Miyakogusa Predicted Gene

Lj1g3v0003100.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0003100.1 Non Characterized Hit- tr|F7HTZ3|F7HTZ3_CALJA
Uncharacterized protein OS=Callithrix jacchus
GN=LOC10,35.52,4e-19,UBC-like,Ubiquitin-conjugating enzyme/RWD-like;
no description,Ubiquitin-conjugating enzyme/RWD-like,CUFF.25108.1
         (180 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g015590.1 | ubiquitin-conjugating enzyme family protein | ...   249   8e-67

>Medtr8g015590.1 | ubiquitin-conjugating enzyme family protein | HC
           | chr8:5110857-5117897 | 20130731
          Length = 254

 Score =  249 bits (637), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 139/181 (76%), Positives = 148/181 (81%), Gaps = 3/181 (1%)

Query: 1   MTDYAQEQEMEIEALEAILMDEFKEIHSGESGLSTSNRCFQIKI-AQDEDGDMPISYPAQ 59
           MTDYAQEQEMEIEALEAILMDEFKEIHSGESGLSTSNRCFQIKI AQ+EDGD   + PAQ
Sbjct: 1   MTDYAQEQEMEIEALEAILMDEFKEIHSGESGLSTSNRCFQIKITAQEEDGDESNTNPAQ 60

Query: 60  -LGLIFAHTERYPDEPPLLNVTSLQGIPPEDLRAVKEKLQQEASENLGMAMIYTLVTSAK 118
            L LIFAHTE+YPDEPPLLNV+SLQGI  EDLR +K+KLQQEASENLGMAMIYTLV+SAK
Sbjct: 61  QLALIFAHTEKYPDEPPLLNVSSLQGISSEDLRILKDKLQQEASENLGMAMIYTLVSSAK 120

Query: 119 EWLDERFCQDSGDVSAEAEEAAKEDIVVPHGEPVTVETFXXXXXXXXXXXXXXXXXXMPE 178
           EWL ER+C+DS D  AEAEEAAKEDIVVPHGE VTVETF                  MPE
Sbjct: 121 EWLTERYCEDS-DGDAEAEEAAKEDIVVPHGEAVTVETFLAWRERFEAELALERAKLMPE 179

Query: 179 S 179
           S
Sbjct: 180 S 180