Miyakogusa Predicted Gene
- Lj1g3v0052580.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v0052580.1 tr|Q54WL8|Q54WL8_DICDI ENTH domain-containing
protein OS=Dictyostelium discoideum GN=pcf11 PE=4
SV=2,34.44,4e-18,seg,NULL; no description,RNA polymerase II, large
subunit, CTD; CTD_bind,RNA polymerase II-binding d,CUFF.25202.1
(804 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr6g011450.1 | PCF11P-related protein | HC | chr6:3246456-325... 955 0.0
Medtr6g011450.2 | PCF11P-related protein | HC | chr6:3248562-325... 763 0.0
Medtr4g073340.1 | hypothetical protein | HC | chr4:27754923-2775... 477 e-134
Medtr6g011470.1 | PCF11P-related protein | HC | chr6:3262423-326... 254 2e-67
Medtr7g103840.1 | ENTH/VHS-like protein | HC | chr7:41991606-419... 194 3e-49
Medtr7g103840.2 | ENTH/VHS-like protein | HC | chr7:41991161-419... 194 3e-49
Medtr1g061130.3 | RNA polymerase II-binding domain protein | HC ... 190 5e-48
Medtr1g061130.1 | RNA polymerase II-binding domain protein | HC ... 190 5e-48
Medtr1g061130.2 | RNA polymerase II-binding domain protein | HC ... 190 5e-48
>Medtr6g011450.1 | PCF11P-related protein | HC |
chr6:3246456-3252804 | 20130731
Length = 840
Score = 955 bits (2468), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 517/845 (61%), Positives = 585/845 (69%), Gaps = 51/845 (6%)
Query: 3 SNDMMGQKLPPPTLVDRFKALLXXXXXX-----XXXXASEEIVQIYELLLSELTCNLKPI 57
SN+++ QK PP LV RFKALL ++EEIVQIYELLLSELTCN+KPI
Sbjct: 2 SNEIV-QKPPPSILVGRFKALLNQRREEDPRLRNSQPSTEEIVQIYELLLSELTCNVKPI 60
Query: 58 ITDLTIIAEQQREHAEGIADAICTRILEVHADQKLPSLYLLDSIVKNVGQEYVKYFSLRL 117
ITDLTIIAEQ R HA+GIA AIC RI+EV ADQKLPSLYLLDSIVKNVGQEYV+YFS RL
Sbjct: 61 ITDLTIIAEQHRNHAKGIAFAICNRIVEVSADQKLPSLYLLDSIVKNVGQEYVRYFSQRL 120
Query: 118 PEVFCEAYRQVQPHLHSAMRHLFGTWSKVFSAPVLRKIEAQLQFSRGVNNQPSNVNPLRT 177
PEVFC AYRQV P LHSAMRHLFGTWSKVF VLRKI+ +LQFS+ VNNQPS VN LR
Sbjct: 121 PEVFCVAYRQVDPSLHSAMRHLFGTWSKVFPPSVLRKIDVELQFSKPVNNQPSGVNSLRA 180
Query: 178 SESPRPTHGIHVNPKYV-------------GGERLDSTGTGGNTSFGLVANKIHQFXXXX 224
SESPRPTHGIHVNP+YV GERLDSTGT GN +FGL+A+KI+QF
Sbjct: 181 SESPRPTHGIHVNPRYVRQIEHSTSVIDSVAGERLDSTGTAGNANFGLLASKINQFVPSR 240
Query: 225 XXXXXXXXXXXXDMPLSTYADEYPADNSTGRTIERESPHHAVDYGVVKTLGREVELSEWQ 284
D + +Y DEY ADNSTGRT+ERESPHHAVDYG+VK LGRE E SEW
Sbjct: 241 VGRSSSPPRIGLDRHMPSYMDEYLADNSTGRTVERESPHHAVDYGLVKGLGREEESSEWS 300
