Miyakogusa Predicted Gene
- Lj1g3v0052100.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v0052100.1 Non Characterized Hit- tr|I1LFQ0|I1LFQ0_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.20225
PE,84.89,0,UMUC,DNA-repair protein, UmuC-like, N-terminal;
IMS,DNA-repair protein, UmuC-like; no description,NU,CUFF.25137.1
(250 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr5g005030.1 | DNA polymerase kappa protein | HC | chr5:31433... 398 e-111
Medtr5g004960.2 | DNA repair protein REV1 | HC | chr5:222979-208... 86 2e-17
Medtr5g004960.3 | DNA repair protein REV1 | HC | chr5:222979-208... 86 3e-17
Medtr5g004960.1 | DNA repair protein REV1 | HC | chr5:222976-208... 86 3e-17
Medtr4g094755.1 | translesion synthesis DNA polymerase | HC | ch... 65 4e-11
Medtr4g094755.2 | translesion synthesis DNA polymerase | HC | ch... 65 6e-11
>Medtr5g005030.1 | DNA polymerase kappa protein | HC |
chr5:314338-309878 | 20130731
Length = 678
Score = 398 bits (1023), Expect = e-111, Method: Compositional matrix adjust.
Identities = 186/224 (83%), Positives = 204/224 (91%)
Query: 27 GDRPHPWQSYHTVYTIAKAGMEGVDKEKVQRTVYEMSKGSKYFQNEERKEAFINHKIHNF 86
G + WQSY+TVYT AKAGMEGVDKEKVQR VYEMSKGSKYFQNEERKE+FI +K+ N
Sbjct: 5 GSDDNRWQSYNTVYTSAKAGMEGVDKEKVQRIVYEMSKGSKYFQNEERKESFIKYKVQNM 64
Query: 87 RLNCAKLTPQDLSHYRKVADRRILELEASRDLSRIWLHVDMDAFYAAVETLSNPTLKGKP 146
RL+ + LT DLSHY+K+AD+RILELEASRDLSRIWLHVDMDAFYAAVETLSNP LKG P
Sbjct: 65 RLHFSNLTHSDLSHYQKIADKRILELEASRDLSRIWLHVDMDAFYAAVETLSNPMLKGMP 124
Query: 147 MAVGTISMISTANYEARKFGVRSAMPGFIARKLCPQLIFVPTDFNKYTHYSDLTRKVFRR 206
MAVG++SMISTANYEARKFGVRSAMPGFIARKLCP+LIFVP DF KYTHYSDLTRKVF+R
Sbjct: 125 MAVGSMSMISTANYEARKFGVRSAMPGFIARKLCPELIFVPVDFKKYTHYSDLTRKVFQR 184
Query: 207 YDPNFIAGSLDEAYLDITQVCKERNVKSEQIAQELRASVYEETG 250
YDPNFIAGSLDEAYLDIT+VC+ERNVKSE+IAQE+R V EETG
Sbjct: 185 YDPNFIAGSLDEAYLDITEVCRERNVKSEEIAQEIRVGVLEETG 228
>Medtr5g004960.2 | DNA repair protein REV1 | HC | chr5:222979-208226
| 20130731
Length = 1107
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 73/137 (53%), Gaps = 11/137 (8%)
Query: 121 IWLHVDMDAFYAAVETLSNPTLKGKPMAV-------GTISMISTANYEARKFGVRSAMPG 173
+ +HVDMD F+ +V S+P L KP+AV GT + IS+ANY AR +G+++ M
Sbjct: 370 VVIHVDMDCFFVSVVIRSHPELLDKPVAVCHSNNSKGT-AEISSANYPARSYGIKAGMFV 428
Query: 174 FIARKLCPQLIFVPTDFNKYTHYSDLTRKVFRRYDPNFIAGSLDEAYLDITQVCKERNVK 233
A+ LCP L+ P +F Y +D R+ A S DEA+LD+T E
Sbjct: 429 RDAKALCPHLVIFPYNFEAYEEVADQFYSTLHRHCNKVQAVSCDEAFLDVTHSKVE---D 485
Query: 234 SEQIAQELRASVYEETG 250
E +A +R +YE TG
