Miyakogusa Predicted Gene

Lj1g3v0052050.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0052050.1 Non Characterized Hit- tr|Q01DM7|Q01DM7_OSTTA
Putative aminoacyl-t-RNA synthetase (ISS) (Fragment)
O,41.89,4e-19,TRNASYNTHGB,Glycine-tRNA ligase, beta subunit;
tRNA_synt_2f,Glycine-tRNA ligase, beta subunit; SUBFA,CUFF.25130.1
         (155 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g006955.3 | glycyl-tRNA synthetase alpha chain/beta chain ...   273   6e-74
Medtr8g006955.1 | glycyl-tRNA synthetase alpha chain/beta chain ...   272   7e-74
Medtr8g006955.2 | glycyl-tRNA synthetase alpha chain/beta chain ...   272   9e-74

>Medtr8g006955.3 | glycyl-tRNA synthetase alpha chain/beta chain |
           HC | chr8:1116498-1133360 | 20130731
          Length = 949

 Score =  273 bits (697), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 131/155 (84%), Positives = 144/155 (92%)

Query: 1   MRSLARQCAQLWLKTREMLGFPLGLISEPDQIVLPKEVLEAACEKVHDHSRAFVLEIGTE 60
           MRSLARQCAQLWLKTRE LGFPLGLISEPDQ V+PK+VLEAA EKVHD+ R FVLEIGTE
Sbjct: 214 MRSLARQCAQLWLKTRETLGFPLGLISEPDQSVIPKDVLEAAREKVHDNERTFVLEIGTE 273

Query: 61  ELPPHDVVDASKQLKDLMLQLLEQQRLKHGEVQVFGTPRRLVVAVENLFTKQTEKEVEIR 120
           E+PP DVVDASKQLKDL+LQLLE+QRLKHGEVQVF T RRLVV+VENLFTKQTE+EVE+R
Sbjct: 274 EMPPQDVVDASKQLKDLILQLLERQRLKHGEVQVFFTARRLVVSVENLFTKQTEQEVEVR 333

Query: 121 GPPVSKAFDHEGNPTKAIEGFSRRYSVPLDLVYRK 155
           GPPVSKAFD +GNPTKA EGFSR+ SVPL+L+YRK
Sbjct: 334 GPPVSKAFDSDGNPTKAAEGFSRKNSVPLNLIYRK 368


>Medtr8g006955.1 | glycyl-tRNA synthetase alpha chain/beta chain |
           HC | chr8:1116488-1133360 | 20130731
          Length = 1079

 Score =  272 bits (696), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 131/155 (84%), Positives = 144/155 (92%)

Query: 1   MRSLARQCAQLWLKTREMLGFPLGLISEPDQIVLPKEVLEAACEKVHDHSRAFVLEIGTE 60
           MRSLARQCAQLWLKTRE LGFPLGLISEPDQ V+PK+VLEAA EKVHD+ R FVLEIGTE
Sbjct: 344 MRSLARQCAQLWLKTRETLGFPLGLISEPDQSVIPKDVLEAAREKVHDNERTFVLEIGTE 403

Query: 61  ELPPHDVVDASKQLKDLMLQLLEQQRLKHGEVQVFGTPRRLVVAVENLFTKQTEKEVEIR 120
           E+PP DVVDASKQLKDL+LQLLE+QRLKHGEVQVF T RRLVV+VENLFTKQTE+EVE+R
Sbjct: 404 EMPPQDVVDASKQLKDLILQLLERQRLKHGEVQVFFTARRLVVSVENLFTKQTEQEVEVR 463

Query: 121 GPPVSKAFDHEGNPTKAIEGFSRRYSVPLDLVYRK 155
           GPPVSKAFD +GNPTKA EGFSR+ SVPL+L+YRK
Sbjct: 464 GPPVSKAFDSDGNPTKAAEGFSRKNSVPLNLIYRK 498


>Medtr8g006955.2 | glycyl-tRNA synthetase alpha chain/beta chain |
           HC | chr8:1116527-1131655 | 20130731
          Length = 968

 Score =  272 bits (696), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 131/155 (84%), Positives = 144/155 (92%)

Query: 1   MRSLARQCAQLWLKTREMLGFPLGLISEPDQIVLPKEVLEAACEKVHDHSRAFVLEIGTE 60
           MRSLARQCAQLWLKTRE LGFPLGLISEPDQ V+PK+VLEAA EKVHD+ R FVLEIGTE
Sbjct: 344 MRSLARQCAQLWLKTRETLGFPLGLISEPDQSVIPKDVLEAAREKVHDNERTFVLEIGTE 403

Query: 61  ELPPHDVVDASKQLKDLMLQLLEQQRLKHGEVQVFGTPRRLVVAVENLFTKQTEKEVEIR 120
           E+PP DVVDASKQLKDL+LQLLE+QRLKHGEVQVF T RRLVV+VENLFTKQTE+EVE+R
Sbjct: 404 EMPPQDVVDASKQLKDLILQLLERQRLKHGEVQVFFTARRLVVSVENLFTKQTEQEVEVR 463

Query: 121 GPPVSKAFDHEGNPTKAIEGFSRRYSVPLDLVYRK 155
           GPPVSKAFD +GNPTKA EGFSR+ SVPL+L+YRK
Sbjct: 464 GPPVSKAFDSDGNPTKAAEGFSRKNSVPLNLIYRK 498