Query: 285 RKQFSGEGPKRFQTSKTTYSLINGQQRQSPRALIDAFGGDK-------------RLGRNG 331
RK FSG+ KRFQTS TYSL NGQ RQ+PRALIDA+G DK RL RNG
Sbjct: 301 RKPFSGDSRKRFQTS-MTYSLSNGQPRQNPRALIDAYGSDKSQETSGSKPLLVERLDRNG 359
Query: 332 IDKVLTTSWQNTEEEEFNWGDMSPKLAEHNTNNGYLQSTTGFTTGKPVIVGANAISSEQD 391
+DKV+TTSWQNTEEEEF+W DMSP + +H +NG+LQ T GF++ KPV V ANA SS
Sbjct: 360 MDKVMTTSWQNTEEEEFDWEDMSPTVVDHGRSNGFLQPTIGFSSEKPVTVAANATSSVSR 419
Query: 392 TRKGWSSGSQL-PPVDDSSVIAEDAFTSSAYSGVSLGQVSGFQNPINQSQGSGQRIDA-W 449
G +S + PPV ++ + A S+ + +NP+ + + I+A
Sbjct: 420 VFPGLNSNIEYRPPVLPAAFETRHSVNVHAPRPPSITPIFPSKNPV---RNPFESINANS 476
Query: 450 KISSHPSVSTRHPFN------IENKDFNNGNLHQLPNQLAGLLSSNPQNRGQAPQLQFFP 503
I SH ++ P + +EN D N NL+QLPNQL GL+SSNP N Q P QFFP
Sbjct: 477 TIVSHGLINRPFPMHEQSLHGVENNDINKRNLYQLPNQLPGLISSNPPNSVQTPSFQFFP 536
Query: 504 SQDPAASQFS-GSSFPGHGAARNTHLSNAPPNMAFPLPGQNMVNNSFX----XXXXXXXX 558
QDPAASQF+ S PGHG A + L N P M PLPGQ + NNSF
Sbjct: 537 PQDPAASQFTYRPSLPGHGPAMSNPLPNVRPVMPLPLPGQRIGNNSFHFQGGALRPLPPP 596
Query: 559 XXXXXXXXXXXXXXXXXVSSQQPTVPYSNLINSLVAQGVFSWANPVPAQDSVGIEFNLDI 618
V +QQPTV YSNLINSL+AQGV S N P+QD VGIEF+ D
Sbjct: 597 GPHAPSQMPPHPNPSPFVPNQQPTVGYSNLINSLMAQGVISLTNQAPSQDFVGIEFDPDT 656
Query: 619 PKVHHESAISALYGDLPRQCRTCGLRFKCQDEHSNHMDWHVTKNRMSKNRKQKPSRKWFV 678
KV HESAISALYG+LPRQC TCGLRFK QDEHS+HMDWHVTKNRMSKNRKQKPSRKWFV
Sbjct: 657 LKVRHESAISALYGNLPRQCTTCGLRFKSQDEHSSHMDWHVTKNRMSKNRKQKPSRKWFV 716
Query: 679 SVRMWLSGAEALGTESAPGFLRTDTVXXXXXXXXLAVPADEDQNTCALCLEPFGKFYSDE 738
S MWLSGAEALGTESAPGFL T+T LAVPADEDQNTCALC EPF +FYSDE
Sbjct: 717 SETMWLSGAEALGTESAPGFLPTETTEEKKEDEELAVPADEDQNTCALCGEPFEEFYSDE 776
Query: 739 TEDWMYRGAVYLNAPNGTTAGLNRSQLGPIIHAKCRSESSVAPFNDFALDEGGTSEEGSK 798
TE+WMYRGAVYLNAPNG T G++RSQLG IIHAKCRSES+ P DF +DEGGT EEGS+
Sbjct: 777 TEEWMYRGAVYLNAPNGITTGMDRSQLGSIIHAKCRSEST--PCEDFVMDEGGTYEEGSQ 834
Query: 799 RKRMR 803
RKRMR
Sbjct: 835 RKRMR 839
>Medtr6g011450.2 | PCF11P-related protein | HC |
chr6:3248562-3252804 | 20130731
Length = 702
Score = 763 bits (1971), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/707 (58%), Positives = 476/707 (67%), Gaps = 45/707 (6%)
Query: 136 MRHLFGTWSKVFSAPVLRKIEAQLQFSRGVNNQPSNVNPLRTSESPRPTHGIHVNPKYV- 194
MRHLFGTWSKVF VLRKI+ +LQFS+ VNNQPS VN LR SESPRPTHGIHVNP+YV
Sbjct: 1 MRHLFGTWSKVFPPSVLRKIDVELQFSKPVNNQPSGVNSLRASESPRPTHGIHVNPRYVR 60
