Miyakogusa Predicted Gene

Lj1g3v0096370.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0096370.1 Non Characterized Hit- tr|A3C4Z6|A3C4Z6_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,29.3,0.0000000003,seg,NULL,CUFF.25199.1
         (276 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g006410.1 | hypothetical protein | HC | chr5:907244-901222...   326   2e-89

>Medtr5g006410.1 | hypothetical protein | HC | chr5:907244-901222 |
           20130731
          Length = 271

 Score =  326 bits (835), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 161/275 (58%), Positives = 199/275 (72%), Gaps = 8/275 (2%)

Query: 1   MGDALFDLEQVLITKRGKLSIEEARVIPSCKSNAVRDLTVGALAGGTAVWAATWKLSKPF 60
           MG+ALFDLEQ+LI+KR KL+ +EA ++ SCK+NA+++ TV +L  G A W  T +L K F
Sbjct: 1   MGEALFDLEQLLISKRAKLTPDEANILQSCKTNAIKNFTVFSLVSGAAAWTVTGRLGKAF 60

Query: 61  RINLSAGAGVFFGLWMLERSLYSCVDHILTLDGTILQKELANIMVTKYHDKPSVMQLISK 120
           ++NL+AGA  F GL +  RSLYS  DHIL+LDG+ LQKELANI+VTKY   PS+M+LISK
Sbjct: 61  QVNLTAGAAAFCGLRIFSRSLYSSADHILSLDGSTLQKELANILVTKYQHDPSLMKLISK 120

Query: 121 HFYSERLFDDSTSNTPKFRWRYRNFYSDNVVHGQTTHDPDSYDKSQGDSHNDSYEKSQGD 180
           HFYSERL+DDS SNTPK RWRYRNF+SDNV++G  T D DSY+KSQG+SHNDSY      
Sbjct: 121 HFYSERLYDDSASNTPKLRWRYRNFFSDNVINGNKTQDHDSYNKSQGNSHNDSYA----- 175

Query: 181 SLNDSSGKSKSKSENVTGSKKSNLETKQIFTKPGTDIMSEVDPLDCLFGYGGAPVEEIRG 240
             +DS  KS+ KSEN+T SK++   TKQ F  PG++++SEVDPLDCLFGY GAP+EE   
Sbjct: 176 --SDSLEKSQGKSENITDSKRTTRGTKQSFINPGSEVLSEVDPLDCLFGY-GAPMEENFH 232

Query: 241 PNTSNKQSGTXXXXXXXXXXXXXXXXXXDLSNSEQ 275
           PNT NK SGT                  DLSNSE 
Sbjct: 233 PNTPNKPSGTHHRGHRRHRRRHRMRDHDDLSNSEH 267