Miyakogusa Predicted Gene

Lj1g3v0084880.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0084880.1 Non Characterized Hit- tr|I3S562|I3S562_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,45,1e-18,seg,NULL; coiled-coil,NULL; Translational machinery
components,NULL; STRUCTURAL CONSTITUENT OF RIBOS,CUFF.25193.1
         (346 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g006310.1 | structural constituent of ribosome protein | H...   395   e-110
Medtr3g012540.1 | structural constituent of ribosome protein | H...   100   3e-21
Medtr4g032660.1 | 50S ribosomal protein L18 family protein | HC ...    79   6e-15

>Medtr5g006310.1 | structural constituent of ribosome protein | HC |
           chr5:854406-856255 | 20130731
          Length = 404

 Score =  395 bits (1014), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 205/341 (60%), Positives = 240/341 (70%), Gaps = 13/341 (3%)

Query: 1   MVSMLARKCASLHSQHSL--LRTLNLCFKSLSTTIPDNKDDXXXXXXXXXXXXXX-XXXL 57
           M+SM ARKC S+++Q  +  L   NLCFKSL TT+PD                      L
Sbjct: 2   MLSMFARKCTSVYNQRIVFKLSAFNLCFKSL-TTVPDKDGGAAVSSLAEQPSDYYPSSSL 60

Query: 58  HISPFFSQFNHPTSGFDIELVDRDAWGISSGVAQAWRA-----ASEASSADKQATSE--D 110
           H+SPFFS  NHP+SGFDIELVDRDAWG+SS VAQAWR      A  +SS D+    E  D
Sbjct: 61  HLSPFFSNSNHPSSGFDIELVDRDAWGVSSVVAQAWRGGDLATAGASSSCDQCVIDEPLD 120

Query: 111 QRQNEVEGELDFEELDNMRIRGNLFFKLERSSKEFEEYNLEFHXXXXXXXXXXXXXXXXX 170
              +++E ELDFEE+DN+R+RGNLF+KLERSS EFEEYN+EFH                 
Sbjct: 121 ACSSDLEDELDFEEIDNLRVRGNLFYKLERSSMEFEEYNIEFHKKKSSKKKNDKTEVTNK 180

Query: 171 XXXXXXXXXXXVTPKDQKVPKVRELTRSNSVIEPRMDETKDVSPLNKRQRNPTFNQLTGP 230
                       T KDQK+PKV E  R++  + PRMDE  D SP+NK+QR PTFNQLTGP
Sbjct: 181 AKAKDKTTPK-ATSKDQKLPKVDEFGRNSKSVIPRMDEINDSSPVNKKQRVPTFNQLTGP 239

Query: 231 YHEPFCLDIFISNASVRACIIHRVTSQVVAVAHSISKDIKFDLANSTKSKTTCAAVGAIL 290
           YHEPFCLDI+IS ASVRACI+HRVTS+VV VAHSISKD+KFDL  STK+KTTCAAVG IL
Sbjct: 240 YHEPFCLDIYISKASVRACIVHRVTSKVVVVAHSISKDLKFDL-TSTKNKTTCAAVGKIL 298

Query: 291 AQRALADDIHDVIYTPRKGNRVEGKLQIVLHSIMNNGINVK 331
           AQRALADDIHD+IYTPRKG RVEGKLQIVL+SI+++GINVK
Sbjct: 299 AQRALADDIHDIIYTPRKGERVEGKLQIVLNSIIDSGINVK 339


>Medtr3g012540.1 | structural constituent of ribosome protein | HC |
           chr3:3539643-3535836 | 20130731
          Length = 187

 Score =  100 bits (248), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/120 (45%), Positives = 77/120 (64%), Gaps = 5/120 (4%)

Query: 216 NKRQRNP----TFNQLTGPYHEPFCLDIFISNASVRACIIHRVTSQVVAVAHSISKDIKF 271
            K+ +NP    +F Q T  Y EPF LD+FIS   V A + HRVTS+ VAVA + SKDIK 
Sbjct: 65  GKKSKNPNKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKA 124

Query: 272 DLANSTKSKTTCAAVGAILAQRALADDIHDVIYTPRKGNRVEGKLQIVLHSIMNNGINVK 331
            L  S      C A+G ILA+RA+  D++   YTPR  ++ EGK++ V+ S+++NGI++K
Sbjct: 125 VL-RSRSDIPACIAIGRILAERAMEADVYTASYTPRDRDKFEGKIRAVVQSLIDNGIDLK 183


>Medtr4g032660.1 | 50S ribosomal protein L18 family protein | HC |
           chr4:11256027-11260142 | 20130731
          Length = 199

 Score = 79.0 bits (193), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 65/112 (58%), Gaps = 1/112 (0%)

Query: 217 KRQRNPTFNQLTGPYHEPFCLDIFISNASVRACIIHRVTSQVVAVAHSISKDIKFDLANS 276
           K+    ++ + T  Y  PF LDIF S   V A + HR TS+V+ VA + +KD++  L  S
Sbjct: 86  KKPSRKSWKRRTDMYMRPFLLDIFFSKKFVHAKVTHRGTSKVICVATTNAKDLRNSLP-S 144

Query: 277 TKSKTTCAAVGAILAQRALADDIHDVIYTPRKGNRVEGKLQIVLHSIMNNGI 328
                 C  +G ++A+R+   D++ + Y PRK  R+EG+L I++ ++  NGI
Sbjct: 145 LIDPEACRVIGRLIAERSKEADVYAMAYEPRKKERIEGRLGIIIDTVKENGI 196