Query: 195 ------------GGERLDSTGTGGNTSFGLVANKIHQFXXXXXXXXXXXXXXXXDMPLST 242
GERLDSTGT GN +FGL+A+KI+QF D + +
Sbjct: 61 QIEHSTSVIDSVAGERLDSTGTAGNANFGLLASKINQFVPSRVGRSSSPPRIGLDRHMPS 120
Query: 243 YADEYPADNSTGRTIERESPHHAVDYGVVKTLGREVELSEWQRKQFSGEGPKRFQTSKTT 302
Y DEY ADNSTGRT+ERESPHHAVDYG+VK LGRE E SEW RK FSG+ KRFQTS T
Sbjct: 121 YMDEYLADNSTGRTVERESPHHAVDYGLVKGLGREEESSEWSRKPFSGDSRKRFQTS-MT 179
Query: 303 YSLINGQQRQSPRALIDAFGGDK-------------RLGRNGIDKVLTTSWQNTEEEEFN 349
YSL NGQ RQ+PRALIDA+G DK RL RNG+DKV+TTSWQNTEEEEF+
Sbjct: 180 YSLSNGQPRQNPRALIDAYGSDKSQETSGSKPLLVERLDRNGMDKVMTTSWQNTEEEEFD 239
Query: 350 WGDMSPKLAEHNTNNGYLQSTTGFTTGKPVIVGANAISSEQDTRKGWSSGSQL-PPVDDS 408
W DMSP + +H +NG+LQ T GF++ KPV V ANA SS G +S + PPV +
Sbjct: 240 WEDMSPTVVDHGRSNGFLQPTIGFSSEKPVTVAANATSSVSRVFPGLNSNIEYRPPVLPA 299
Query: 409 SVIAEDAFTSSAYSGVSLGQVSGFQNPINQSQGSGQRIDA-WKISSHPSVSTRHPFN--- 464
+ + A S+ + +NP+ + + I+A I SH ++ P +
Sbjct: 300 AFETRHSVNVHAPRPPSITPIFPSKNPV---RNPFESINANSTIVSHGLINRPFPMHEQS 356
Query: 465 ---IENKDFNNGNLHQLPNQLAGLLSSNPQNRGQAPQLQFFPSQDPAASQFS-GSSFPGH 520
+EN D N NL+QLPNQL GL+SSNP N Q P QFFP QDPAASQF+ S PGH
Sbjct: 357 LHGVENNDINKRNLYQLPNQLPGLISSNPPNSVQTPSFQFFPPQDPAASQFTYRPSLPGH 416
Query: 521 GAARNTHLSNAPPNMAFPLPGQNMVNNSFX----XXXXXXXXXXXXXXXXXXXXXXXXXV 576
G A + L N P M PLPGQ + NNSF V
Sbjct: 417 GPAMSNPLPNVRPVMPLPLPGQRIGNNSFHFQGGALRPLPPPGPHAPSQMPPHPNPSPFV 476
Query: 577 SSQQPTVPYSNLINSLVAQGVFSWANPVPAQDSVGIEFNLDIPKVHHESAISALYGDLPR 636
+QQPTV YSNLINSL+AQGV S N P+QD VGIEF+ D KV HESAISALYG+LPR
Sbjct: 477 PNQQPTVGYSNLINSLMAQGVISLTNQAPSQDFVGIEFDPDTLKVRHESAISALYGNLPR 536
Query: 637 QCRTCGLRFKCQDEHSNHMDWHVTKNRMSKNRKQKPSRKWFVSVRMWLSGAEALGTESAP 696
QC TCGLRFK QDEHS+HMDWHVTKNRMSKNRKQKPSRKWFVS MWLSGAEALGTESAP
Sbjct: 537 QCTTCGLRFKSQDEHSSHMDWHVTKNRMSKNRKQKPSRKWFVSETMWLSGAEALGTESAP 596
Query: 697 GFLRTDTVXXXXXXXXLAVPADEDQNTCALCLEPFGKFYSDETEDWMYRGAVYLNAPNGT 756
GFL T+T LAVPADEDQNTCALC EPF +FYSDETE+WMYRGAVYLNAPNG
Sbjct: 597 GFLPTETTEEKKEDEELAVPADEDQNTCALCGEPFEEFYSDETEEWMYRGAVYLNAPNGI 656
Query: 757 TAGLNRSQLGPIIHAKCRSESSVAPFNDFALDEGGTSEEGSKRKRMR 803
T G++RSQLG IIHAKCRSES+ P DF +DEGGT EEGS+RKRMR
Sbjct: 657 TTGMDRSQLGSIIHAKCRSEST--PCEDFVMDEGGTYEEGSQRKRMR 701
>Medtr4g073340.1 | hypothetical protein | HC |
chr4:27754923-27752645 | 20130731
Length = 521
Score = 477 bits (1228), Expect = e-134, Method: Compositional matrix adjust.
