEKLPETNDANVVS-PRGCASSGSFGQMTIFYCGKVNVYDGVSPD 170
           P+          SP AE+  ETNDANVV+ P GCA SGSFGQMTIFYCGKVNVYDGVSPD
Sbjct: 100 PEDTALELQKSTSPVAERPTETNDANVVNNPGGCAPSGSFGQMTIFYCGKVNVYDGVSPD 159

Query: 171 KARSIMQLAAS-PVQCPQDDPSNKNAAVWASTCPSLMDKDALFPVDTAILQVAQTDKMVE 229
           KARSIMQLAA+ P   PQD+PSNKNAAVWAS C   +DK+ LFP DTAILQVAQTDKMVE
Sbjct: 160 KARSIMQLAAACPSSFPQDNPSNKNAAVWASPCNLPIDKEVLFPTDTAILQVAQTDKMVE 219

Query: 230 YPLQYREKVSIPRDADVEGQASRKVSVQRYLE 261
           YPLQYREK S  RDADVEGQASRKVS+QRYLE
Sbjct: 220 YPLQYREKGSTARDADVEGQASRKVSLQRYLE 251


>Medtr1g102900.4 | divergent CCT motif protein | HC |
           chr1:46513826-46507169 | 20130731
          Length = 238

 Score =  287 bits (735), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 160/255 (62%), Positives = 172/255 (67%), Gaps = 32/255 (12%)

Query: 1   MNGGXXXXXXXXXFRSILDKPLKHLTEDDISQLTREDCRRFLKEKGMRRPSWNKSQAIQQ 60
           MNGG         FRSILD+PL  LTEDDISQLTREDCRRFLK+KGMRRPSWNKSQAIQQ
Sbjct: 1   MNGGSTVS-----FRSILDRPLNQLTEDDISQLTREDCRRFLKDKGMRRPSWNKSQAIQQ 55

Query: 61  VISLKALLEPTDEDXXXXXXXXXXXXXXXXXXXXXGRNLNXXXXXXXXXXXXXXXXXXXX 120
           VISLKALLEPTD+D                     G  ++                    
Sbjct: 56  VISLKALLEPTDDDIPATV----------------GVGVSSAIHHHHHHHPPQPPPKALD 99

Query: 121 PQ---------KSPSAEKLPETNDANVVS-PRGCASSGSFGQMTIFYCGKVNVYDGVSPD 170
           P+          SP AE+  ETNDANVV+ P GCA SGSFGQMTIFYCGKVNVYDGVSPD
Sbjct: 100 PEDTALELQKSTSPVAERPTETNDANVVNNPGGCAPSGSFGQMTIFYCGKVNVYDGVSPD 159

Query: 171 KARSIMQLAAS-PVQCPQDDPSNKNAAVWASTCPSLMDKDALFPVDTAILQVAQTDKMVE 229
           KARSIMQLAA+ P   PQD+PSNKNAAVWAS C   +DK+ LFP DTAILQVAQTDKMVE
Sbjct: 160 KARSIMQLAAACPSSFPQDNPSNKNAAVWASPCNLPIDKEVLFPTDTAILQVAQTDKMVE 219

Query: 230 YPLQYREKVSIPRDA 244
           YPLQYREK S  RDA
Sbjct: 220 YPLQYREKGSTARDA 234