Miyakogusa Predicted Gene

Lj1g3v0050930.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0050930.1 Non Characterized Hit- tr|J3LT23|J3LT23_ORYBR
Uncharacterized protein (Fragment) OS=Oryza brachyanth,56.96,3e-19,no
description,NULL; SWIB/MDM2 domain,SWIB/MDM2 domain; SWIB,SWIB/MDM2
domain; SWI complex, BAF60b d,CUFF.25123.1
         (132 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g005200.1 | SWIB/MDM2 domain protein | HC | chr5:242485-24...   164   2e-41
Medtr5g025500.1 | SWIB/MDM2 domain protein | HC | chr5:10358957-...    95   2e-20
Medtr5g018010.1 | upstream activation factor subunit UAF30, puta...    76   1e-14
Medtr5g018010.3 | upstream activation factor subunit UAF30, puta...    75   2e-14
Medtr5g018010.2 | upstream activation factor subunit UAF30, puta...    75   2e-14
Medtr3g055330.2 | SWIB/MDM2 domain protein | HC | chr3:21756054-...    72   1e-13
Medtr3g055330.1 | SWIB/MDM2 domain protein | HC | chr3:21756054-...    72   2e-13
Medtr3g053350.1 | PPR containing plant-like protein | HC | chr3:...    67   7e-12
Medtr3g053350.2 | PPR containing plant-like protein | HC | chr3:...    67   7e-12
Medtr6g023835.1 | chromatin remodeling complex subunit | HC | ch...    53   9e-08
Medtr6g023835.2 | chromatin remodeling complex subunit | HC | ch...    53   9e-08
Medtr6g023835.3 | chromatin remodeling complex subunit | HC | ch...    53   9e-08
Medtr5g021500.1 | zinc finger CCCH domain protein | HC | chr5:83...    52   2e-07

>Medtr5g005200.1 | SWIB/MDM2 domain protein | HC |
           chr5:242485-244145 | 20130731
          Length = 143

 Score =  164 bits (416), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 82/104 (78%), Positives = 90/104 (86%), Gaps = 1/104 (0%)

Query: 29  TLRMV-RPVVTSATVSQPSAAGNKIRGIMKPRKISPEMQSICGVPEISRTQALKHIWAYI 87
           TLRM    +VTSATVSQP   G KIRGIMKP+KISPEMQ + G PEISRTQALK IWA+I
Sbjct: 39  TLRMAPLRIVTSATVSQPPPTGGKIRGIMKPKKISPEMQDLVGQPEISRTQALKSIWAHI 98

Query: 88  KENNLQDPENKKLIRCDEKLKKVFAGKDEVGMLEIAGLISPHFL 131
           KE+NLQ+PE K+LIRCDEKLKKVFAG+DEV MLEIAGLISPHFL
Sbjct: 99  KEHNLQNPEKKRLIRCDEKLKKVFAGRDEVDMLEIAGLISPHFL 142


>Medtr5g025500.1 | SWIB/MDM2 domain protein | HC |
           chr5:10358957-10357050 | 20130731
          Length = 134

 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 45/101 (44%), Positives = 64/101 (63%), Gaps = 5/101 (4%)

Query: 32  MVRPVVTSATVSQPSAAGNKIRGIMKPRKISPEMQSICGVPEISRTQALKHIWAYIKENN 91
           +V+      TV+  S  G     I K  +++ E+ +  G PE+SRT+A+K +W YIK  N
Sbjct: 37  VVKKTAVKKTVTSKSTGG-----IQKVVQVTSELGNFIGAPEVSRTEAVKKVWEYIKLQN 91

Query: 92  LQDPENKKLIRCDEKLKKVFAGKDEVGMLEIAGLISPHFLK 132
           LQ+P NKK I CD+KLK +F GKD+V   EIA L++ HF+K
Sbjct: 92  LQNPNNKKEIFCDDKLKTIFDGKDKVVFTEIAKLLATHFVK 132


>Medtr5g018010.1 | upstream activation factor subunit UAF30,
           putative | HC | chr5:6695520-6691091 | 20130731
          Length = 344

 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 1/80 (1%)

Query: 53  RGIMKPRKISPEMQSICGVPEISRTQALKHIWAYIKENNLQDPENKKLIRCDEKLKKVFA 112
           +G + P ++S  +    G  E+SR+  +K +W YIK NNLQDP +K+ I CDEKLK++F 
Sbjct: 263 KGFLAPLQLSDALAKFLGESELSRSDVIKRMWDYIKGNNLQDPSDKRQILCDEKLKELFD 322

Query: 113 GKDEVGMLEIAGLISPHFLK 132
               VG   +  L++PHF+K
Sbjct: 323 VDSFVGFT-VTKLLAPHFIK 341



 Score = 72.8 bits (177), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 49/69 (71%), Gaps = 1/69 (1%)