Identities = 279/510 (54%), Positives = 318/510 (62%), Gaps = 45/510 (8%)
Query: 309 QQRQSPRALIDAFGGDK-------------RLGRNGIDKVLTTSWQNTEEEEFNWGDMSP 355
Q RQ+PRALIDA+G DK RL +NG DKV+TTSWQNTEEEEF+W DMSP
Sbjct: 41 QPRQNPRALIDAYGSDKSQETSGSKPLLVERLDKNGKDKVMTTSWQNTEEEEFDWEDMSP 100
Query: 356 KLAEHNTNNGYLQSTTGFTTGKPVIVGANAISSEQDTRKGWSSGSQL-PPVDDSSVIAED 414
L + + +NG+LQ T GF++ KP IV A+A SS G +S + PPV ++
Sbjct: 101 TLEDRSRSNGFLQPTIGFSSEKPDIVAASATSSVSREFPGLNSNIEYGPPVLPATFEMRH 160
Query: 415 AFTSSAYSGVSLGQVSGFQNPINQSQGSGQRIDAWKISSHPSVSTRHPFNIENKDFNNGN 474
+ A S+ PI S KI P H +EN D + N
Sbjct: 161 SINVHAPHPPSI-------TPIFPS----------KILPFP----LHEHGVENNDISKRN 199
Query: 475 LHQLPNQLAGLLSSNPQNRGQAPQLQFFPSQDPAASQFS-GSSFPGHGAARNTHLSNAPP 533
LHQLPNQL G +SSNP N GQ P QFFPSQ+P ASQF+ +S PGHGAA +SN
Sbjct: 200 LHQLPNQLPGPISSNPHNSGQMPPFQFFPSQNPPASQFTYKTSLPGHGAA----ISNPSQ 255
Query: 534 NMAFPLPGQNMVNNSFXXXXXXXXXXXXXXXXXXXXXXXXXXVSSQQPTVPYSNLINSLV 593
N F +P + + VSSQQPTV YSNL SL+
Sbjct: 256 NAQFVMP---LPSFQGGALPPLPPAGPYTLLQIPPNPNPCPSVSSQQPTVGYSNLFGSLM 312
Query: 594 AQGVFSWANPVPAQDSVGIEFNLDIPKVHHESAISALYGDLPRQCRTCGLRFKCQDEHSN 653
AQGV S N PAQD VGIEF+ + KV HESAISALYGDLPRQC TCGLRFK QDEH +
Sbjct: 313 AQGVISLTNQAPAQDFVGIEFDPNTLKVRHESAISALYGDLPRQCTTCGLRFKSQDEHRS 372
Query: 654 HMDWHVTKNRMSKNRKQKPSRKWFVSVRMWLSGAEALGTESAPGFLRTDTVXXXXXXXXL 713
HMDWHVTKNRMSKNRKQKPSR WFVS MWLSGAEALG ESA FL T+T L
Sbjct: 373 HMDWHVTKNRMSKNRKQKPSRMWFVSETMWLSGAEALGAESALDFLLTETTEEKKEDEKL 432
Query: 714 AVPADEDQNTCALCLEPFGKFYSDETEDWMYRGAVYLNAPNGTTAGLNRSQLGPIIHAKC 773
AVP DEDQNTCALC EPF +FYSDETEDWMYRGAVYLN PNG T G+ SQL PIIHAKC
Sbjct: 433 AVPPDEDQNTCALCREPFEEFYSDETEDWMYRGAVYLNMPNGITTGMAMSQLCPIIHAKC 492
Query: 774 RSESSVAPFNDFALDEGGTSEEGSKRKRMR 803
RSES+ P F +DEGGT EEGS+RK M+
Sbjct: 493 RSEST--PSEVFVIDEGGTYEEGSQRKLMQ 520
>Medtr6g011470.1 | PCF11P-related protein | HC |
chr6:3262423-3263241 | 20130731
Length = 210
Score = 254 bits (649), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 129/200 (64%), Positives = 137/200 (68%), Gaps = 28/200 (14%)
Query: 576 VSSQQPTVPYSNLINSLVAQGVFSWANPVPAQDSVGIEFNLDIPKVHHESAISALYGDLP 635
VSSQQPTV YSNLI+SLVAQGV S AN PA P
Sbjct: 39 VSSQQPTVGYSNLISSLVAQGVISLANQAPA----------------------------P 70
Query: 636 RQCRTCGLRFKCQDEHSNHMDWHVTKNRMSKNRKQKPSRKWFVSVRMWLSGAEALGTESA 695
+C TCGLR K +DEHS+HMDWHVTKNRMSKN KQKPSR WFVS MWL GAE LG +SA
Sbjct: 71 AECTTCGLRLKSKDEHSSHMDWHVTKNRMSKNCKQKPSRMWFVSEMMWLKGAETLGVKSA 130
