Miyakogusa Predicted Gene

Lj1g3v0101540.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0101540.1 tr|Q1WK56|Q1WK56_LOTJA CYC3 OS=Lotus japonicus
PE=2 SV=1,99.46,0,TCP,Transcription factor TCP subgroup; R,CYC/TB1, R
domain; seg,NULL; TCP,Transcription factor, TCP,gene.g28833.t1.1
         (370 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g103380.1 | TCP family transcription factor | HC | chr1:46...   180   2e-45
Medtr7g018500.1 | TCP family transcription factor | HC | chr7:60...   114   2e-25
Medtr6g017055.1 | TCP family transcription factor | HC | chr6:67...   113   3e-25
Medtr4g111935.1 | TCP family transcription factor | HC | chr4:46...    83   4e-16
Medtr8g463380.1 | TCP family transcription factor | HC | chr8:22...    82   8e-16
Medtr4g079580.1 | TCP family transcription factor | HC | chr4:30...    82   8e-16
Medtr2g090960.2 | TCP family transcription factor | HC | chr2:39...    80   3e-15
Medtr2g090960.1 | TCP family transcription factor | HC | chr2:39...    80   3e-15
Medtr2g078200.1 | TCP family transcription factor | HC | chr2:32...    78   1e-14
Medtr6g015350.1 | TCP family transcription factor | HC | chr6:50...    68   2e-11
Medtr4g109660.1 | TCP family transcription factor | HC | chr4:45...    67   3e-11
Medtr7g015010.1 | TCP family transcription factor | HC | chr7:45...    65   9e-11
Medtr3g026050.1 | TCP family transcription factor | HC | chr3:79...    62   9e-10

>Medtr1g103380.1 | TCP family transcription factor | HC |
           chr1:46797920-46794627 | 20130731
          Length = 489

 Score =  180 bits (456), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 154/388 (39%), Positives = 184/388 (47%), Gaps = 66/388 (17%)

Query: 31  DPENINNFP-------QDPLVSHPFIHDSNINDAPIFTHDTTNLAVSVSHLLEQQDPLGG 83
           +PEN N+FP        D L+S PF   S  +D   F  DT     + + + EQ +    
Sbjct: 120 NPEN-NDFPNNNTTLLDDSLLSIPFT--STHHDVVPFP-DTNFADCNNTAMFEQDNGYNF 175

Query: 84  NNYASSIVPNFLRXXXXXXXXXXXXXXXTTKKDRHSKIHTSQGLRDRRVRLSSEIARKFF 143
              +S  +PNF+                  KKDRHSKIHTSQGLRDRRVRLSSEIARKFF
Sbjct: 176 GVTSSFPIPNFV-----VTEQKQPATVIGGKKDRHSKIHTSQGLRDRRVRLSSEIARKFF 230

Query: 144 DLQDMLEFDKPSNTLEWLFTKSESAIQELARXXXXXXXXXXXXXXX-XXXXXLFGGGDNH 202
           DLQDMLEFDKPSNTLEWLFTKS++AI+ELAR                             
Sbjct: 231 DLQDMLEFDKPSNTLEWLFTKSDTAIKELARTKNAACYNNNNNDNSPFFDSNSNKSFSGG 290

Query: 203 NGTNSIRGRGNSKLKWTTQRDQDVCVLQNKKESXXXXXXXXXXXTFYKML-------EDQ 255
            G +        KLKWT +        + KKES           T YKM        E+ 
Sbjct: 291 GGGDGSCSSKGRKLKWTQKE-------ETKKESRERARARARERTCYKMCSSGRMQQEEI 343

Query: 256 RLPA------NTTQIMHQLRSS--SPI------------QLLQ------PYPHLMDNSEA 289
           R P       NT Q++ QL SS  SP+            QLLQ      P  H   N   
Sbjct: 344 RYPGPGADSTNTQQMLQQLISSSTSPVDSTETEAYARWRQLLQLQTYSNPSFHNHHNLLD 403

Query: 290 VSXXXXXXXFNVIEESIMIKRNMMSSNS--HPHENHHLAIPNKEAGFNNNYIDYPLLQPY 347
                    FNVIEESIMIKRNMMS+ S  + H+N    IP +   FN+N  DY L    
Sbjct: 404 SEIPRDHGGFNVIEESIMIKRNMMSATSSQYHHQNLIPTIPKELPSFNHNINDYSLFP-- 461