Query: 61  ISPEMQSICGVPEISRTQALKHIWAYIKENNLQDPENKKLIRCDEKLKKVFAGKDEVGML 120
           +SP++Q   G PE++RT+ +K +WAYI+E +LQDP N++ I CDE L+ +F G D + M 
Sbjct: 138 LSPQLQEFVGAPEMARTEVVKQLWAYIREKDLQDPNNRRNIICDEPLRALF-GVDTINMF 196

Query: 121 EIAGLISPH 129
           ++  +++ H
Sbjct: 197 QMNKVLAKH 205


>Medtr5g018010.3 | upstream activation factor subunit UAF30,
           putative | HC | chr5:6695520-6691109 | 20130731
          Length = 267

 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 1/80 (1%)

Query: 53  RGIMKPRKISPEMQSICGVPEISRTQALKHIWAYIKENNLQDPENKKLIRCDEKLKKVFA 112
           +G + P ++S  +    G  E+SR+  +K +W YIK NNLQDP +K+ I CDEKLK++F 
Sbjct: 186 KGFLAPLQLSDALAKFLGESELSRSDVIKRMWDYIKGNNLQDPSDKRQILCDEKLKELFD 245

Query: 113 GKDEVGMLEIAGLISPHFLK 132
               VG   +  L++PHF+K
Sbjct: 246 VDSFVG-FTVTKLLAPHFIK 264



 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 49/69 (71%), Gaps = 1/69 (1%)

Query: 61  ISPEMQSICGVPEISRTQALKHIWAYIKENNLQDPENKKLIRCDEKLKKVFAGKDEVGML 120
           +SP++Q   G PE++RT+ +K +WAYI+E +LQDP N++ I CDE L+ +F G D + M 
Sbjct: 61  LSPQLQEFVGAPEMARTEVVKQLWAYIREKDLQDPNNRRNIICDEPLRALF-GVDTINMF 119

Query: 121 EIAGLISPH 129
           ++  +++ H
Sbjct: 120 QMNKVLAKH 128


>Medtr5g018010.2 | upstream activation factor subunit UAF30,
           putative | HC | chr5:6695520-6691109 | 20130731
          Length = 267

 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 1/80 (1%)

Query: 53  RGIMKPRKISPEMQSICGVPEISRTQALKHIWAYIKENNLQDPENKKLIRCDEKLKKVFA 112
           +G + P ++S  +    G  E+SR+  +K +W YIK NNLQDP +K+ I CDEKLK++F 
Sbjct: 186 KGFLAPLQLSDALAKFLGESELSRSDVIKRMWDYIKGNNLQDPSDKRQILCDEKLKELFD 245

Query: 113 GKDEVGMLEIAGLISPHFLK 132
               VG   +  L++PHF+K
Sbjct: 246 VDSFVG-FTVTKLLAPHFIK 264



 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 49/69 (71%), Gaps = 1/69 (1%)

Query: 61  ISPEMQSICGVPEISRTQALKHIWAYIKENNLQDPENKKLIRCDEKLKKVFAGKDEVGML 120
           +SP++Q   G PE++RT+ +K +WAYI+E +LQDP N++ I CDE L+ +F G D + M 
Sbjct: 61  LSPQLQEFVGAPEMARTEVVKQLWAYIREKDLQDPNNRRNIICDEPLRALF-GVDTINMF 119

Query: 121 EIAGLISPH 129
           ++  +++ H
Sbjct: 120 QMNKVLAKH 128


>Medtr3g055330.2 | SWIB/MDM2 domain protein | HC |
           chr3:21756054-21752893 | 20130731
          Length = 306

 Score = 72.0 bits (175), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/78 (43%), Positives = 52/78 (66%), Gaps = 1/78 (1%)

Query: 54  GIMKPRKISPEMQSICGVPEISRTQALKHIWAYIKENNLQDPENKKLIRCDEKLKKVFAG 113
           G+ K   +SPE+Q I G P + RT+ +K +WAYIK+NNLQDP NK+ I C+++L+ VF  
Sbjct: 159 GLNKLCGVSPELQVIVGQPAMPRTEIVKQLWAYIKKNNLQDPSNKRKIICNDELRVVFE- 217

Query: 114 KDEVGMLEIAGLISPHFL 131
            D   M ++  L++ H +
Sbjct: 218 TDCTDMFKMNKLLAKHII 235


>Medtr3g055330.1 | SWIB/MDM2 domain protein | HC |
           chr3:21756054-21752570 | 20130731
          Length = 344

 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/78 (43%), Positives = 52/78 (66%), Gaps = 1/78 (1%)

Query: 54  GIMKPRKISPEMQSICGVPEISRTQALKHIWAYIKENNLQDPENKKLIRCDEKLKKVFAG 113
           G+ K   +SPE+Q I G P + RT+ +K +WAYIK+NNLQDP NK+ I C+++L+ VF  
Sbjct: 159 GLNKLCGVSPELQVIVGQPAMPRTEIVKQLWAYIKKNNLQDPSNKRKIICNDELRVVFE- 217