Query: 696 PGFLRTDTVXXXXXXXXLAVPADEDQNTCALCLEPFGKFYSDETEDWMYRGAVYLNAPNG 755
PGFL T+T LAVPADEDQNTCALC EP FYSDETEDWM R AVYLNAPNG
Sbjct: 131 PGFLPTETTEEKREDEDLAVPADEDQNTCALCGEPLDVFYSDETEDWMCRVAVYLNAPNG 190
Query: 756 TTAGLNRSQLGPIIHAKCRS 775
T G++ SQLGPIIHAKCRS
Sbjct: 191 ITTGMDMSQLGPIIHAKCRS 210
>Medtr7g103840.1 | ENTH/VHS-like protein | HC |
chr7:41991606-41997500 | 20130731
Length = 1029
Score = 194 bits (494), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 95/164 (57%), Positives = 120/164 (73%), Gaps = 1/164 (0%)
Query: 37 EEIVQIYELLLSELTCNLKPIITDLTIIAEQQREHAEGIADAICTRILEVHADQKLPSLY 96
+E+V Y+ L+ELT N KPIIT+LTIIA + A+ IA A+C ILEV +DQKLPSLY
Sbjct: 79 QELVTQYKAALAELTFNSKPIITNLTIIAGENLSAAKSIAGAVCGNILEVPSDQKLPSLY 138
Query: 97 LLDSIVKNVGQEYVKYFSLRLPEVFCEAYRQVQPHLHSAMRHLFGTWSKVFSAPVLRKIE 156
LLDSIVKN+G++Y+KYF++RLPEVFC YRQV +HS+MRHLFGTW VF L+ IE
Sbjct: 139 LLDSIVKNIGRDYIKYFAVRLPEVFCNTYRQVDTPVHSSMRHLFGTWRGVFPPQTLQIIE 198
Query: 157 AQLQFSRGVNNQPSNVNPLRT-SESPRPTHGIHVNPKYVGGERL 199
+L F+ VN S LR+ S+S RP+H IHVNPKY+ +RL
Sbjct: 199 KELNFNPAVNGSASASATLRSDSQSQRPSHSIHVNPKYLERQRL 242
Score = 120 bits (302), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 94/172 (54%), Gaps = 4/172 (2%)
Query: 610 VGIEFNLDIPKVHHESAISALYGDLPRQCRTCGLRFKCQDEHSNHMDWHVTKNRMSKNRK 669
+G +F D+ + H I L +LP C CG+R K Q++ + H++WH TK R +N
Sbjct: 848 IGFDFKPDVIREMHPHVIEELLDELPHHCGDCGIRLKQQEQFNRHLEWHATKER-EQNGL 906
Query: 670 QKPSRKWFVSVRMWL-SGAEALG-TESAPGFLRTDTVXXXXXXXXLAVPADEDQNTCALC 727
SR+W+V+ W+ S AE L +E D V ADE+Q C LC
Sbjct: 907 TVASRRWYVTSDDWIASKAECLSESEFTDSVDEYDDNKTDGSQLDTMVVADENQCLCVLC 966
Query: 728 LEPFGKFYSDETEDWMYRGAVYLNAPNGTTAGLNRSQLGPIIHAKCRSESSV 779
E F Y E ++WM++GAVYLN P+ + +R+ +GPIIHA+C S++S+
Sbjct: 967 GELFEDVYCQERDEWMFKGAVYLNNPDSDSEMESRN-VGPIIHARCLSDNSI 1017
>Medtr7g103840.2 | ENTH/VHS-like protein | HC |
chr7:41991161-41998262 | 20130731
Length = 1028
Score = 194 bits (493), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 95/164 (57%), Positives = 120/164 (73%), Gaps = 1/164 (0%)
Query: 37 EEIVQIYELLLSELTCNLKPIITDLTIIAEQQREHAEGIADAICTRILEVHADQKLPSLY 96
+E+V Y+ L+ELT N KPIIT+LTIIA + A+ IA A+C ILEV +DQKLPSLY
Sbjct: 81 QELVTQYKAALAELTFNSKPIITNLTIIAGENLSAAKSIAGAVCGNILEVPSDQKLPSLY 140
Query: 97 LLDSIVKNVGQEYVKYFSLRLPEVFCEAYRQVQPHLHSAMRHLFGTWSKVFSAPVLRKIE 156
LLDSIVKN+G++Y+KYF++RLPEVFC YRQV +HS+MRHLFGTW VF L+ IE
