Miyakogusa Predicted Gene

Lj1g3v0051020.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0051020.1 Non Characterized Hit- tr|G4LW35|G4LW35_SCHMA
Histone deacetylase,putative OS=Schistosoma mansoni
GN,44.23,5e-19,Ubiquitin Carboxyl-terminal Hydrolase-like z,Zinc
finger, UBP-type; seg,NULL; ZF_UBP,Zinc finger, UB,CUFF.25127.1
         (149 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g005150.2 | histone deacetylase | HC | chr5:261031-256169 ...   209   9e-55
Medtr5g005150.4 | histone deacetylase | HC | chr5:261031-257489 ...   209   9e-55
Medtr5g005150.1 | histone deacetylase | HC | chr5:261031-257337 ...   209   9e-55
Medtr5g005150.3 | histone deacetylase | HC | chr5:261031-258055 ...   141   3e-34

>Medtr5g005150.2 | histone deacetylase | HC | chr5:261031-256169 |
           20130731
          Length = 140

 Score =  209 bits (532), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 98/124 (79%), Positives = 110/124 (88%), Gaps = 4/124 (3%)

Query: 16  EADY----GSESGWVDARTCCDHLASLSLDLTHIPIPNTPCNRCQHPTENWLCLSCKDVL 71
           E DY    GS+SGWVDART C HL SLS DLTHIP P+TPCNRCQHP+ENWLCLSCKDVL
Sbjct: 14  EEDYDLIHGSQSGWVDARTSCHHLHSLSNDLTHIPTPDTPCNRCQHPSENWLCLSCKDVL 73

Query: 72  CSRFVNKHMLHHFQDTNHSVALSFSDLSVWCFSCDAYLDAQLIAQLRPVYQLAYLLKFGE 131
           C RFVN+HML HF++TNHSVALSFSDLSVWCFSCDAYLDAQ+I QLRPV+++AY+LKF E
Sbjct: 74  CGRFVNRHMLQHFRETNHSVALSFSDLSVWCFSCDAYLDAQVIQQLRPVHEVAYILKFDE 133

Query: 132 PPPL 135
           PPP+
Sbjct: 134 PPPV 137


>Medtr5g005150.4 | histone deacetylase | HC | chr5:261031-257489 |
           20130731
          Length = 140

 Score =  209 bits (532), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 98/124 (79%), Positives = 110/124 (88%), Gaps = 4/124 (3%)

Query: 16  EADY----GSESGWVDARTCCDHLASLSLDLTHIPIPNTPCNRCQHPTENWLCLSCKDVL 71
           E DY    GS+SGWVDART C HL SLS DLTHIP P+TPCNRCQHP+ENWLCLSCKDVL
Sbjct: 14  EEDYDLIHGSQSGWVDARTSCHHLHSLSNDLTHIPTPDTPCNRCQHPSENWLCLSCKDVL 73

Query: 72  CSRFVNKHMLHHFQDTNHSVALSFSDLSVWCFSCDAYLDAQLIAQLRPVYQLAYLLKFGE 131
           C RFVN+HML HF++TNHSVALSFSDLSVWCFSCDAYLDAQ+I QLRPV+++AY+LKF E
Sbjct: 74  CGRFVNRHMLQHFRETNHSVALSFSDLSVWCFSCDAYLDAQVIQQLRPVHEVAYILKFDE 133

Query: 132 PPPL 135
           PPP+
Sbjct: 134 PPPV 137


>Medtr5g005150.1 | histone deacetylase | HC | chr5:261031-257337 |
           20130731
          Length = 140

 Score =  209 bits (532), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 98/124 (79%), Positives = 110/124 (88%), Gaps = 4/124 (3%)

Query: 16  EADY----GSESGWVDARTCCDHLASLSLDLTHIPIPNTPCNRCQHPTENWLCLSCKDVL 71
           E DY    GS+SGWVDART C HL SLS DLTHIP P+TPCNRCQHP+ENWLCLSCKDVL
Sbjct: 14  EEDYDLIHGSQSGWVDARTSCHHLHSLSNDLTHIPTPDTPCNRCQHPSENWLCLSCKDVL 73

Query: 72  CSRFVNKHMLHHFQDTNHSVALSFSDLSVWCFSCDAYLDAQLIAQLRPVYQLAYLLKFGE 131
           C RFVN+HML HF++TNHSVALSFSDLSVWCFSCDAYLDAQ+I QLRPV+++AY+LKF E
Sbjct: 74  CGRFVNRHMLQHFRETNHSVALSFSDLSVWCFSCDAYLDAQVIQQLRPVHEVAYILKFDE 133

Query: 132 PPPL 135
           PPP+
Sbjct: 134 PPPV 137


>Medtr5g005150.3 | histone deacetylase | HC | chr5:261031-258055 |
          20130731
          Length = 103

 Score =  141 bits (355), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 67/85 (78%), Positives = 73/85 (85%), Gaps = 4/85 (4%)

Query: 16 EADY----GSESGWVDARTCCDHLASLSLDLTHIPIPNTPCNRCQHPTENWLCLSCKDVL 71
          E DY    GS+SGWVDART C HL SLS DLTHIP P+TPCNRCQHP+ENWLCLSCKDVL
Sbjct: 14 EEDYDLIHGSQSGWVDARTSCHHLHSLSNDLTHIPTPDTPCNRCQHPSENWLCLSCKDVL 73

Query: 72 CSRFVNKHMLHHFQDTNHSVALSFS 96
          C RFVN+HML HF++TNHSVALSFS
Sbjct: 74 CGRFVNRHMLQHFRETNHSVALSFS 98