Sbjct: 486 PELLASSIRKEIYETTG 502
>Medtr5g004960.3 | DNA repair protein REV1 | HC | chr5:222979-208176
| 20130731
Length = 1105
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 73/137 (53%), Gaps = 11/137 (8%)
Query: 121 IWLHVDMDAFYAAVETLSNPTLKGKPMAV-------GTISMISTANYEARKFGVRSAMPG 173
+ +HVDMD F+ +V S+P L KP+AV GT + IS+ANY AR +G+++ M
Sbjct: 370 VVIHVDMDCFFVSVVIRSHPELLDKPVAVCHSNNSKGT-AEISSANYPARSYGIKAGMFV 428
Query: 174 FIARKLCPQLIFVPTDFNKYTHYSDLTRKVFRRYDPNFIAGSLDEAYLDITQVCKERNVK 233
A+ LCP L+ P +F Y +D R+ A S DEA+LD+T E
Sbjct: 429 RDAKALCPHLVIFPYNFEAYEEVADQFYSTLHRHCNKVQAVSCDEAFLDVTHSKVE---D 485
Query: 234 SEQIAQELRASVYEETG 250
E +A +R +YE TG
Sbjct: 486 PELLASSIRKEIYETTG 502
>Medtr5g004960.1 | DNA repair protein REV1 | HC | chr5:222976-208901
| 20130731
Length = 1202
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 73/137 (53%), Gaps = 11/137 (8%)
Query: 121 IWLHVDMDAFYAAVETLSNPTLKGKPMAV-------GTISMISTANYEARKFGVRSAMPG 173
+ +HVDMD F+ +V S+P L KP+AV GT + IS+ANY AR +G+++ M
Sbjct: 370 VVIHVDMDCFFVSVVIRSHPELLDKPVAVCHSNNSKGT-AEISSANYPARSYGIKAGMFV 428
Query: 174 FIARKLCPQLIFVPTDFNKYTHYSDLTRKVFRRYDPNFIAGSLDEAYLDITQVCKERNVK 233
A+ LCP L+ P +F Y +D R+ A S DEA+LD+T E
Sbjct: 429 RDAKALCPHLVIFPYNFEAYEEVADQFYSTLHRHCNKVQAVSCDEAFLDVTHSKVE---D 485
Query: 234 SEQIAQELRASVYEETG 250
E +A +R +YE TG
Sbjct: 486 PELLASSIRKEIYETTG 502
>Medtr4g094755.1 | translesion synthesis DNA polymerase | HC |
chr4:38902552-38914057 | 20130731
Length = 690
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 60/120 (50%), Gaps = 19/120 (15%)
Query: 120 RIWLHVDMDAFYAAVETLSNPTLKGKPMAV--------GTISMISTANYEARKFGVRSAM 171
R+ HVDMD FY VE P+L+G P AV G + +S YEARK GV+ +M
Sbjct: 12 RVIAHVDMDCFYVQVEQRKQPSLRGLPTAVVQYNSYKGGGLIAVS---YEARKSGVKRSM 68
Query: 172 PGFIARKLCP--QLIFVPT-----DFNKYTHYSDLTRKVFRRYDPNFIAGSLDEAYLDIT 224
G A++ CP QL+ VP + N Y + + R A S+DE YLD+T
Sbjct: 69 RGDEAKEACPQIQLVQVPVARGKANLNTYRNAGSEVVSILSRKGRCERA-SIDEVYLDLT 127
>Medtr4g094755.2 | translesion synthesis DNA polymerase | HC |
chr4:38902552-38908977 | 20130731
Length = 565
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 60/120 (50%), Gaps = 19/120 (15%)
Query: 120 RIWLHVDMDAFYAAVETLSNPTLKGKPMAV--------GTISMISTANYEARKFGVRSAM 171
R+ HVDMD FY VE P+L+G P AV G + +S YEARK GV+ +M
Sbjct: 12 RVIAHVDMDCFYVQVEQRKQPSLRGLPTAVVQYNSYKGGGLIAVS---YEARKSGVKRSM 68
Query: 172 PGFIARKLCP--QLIFVPT-----DFNKYTHYSDLTRKVFRRYDPNFIAGSLDEAYLDIT 224
G A++ CP QL+ VP + N Y + + R A S+DE YLD+T
Sbjct: 69 RGDEAKEACPQIQLVQVPVARGKANLNTYRNAGSEVVSILSRKGRCERA-SIDEVYLDLT 127