Sbjct: 141 LLDSIVKNIGRDYIKYFAVRLPEVFCNTYRQVDTPVHSSMRHLFGTWRGVFPPQTLQIIE 200
Query: 157 AQLQFSRGVNNQPSNVNPLRT-SESPRPTHGIHVNPKYVGGERL 199
+L F+ VN S LR+ S+S RP+H IHVNPKY+ +RL
Sbjct: 201 KELNFNPAVNGSASASATLRSDSQSQRPSHSIHVNPKYLERQRL 244
Score = 120 bits (302), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 94/172 (54%), Gaps = 4/172 (2%)
Query: 610 VGIEFNLDIPKVHHESAISALYGDLPRQCRTCGLRFKCQDEHSNHMDWHVTKNRMSKNRK 669
+G +F D+ + H I L +LP C CG+R K Q++ + H++WH TK R +N
Sbjct: 850 IGFDFKPDVIREMHPHVIEELLDELPHHCGDCGIRLKQQEQFNRHLEWHATKER-EQNGL 908
Query: 670 QKPSRKWFVSVRMWL-SGAEALG-TESAPGFLRTDTVXXXXXXXXLAVPADEDQNTCALC 727
SR+W+V+ W+ S AE L +E D V ADE+Q C LC
Sbjct: 909 TVASRRWYVTSDDWIASKAECLSESEFTDSVDEYDDNKTDGSQLDTMVVADENQCLCVLC 968
Query: 728 LEPFGKFYSDETEDWMYRGAVYLNAPNGTTAGLNRSQLGPIIHAKCRSESSV 779
E F Y E ++WM++GAVYLN P+ + +R+ +GPIIHA+C S++S+
Sbjct: 969 GELFEDVYCQERDEWMFKGAVYLNNPDSDSEMESRN-VGPIIHARCLSDNSI 1019
>Medtr1g061130.3 | RNA polymerase II-binding domain protein | HC |
chr1:26672968-26665965 | 20130731
Length = 1041
Score = 190 bits (483), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 125/349 (35%), Positives = 178/349 (51%), Gaps = 39/349 (11%)
Query: 37 EEIVQIYELLLSELTCNLKPIITDLTIIAEQQREHAEGIADAICTRILEVHADQKLPSLY 96
E++V Y+ L+ELT N KP+IT+LTIIA + + + IA IC ILEV ++QKLPSLY
Sbjct: 80 EDLVAQYKSALAELTFNSKPMITNLTIIAGENQAGQKAIAATICANILEVPSEQKLPSLY 139
Query: 97 LLDSIVKNVGQEYVKYFSLRLPEVFCEAYRQVQPHLHSAMRHLFGTWSKVFSAPVLRKIE 156
LLDSIVKN+GQ+Y+KYF+ +LPEVFC+AY+QV P + +M+HLFGTW VF L+ I+
Sbjct: 140 LLDSIVKNIGQDYIKYFAAKLPEVFCKAYKQVDPSVRQSMKHLFGTWKGVFPPQTLQIID 199
Query: 157 AQLQFSRGVNNQPSNVNPLRT-SESPRPTHGIHVNPKYVGGERLD----STGTGGNTSFG 211
+L F+ +N S LR+ S+S H IHVNPKY +RL + G G+ + G
Sbjct: 200 KELGFTPVINGSSSASTALRSDSQSKHSPHSIHVNPKYFERQRLQQSSRTKGVVGDMT-G 258
Query: 212 LVANKIHQFXXXXXXXXXXXXXXXXDMPLSTYADEYP--------ADNSTGRTIERESPH 263
+AN + D P DN G + R
Sbjct: 259 AIANSNDDHEMTDRDLGVARAWNNQRTHRDPFNDSVPEKSISASYEDNEHGSNLSRN--- 315
Query: 264 HAVDYGVVKTLGREVELSE--WQRKQFSG-----EGPKRFQTSKTTYSLINGQQRQSPRA 316
+ G+ +T GR +L K +G G + K ++S Q R
Sbjct: 316 --LGMGIGRTDGRVAKLGHRNLSSKAAAGVSGTISGQRNSVGLKHSFSNTEASMHQPIRN 373
Query: 317 LIDAFGGDKRLGRNGIDK-VLTTSWQNTEEEEFNWGDMSPKLAEHNTNN 364
+ GI + V+++SWQN+EEEE++W +M+ L H N
Sbjct: 374 IA------------GIQRNVISSSWQNSEEEEYSWDEMNTGLTGHGVRN 410
Score = 108 bits (271), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 87/175 (49%), Gaps = 6/175 (3%)
