Miyakogusa Predicted Gene

Lj0g3v0364439.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0364439.1 Non Characterized Hit- tr|I1MZ94|I1MZ94_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.38897
PE,97.56,9e-16,RCC1_3,Regulator of chromosome condensation, RCC1; no
description,Regulator of chromosome condensati,CUFF.25105.1
         (61 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g069030.1 | chromosome condensation regulator RCC1 repeat ...    86   7e-18
Medtr7g063440.2 | chromosome condensation regulator RCC1 repeat ...    72   1e-13
Medtr7g063440.1 | chromosome condensation regulator RCC1 repeat ...    72   1e-13

>Medtr3g069030.1 | chromosome condensation regulator RCC1 repeat
           protein | HC | chr3:30896246-30902315 | 20130731
          Length = 464

 Score = 85.9 bits (211), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 41/56 (73%), Positives = 45/56 (80%), Gaps = 6/56 (10%)

Query: 12  TDSCNFWVW------QLGLGDVIDRNVPSEVTIEGCVAKNVACGWWHTLLLAESPT 61
           TD+   + W      QLGLGDVIDRN+PSEV IEGC+AKNVACGWWHTLLLAESPT
Sbjct: 409 TDNGKVFSWGWNKYGQLGLGDVIDRNIPSEVAIEGCIAKNVACGWWHTLLLAESPT 464


>Medtr7g063440.2 | chromosome condensation regulator RCC1 repeat
           protein | HC | chr7:23112105-23121349 | 20130731
          Length = 390

 Score = 72.0 bits (175), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 39/55 (70%), Gaps = 6/55 (10%)

Query: 12  TDSCNFWVW------QLGLGDVIDRNVPSEVTIEGCVAKNVACGWWHTLLLAESP 60
           TD  + + W      QLGLGD +DRN+PS V+I GC  +NVACGWWHTLL+A+ P
Sbjct: 335 TDDGHLFTWGWNKYGQLGLGDSVDRNIPSRVSISGCRPRNVACGWWHTLLMADKP 389


>Medtr7g063440.1 | chromosome condensation regulator RCC1 repeat
           protein | HC | chr7:23112105-23121349 | 20130731
          Length = 482

 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 39/55 (70%), Gaps = 6/55 (10%)

Query: 12  TDSCNFWVW------QLGLGDVIDRNVPSEVTIEGCVAKNVACGWWHTLLLAESP 60
           TD  + + W      QLGLGD +DRN+PS V+I GC  +NVACGWWHTLL+A+ P
Sbjct: 427 TDDGHLFTWGWNKYGQLGLGDSVDRNIPSRVSISGCRPRNVACGWWHTLLMADKP 481