Query: 348 STTPNWEIAT-----MNMNLSTCFMNQW 370
            +TPNWE ++       MNLSTCF+N W
Sbjct: 462 CSTPNWETSSNFCGIATMNLSTCFLNPW 489


>Medtr7g018500.1 | TCP family transcription factor | HC |
           chr7:6031315-6033168 | 20130731
          Length = 374

 Score =  114 bits (285), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/137 (52%), Positives = 83/137 (60%), Gaps = 13/137 (9%)

Query: 38  FPQDPLVSHPFIHDSNINDAPIFTHDTTNLAVSVSHLLEQQDPLGGNNYASSIVPNFLRX 97
           F  DP +S P+   ++ N  PI     TN AV+    + +QD  G ++Y  S   N L  
Sbjct: 57  FLHDPTISVPYTQTTH-NHVPINPDTLTNWAVADYAAMLKQDLSGSSHYNLS---NLL-- 110

Query: 98  XXXXXXXXXXXXXXTTKKDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNT 157
                           KKDRHSKIHTSQGLRDRRVRLS EIARKFFDLQDML FDK SNT
Sbjct: 111 -------TKKPVKKPAKKDRHSKIHTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNT 163

Query: 158 LEWLFTKSESAIQELAR 174
           LEWLF KS+ AI+EL R
Sbjct: 164 LEWLFNKSKEAIEELTR 180


>Medtr6g017055.1 | TCP family transcription factor | HC |
           chr6:6710788-6713192 | 20130731
          Length = 409

 Score =  113 bits (282), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 104/295 (35%), Positives = 136/295 (46%), Gaps = 56/295 (18%)

Query: 113 TKKDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTKSESAIQEL 172
            KKDRHSKI+TSQGLRDRRVRLS EIARKFFDLQDML FDK SNTL+WLFTKS+ AI++L
Sbjct: 125 VKKDRHSKIYTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLDWLFTKSKKAIKDL 184

Query: 173 ARXXXXXXXXXXXXXXXXXXXXLFGGGDNHNGTNS-------IRGRGNSKLKWTTQRDQD 225
            +                       GGD  + T+S       I    +S LK   Q  + 
Sbjct: 185 TKSKQRNNNSEV-------------GGDAKSFTSSSDCEDSEIATNNSSNLK---QHKEG 228

Query: 226 VCVLQNKKESXXXXXXXXXXXTFYKMLEDQ-----RLPANTTQIMHQLRSSSPIQLLQPY 280
                 +K+               KM E +     R    T+  +  +R    ++L + Y
Sbjct: 229 AGSKHEEKKLKRVQIKEPACVRASKMKESREKARARARERTSNKISNIRGVQEVELKKKY 288

Query: 281 P-HLMDNSEAVSXXXXXXXFNVIEESIMIKRN-----MMSSNSHPHENHHLAIPNKEA-- 332
             +L    +          FNVIEESI+IKR      M+S + H    H   +  KE+  
Sbjct: 289 ENNLQAFQQDHHSEGPRNDFNVIEESIVIKRKLKPSMMVSHHHHHPHYHQSHVIPKESST 348

Query: 333 GFNNNYIDYPLLQPYSTTPNWE--------------IATMNMNLST---CFMNQW 370
            FNNN  D+  L   +++PNW+               A  +MNLST    F   W
Sbjct: 349 SFNNNG-DFNFLP--NSSPNWDANNNGTSSTNRSTFCAIASMNLSTGLQIFGKSW 400


>Medtr4g111935.1 | TCP family transcription factor | HC |
           chr4:46280786-46279251 | 20130731
          Length = 388

 Score = 83.2 bits (204), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 37/63 (58%), Positives = 52/63 (82%)

Query: 112 TTKKDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTKSESAIQE 171
           ++K+DRHSKI T++GLRDRR+RLS E+A++FF LQDML F+K S T++WL  +S+  I+ 
Sbjct: 130 SSKRDRHSKIKTAKGLRDRRMRLSLEVAKRFFGLQDMLGFEKASKTVDWLLNQSKLEIKL 189

Query: 172 LAR 174
           LAR
Sbjct: 190 LAR 192


>Medtr8g463380.1 | TCP family transcription factor | HC |
           chr8:22326723-22329800 | 20130731
          Length = 433