Query: 610 VGIEFNLDIPKVHHESAISALYGDLPRQCRTCGLRFKCQDEHSNHMDWHVTKNRMSKNRK 669
+G EF ++ + H S IS L+ D P C CGL+ K Q++ + H++WH T+ R
Sbjct: 841 IGFEFKPNVIRKLHPSVISGLFDDFPHHCSICGLKLKFQEQFNRHLEWHATRERECTGLI 900
Query: 670 QKPSRKWFVSVRMWLSG-AEALGTESAPGFLRTDTVXXXXXXXXLAVPADEDQNTCALCL 728
+ +W++ W++G AE L + V ADE+Q C LC
Sbjct: 901 T--ASRWYLKSSDWVAGKAECPSENEFTDSLDSQDSETDKDQEDAMVLADENQCLCVLCG 958
Query: 729 EPFGKFYSDETEDWMYRGAVYL-NAPNGTTAGLNR--SQLGPIIHAKCRSESSVA 780
E F Y E +WM++ AVY+ NA T G+N S GPIIH +C S+ S++
Sbjct: 959 ELFEDVYCHENSEWMFKAAVYMTNADIATEVGINDVISGRGPIIHTRCLSDYSLS 1013
>Medtr1g061130.1 | RNA polymerase II-binding domain protein | HC |
chr1:26672968-26665891 | 20130731
Length = 1021
Score = 190 bits (482), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 125/349 (35%), Positives = 178/349 (51%), Gaps = 39/349 (11%)
Query: 37 EEIVQIYELLLSELTCNLKPIITDLTIIAEQQREHAEGIADAICTRILEVHADQKLPSLY 96
E++V Y+ L+ELT N KP+IT+LTIIA + + + IA IC ILEV ++QKLPSLY
Sbjct: 80 EDLVAQYKSALAELTFNSKPMITNLTIIAGENQAGQKAIAATICANILEVPSEQKLPSLY 139
Query: 97 LLDSIVKNVGQEYVKYFSLRLPEVFCEAYRQVQPHLHSAMRHLFGTWSKVFSAPVLRKIE 156
LLDSIVKN+GQ+Y+KYF+ +LPEVFC+AY+QV P + +M+HLFGTW VF L+ I+
Sbjct: 140 LLDSIVKNIGQDYIKYFAAKLPEVFCKAYKQVDPSVRQSMKHLFGTWKGVFPPQTLQIID 199
Query: 157 AQLQFSRGVNNQPSNVNPLRT-SESPRPTHGIHVNPKYVGGERLD----STGTGGNTSFG 211
+L F+ +N S LR+ S+S H IHVNPKY +RL + G G+ + G
Sbjct: 200 KELGFTPVINGSSSASTALRSDSQSKHSPHSIHVNPKYFERQRLQQSSRTKGVVGDMT-G 258
Query: 212 LVANKIHQFXXXXXXXXXXXXXXXXDMPLSTYADEYP--------ADNSTGRTIERESPH 263
+AN + D P DN G + R
Sbjct: 259 AIANSNDDHEMTDRDLGVARAWNNQRTHRDPFNDSVPEKSISASYEDNEHGSNLSRN--- 315
Query: 264 HAVDYGVVKTLGREVELSE--WQRKQFSG-----EGPKRFQTSKTTYSLINGQQRQSPRA 316
+ G+ +T GR +L K +G G + K ++S Q R
Sbjct: 316 --LGMGIGRTDGRVAKLGHRNLSSKAAAGVSGTISGQRNSVGLKHSFSNTEASMHQPIRN 373
Query: 317 LIDAFGGDKRLGRNGIDK-VLTTSWQNTEEEEFNWGDMSPKLAEHNTNN 364
+ GI + V+++SWQN+EEEE++W +M+ L H N
Sbjct: 374 IA------------GIQRNVISSSWQNSEEEEYSWDEMNTGLTGHGVRN 410
Score = 110 bits (274), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 89/183 (48%), Gaps = 6/183 (3%)
Query: 610 VGIEFNLDIPKVHHESAISALYGDLPRQCRTCGLRFKCQDEHSNHMDWHVTKNRMSKNRK 669
+G EF ++ + H S IS L+ D P C CGL+ K Q++ + H++WH T+ R
Sbjct: 841 IGFEFKPNVIRKLHPSVISGLFDDFPHHCSICGLKLKFQEQFNRHLEWHATRERECTGLI 900
Query: 670 QKPSRKWFVSVRMWLSG-AEALGTESAPGFLRTDTVXXXXXXXXLAVPADEDQNTCALCL 728
+ +W++ W++G AE L + V ADE+Q C LC
Sbjct: 901 T--ASRWYLKSSDWVAGKAECPSENEFTDSLDSQDSETDKDQEDAMVLADENQCLCVLCG 958