Query: 114 KDEVGMLEIAGLISPHFL 131
            D   M ++  L++ H +
Sbjct: 218 TDCTDMFKMNKLLAKHII 235



 Score = 49.7 bits (117), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)

Query: 61  ISPEMQSICGVP--EISRTQALKHIWAYIKENNLQDPENKKLIRCDEKLKKVFAGKDEVG 118
           IS  + +  GV   E+ +T+ L+ IW YIK N L+DP N   I CD KL+++F G + + 
Sbjct: 269 ISDSLANFFGVTGREMLQTEVLRRIWEYIKVNQLEDPVNPMAIMCDAKLQEIF-GCESIS 327

Query: 119 MLEIAGLISPHFL 131
            L I  ++  H +
Sbjct: 328 ALGIPEVLGRHHI 340


>Medtr3g053350.1 | PPR containing plant-like protein | HC |
           chr3:21211857-21206311 | 20130731
          Length = 852

 Score = 66.6 bits (161), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 31/40 (77%), Positives = 34/40 (85%)

Query: 89  ENNLQDPENKKLIRCDEKLKKVFAGKDEVGMLEIAGLISP 128
           E+NLQDPENK+ IR DE LKKVFAG+DE GMLEIA L SP
Sbjct: 62  EHNLQDPENKRPIRFDENLKKVFAGRDEFGMLEIAELTSP 101


>Medtr3g053350.2 | PPR containing plant-like protein | HC |
           chr3:21211870-21205924 | 20130731
          Length = 852

 Score = 66.6 bits (161), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 31/40 (77%), Positives = 34/40 (85%)

Query: 89  ENNLQDPENKKLIRCDEKLKKVFAGKDEVGMLEIAGLISP 128
           E+NLQDPENK+ IR DE LKKVFAG+DE GMLEIA L SP
Sbjct: 62  EHNLQDPENKRPIRFDENLKKVFAGRDEFGMLEIAELTSP 101


>Medtr6g023835.1 | chromatin remodeling complex subunit | HC |
           chr6:8385402-8388774 | 20130731
          Length = 558

 Score = 52.8 bits (125), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 60  KISPEMQSICGVPEISRTQALKHIWAYIKENNLQDPENKKLIRCDEKLKKVFAGKDEVGM 119
           K+SP +  +  +   +R + +  IW Y+K   LQ+P +     CD+ L+KVF G+++V  
Sbjct: 344 KLSPALTEVLAIDVDTRPRIIAAIWHYVKARKLQNPSDPSFFHCDQPLQKVF-GEEKVKF 402

Query: 120 LEIAGLISPHFL 131
             ++  ISPH  
Sbjct: 403 TTVSQKISPHLF 414


>Medtr6g023835.2 | chromatin remodeling complex subunit | HC |
           chr6:8385402-8388774 | 20130731
          Length = 558

 Score = 52.8 bits (125), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 60  KISPEMQSICGVPEISRTQALKHIWAYIKENNLQDPENKKLIRCDEKLKKVFAGKDEVGM 119
           K+SP +  +  +   +R + +  IW Y+K   LQ+P +     CD+ L+KVF G+++V  
Sbjct: 344 KLSPALTEVLAIDVDTRPRIIAAIWHYVKARKLQNPSDPSFFHCDQPLQKVF-GEEKVKF 402

Query: 120 LEIAGLISPHFL 131
             ++  ISPH  
Sbjct: 403 TTVSQKISPHLF 414


>Medtr6g023835.3 | chromatin remodeling complex subunit | HC |
           chr6:8385403-8388774 | 20130731
          Length = 558

 Score = 52.8 bits (125), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 60  KISPEMQSICGVPEISRTQALKHIWAYIKENNLQDPENKKLIRCDEKLKKVFAGKDEVGM 119
           K+SP +  +  +   +R + +  IW Y+K   LQ+P +     CD+ L+KVF G+++V  
Sbjct: 344 KLSPALTEVLAIDVDTRPRIIAAIWHYVKARKLQNPSDPSFFHCDQPLQKVF-GEEKVKF 402

Query: 120 LEIAGLISPHFL 131
             ++  ISPH  
Sbjct: 403 TTVSQKISPHLF 414


>Medtr5g021500.1 | zinc finger CCCH domain protein | HC |
           chr5:8311147-8303973 | 20130731
          Length = 1265

 Score = 51.6 bits (122), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/46 (50%), Positives = 33/46 (71%), Gaps = 1/46 (2%)

Query: 86  YIKENNLQDPENKKLIRCDEKLKKVFAGKDEVGMLEIAGLISPHFL 131
           Y+K+NNL+DP+ K LI CD +L  +F GK  +G +E+  L+ PHFL
Sbjct: 335 YVKKNNLRDPQQKSLIVCDSRLVNLF-GKARLGYIEMLMLLEPHFL 379