 Score = 82.0 bits (201), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 49/62 (79%)

Query: 112 TTKKDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTKSESAIQE 171
           T +KDRHSK+ T++G RDRRVRLS+  A +F+D+QD L +D+PS  ++WL  K++SAI E
Sbjct: 52  TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDE 111

Query: 172 LA 173
           LA
Sbjct: 112 LA 113


>Medtr4g079580.1 | TCP family transcription factor | HC |
           chr4:30768533-30767465 | 20130731
          Length = 335

 Score = 82.0 bits (201), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 50/62 (80%)

Query: 112 TTKKDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTKSESAIQE 171
           T KKDRHSK++TS+G RDRRVRLS+  A +F+D+QD L +D+PS  ++WL  K++S+I +
Sbjct: 20  TGKKDRHSKVYTSKGPRDRRVRLSAHTAIEFYDVQDRLGYDRPSKAVDWLIKKAKSSIDK 79

Query: 172 LA 173
           LA
Sbjct: 80  LA 81


>Medtr2g090960.2 | TCP family transcription factor | HC |
           chr2:39078457-39076249 | 20130731
          Length = 329

 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 49/61 (80%)

Query: 112 TTKKDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTKSESAIQE 171
           T +KDRHSK++T++G RDRRVRLS+  A +F+D+QD L +D+PS  ++WL  K++SAI +
Sbjct: 22  TGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDK 81

Query: 172 L 172
           L
Sbjct: 82  L 82


>Medtr2g090960.1 | TCP family transcription factor | HC |
           chr2:39078457-39075847 | 20130731
          Length = 329

 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 49/61 (80%)

Query: 112 TTKKDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTKSESAIQE 171
           T +KDRHSK++T++G RDRRVRLS+  A +F+D+QD L +D+PS  ++WL  K++SAI +
Sbjct: 22  TGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDK 81

Query: 172 L 172
           L
Sbjct: 82  L 82


>Medtr2g078200.1 | TCP family transcription factor | HC |
           chr2:32505911-32507609 | 20130731
          Length = 294

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 34/60 (56%), Positives = 47/60 (78%)

Query: 114 KKDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTKSESAIQELA 173
           +KDRHSK+ T++G RDRRVRLS+  A +F+D+QD L FD+PS  L+WL  K++ AI +LA
Sbjct: 20  RKDRHSKVCTAKGPRDRRVRLSAHTAIEFYDVQDRLGFDRPSKALDWLINKAKPAIDQLA 79


>Medtr6g015350.1 | TCP family transcription factor | HC |
           chr6:5010976-5013085 | 20130731
          Length = 333

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 41/58 (70%)

Query: 115 KDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTKSESAIQEL 172
           KDRHSK++T +GLRDRRVRLS + A   +DLQD L  ++PS  ++WL   ++  I EL
Sbjct: 50  KDRHSKVYTIKGLRDRRVRLSIQTAIHLYDLQDRLGLNQPSKVVDWLLNIAKDEIDEL 107


>Medtr4g109660.1 | TCP family transcription factor | HC |
           chr4:45588798-45589718 | 20130731
          Length = 306

 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 40/58 (68%)

Query: 115 KDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTKSESAIQEL 172
           KDRHSK+ T +GLRDRR+RLS   A + +DLQD L   +PS  +EWL   ++S I +L
Sbjct: 57  KDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVVEWLIEATQSDIDKL 114


>Medtr7g015010.1 | TCP family transcription factor | HC |
           chr7:4515349-4517203 | 20130731
          Length = 351

 Score = 65.5 bits (158), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 40/58 (68%)

Query: 115 KDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTKSESAIQEL 172
           KDRHSK+ T +GLRDRRVRLS   A + +DLQD L  ++PS  ++WL   ++  I +L
Sbjct: 58  KDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKQDIDQL 115


>Medtr3g026050.1 | TCP family transcription factor | HC |
           chr3:7969037-7970349 | 20130731
          Length = 385

 Score = 62.0 bits (149), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 39/58 (67%)

Query: 115 KDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTKSESAIQEL 172
           KDRHSK+ T +GLRDRR+RLS   A + +DLQD L   +PS  ++WL   ++  I +L
Sbjct: 58  KDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLGLGQPSKVIDWLLEATKLDIDKL 115