Query: 729 EPFGKFYSDETEDWMYRGAVYL-NAPNGTTAGLNR--SQLGPIIHAKCRSESSVAPFNDF 785
E F Y E +WM++ AVY+ NA T G+N S GPIIH +C S+ S++
Sbjct: 959 ELFEDVYCHENSEWMFKAAVYMTNADIATEVGINDVISGRGPIIHTRCLSDYSLSSVVKT 1018
Query: 786 ALD 788
LD
Sbjct: 1019 ELD 1021
>Medtr1g061130.2 | RNA polymerase II-binding domain protein | HC |
chr1:26672968-26665891 | 20130731
Length = 1021
Score = 190 bits (482), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 125/349 (35%), Positives = 178/349 (51%), Gaps = 39/349 (11%)
Query: 37 EEIVQIYELLLSELTCNLKPIITDLTIIAEQQREHAEGIADAICTRILEVHADQKLPSLY 96
E++V Y+ L+ELT N KP+IT+LTIIA + + + IA IC ILEV ++QKLPSLY
Sbjct: 80 EDLVAQYKSALAELTFNSKPMITNLTIIAGENQAGQKAIAATICANILEVPSEQKLPSLY 139
Query: 97 LLDSIVKNVGQEYVKYFSLRLPEVFCEAYRQVQPHLHSAMRHLFGTWSKVFSAPVLRKIE 156
LLDSIVKN+GQ+Y+KYF+ +LPEVFC+AY+QV P + +M+HLFGTW VF L+ I+
Sbjct: 140 LLDSIVKNIGQDYIKYFAAKLPEVFCKAYKQVDPSVRQSMKHLFGTWKGVFPPQTLQIID 199
Query: 157 AQLQFSRGVNNQPSNVNPLRT-SESPRPTHGIHVNPKYVGGERLD----STGTGGNTSFG 211
+L F+ +N S LR+ S+S H IHVNPKY +RL + G G+ + G
Sbjct: 200 KELGFTPVINGSSSASTALRSDSQSKHSPHSIHVNPKYFERQRLQQSSRTKGVVGDMT-G 258
Query: 212 LVANKIHQFXXXXXXXXXXXXXXXXDMPLSTYADEYP--------ADNSTGRTIERESPH 263
+AN + D P DN G + R
Sbjct: 259 AIANSNDDHEMTDRDLGVARAWNNQRTHRDPFNDSVPEKSISASYEDNEHGSNLSRN--- 315
Query: 264 HAVDYGVVKTLGREVELSE--WQRKQFSG-----EGPKRFQTSKTTYSLINGQQRQSPRA 316
+ G+ +T GR +L K +G G + K ++S Q R
Sbjct: 316 --LGMGIGRTDGRVAKLGHRNLSSKAAAGVSGTISGQRNSVGLKHSFSNTEASMHQPIRN 373
Query: 317 LIDAFGGDKRLGRNGIDK-VLTTSWQNTEEEEFNWGDMSPKLAEHNTNN 364
+ GI + V+++SWQN+EEEE++W +M+ L H N
Sbjct: 374 IA------------GIQRNVISSSWQNSEEEEYSWDEMNTGLTGHGVRN 410
Score = 110 bits (274), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 89/183 (48%), Gaps = 6/183 (3%)
Query: 610 VGIEFNLDIPKVHHESAISALYGDLPRQCRTCGLRFKCQDEHSNHMDWHVTKNRMSKNRK 669
+G EF ++ + H S IS L+ D P C CGL+ K Q++ + H++WH T+ R
Sbjct: 841 IGFEFKPNVIRKLHPSVISGLFDDFPHHCSICGLKLKFQEQFNRHLEWHATRERECTGLI 900
Query: 670 QKPSRKWFVSVRMWLSG-AEALGTESAPGFLRTDTVXXXXXXXXLAVPADEDQNTCALCL 728
+ +W++ W++G AE L + V ADE+Q C LC
Sbjct: 901 T--ASRWYLKSSDWVAGKAECPSENEFTDSLDSQDSETDKDQEDAMVLADENQCLCVLCG 958
Query: 729 EPFGKFYSDETEDWMYRGAVYL-NAPNGTTAGLNR--SQLGPIIHAKCRSESSVAPFNDF 785
E F Y E +WM++ AVY+ NA T G+N S GPIIH +C S+ S++
Sbjct: 959 ELFEDVYCHENSEWMFKAAVYMTNADIATEVGINDVISGRGPIIHTRCLSDYSLSSVVKT 1018
Query: 786 ALD 788
LD
Sbjct: 1019 ELD 1021