Miyakogusa Predicted Gene

Lj0g3v0364329.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0364329.1 tr|A9SZZ9|A9SZZ9_PHYPA RNA polymerase II
transcription elongation factor SPT5 OS=Physcomitrella
pate,45.97,1e-18,In Spt5p, this domain may confer affinity
fo,Transcription antitermination protein, NusG,
N-terminal,gene.g28661.t1.1
         (419 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g089910.1 | transcription elongation factor SPT5-like prot...   244   1e-64
Medtr1g023975.1 | global transcription factor group protein | HC...   180   2e-45
Medtr7g050470.1 | transcription elongation factor SPT5-like prot...   137   1e-32
Medtr1g111560.1 | transcription elongation factor Spt5-like prot...    80   4e-15

>Medtr3g089910.1 | transcription elongation factor SPT5-like
           protein, putative | HC | chr3:40863011-40870564 |
           20130731
          Length = 1040

 Score =  244 bits (623), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 139/234 (59%), Positives = 161/234 (68%), Gaps = 44/234 (18%)

Query: 76  GADLPEEVDGRRMCGSRVLPYFKEDHDDLEAMAASIEKRYGR-RLEDYNEEIAYVEQ-AF 133
           G D+ +E D R     R  P+ +EDH+DLE MA  I++RYG+ RL +Y+EE   VEQ A 
Sbjct: 119 GPDVQDEDDNRGRPRHRQPPH-QEDHEDLEEMARRIQERYGKQRLAEYDEETTDVEQQAL 177

Query: 134 LPSVRDPKLWMLKCAIGQERKTAVCLMQKCMNKGSELKIRSAIALDHLKNYIYVEADKEA 193
           LPSVRDPKLWM+KCAIG+ER+TAVCLMQK ++KGSEL+IRSAIALDHLKNYIYVEADKEA
Sbjct: 178 LPSVRDPKLWMVKCAIGRERETAVCLMQKYIDKGSELQIRSAIALDHLKNYIYVEADKEA 237

Query: 194 HVREACKGLRSLFGQKPTLVPVREMTGVLSVESKAANLARDARVRRKI------------ 241
           HVREACKGLR++FGQK TLVP+REMT VLSVESKA +LARD  VR KI            
Sbjct: 238 HVREACKGLRNIFGQKITLVPIREMTDVLSVESKAIDLARDTWVRMKIGTYKGDLAKVVD 297

Query: 242 --------------------------GRELVKKKAFVPPHR---INEARELHKR 266
                                     GRE+VKKKAFVPP R   + EARELH R
Sbjct: 298 VDNVRQRVRVKLIPRIDLQALANKLEGREVVKKKAFVPPPRFMNVEEARELHIR 351



 Score =  169 bits (427), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 81/111 (72%), Positives = 94/111 (84%)

Query: 265 KRQFMIGDFVLVINGDLKNLKGWVEKVDEDIVHIRPKNEGLPKTLTLNKKELCKYFEPGS 324
           K  FM GD V+VI GDLKNLKGWVEKVDED VHIRP+ + LPKTL +N+KELCKYFEPG+
Sbjct: 422 KGHFMKGDAVIVIKGDLKNLKGWVEKVDEDNVHIRPEMKDLPKTLAVNEKELCKYFEPGN 481

Query: 325 HVKVVAGAEEGETGMVVKVEQHVMVIISDTTKQQICVFADHVMESSGVIAG 375
           HVKVV+GA+EG TGMVVKVEQHV+++ISDTTK+ I  FAD V+ESS V  G
Sbjct: 482 HVKVVSGAQEGATGMVVKVEQHVLILISDTTKEHIRAFADDVVESSEVTTG 532


>Medtr1g023975.1 | global transcription factor group protein | HC |
           chr1:7742965-7743951 | 20130731
          Length = 193

 Score =  180 bits (457), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 94/142 (66%), Positives = 111/142 (78%), Gaps = 6/142 (4%)

Query: 107 MAASIEKRYG--RRLEDYNEEIAYVEQ-AFLPSVRDPKLWMLKCAIGQERKTAVCLMQKC 163
           M   I +RYG  R  E+Y+EE   VEQ + LPSVRDPKLWM+KC IG+ER++AVCLMQK 
Sbjct: 1   MERRIHERYGKQRLAEEYDEETTDVEQQSLLPSVRDPKLWMVKCVIGRERESAVCLMQKY 60

Query: 164 MNKGSELKIRSAIALDHLKNYIYVEADKEAHVREACKGLR---SLFGQKPTLVPVREMTG 220
           +NKGS+L+IRSAIALDHLKNYIYVEADKEAHVRE    L+      G++ TLVP+REMT 
Sbjct: 61  INKGSDLQIRSAIALDHLKNYIYVEADKEAHVREVLYCLQRSSQYIGRQITLVPIREMTD 120

Query: 221 VLSVESKAANLARDARVRRKIG 242
           VLSVESKA +LARD  +R KIG
Sbjct: 121 VLSVESKAIDLARDTWIRMKIG 142


>Medtr7g050470.1 | transcription elongation factor SPT5-like
           protein, putative | LC | chr7:16835096-16837074 |
           20130731
          Length = 241

 Score =  137 bits (346), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 83/242 (34%), Positives = 138/242 (57%), Gaps = 25/242 (10%)

Query: 130 EQAFLPSVRDPKLWMLKCAIGQERKTAVCLMQKCMNKGSELKIRSAIALDHLKNYIYVEA 189
           E+  + S+ DPKLW ++C  G+E++  + LMQK M K +   I SA  ++ L   +YVEA
Sbjct: 25  EEKNVSSLEDPKLWKVQCTAGREKEAVIRLMQKRMQKCT---IFSAFVVESLPKCVYVEA 81

Query: 190 DKEAHVREACKGLRSLFGQKPTLVPVREMTGVLSVESKAANLARDARVRRKIGRELVKKK 249
            KE+ V+EACKG+++L+ +K   VP+ EM  ++++ SK+    ++     + G+      
Sbjct: 82  HKESDVKEACKGVQTLYCKKIIAVPMNEMNDLMTLASKSNKEEQNFTQSGESGK------ 135

Query: 250 AFVPPHRINEARELHKRQFMIGDFVLVINGDLKNLKGWVEKVDEDIVHIRPKNEGLPKTL 309
                          K+QF  GD V+V +G+ +     V+KV+E  V IR  +  L  + 
Sbjct: 136 ---------------KQQFRKGDIVMVTDGETEGKIKVVDKVEEGYVLIRAIDH-LSGSY 179

Query: 310 TLNKKELCKYFEPGSHVKVVAGAEEGETGMVVKVEQHVMVIISDTTKQQICVFADHVMES 369
            +   ++ K+F+ G  VKVV+G +EGETG VVKV+QH  +++   T+++ICV AD  +  
Sbjct: 180 EVQTSQIRKHFKEGDRVKVVSGTDEGETGFVVKVDQHDHLVLFTDTRKEICVLADDAVLM 239

Query: 370 SG 371
           +G
Sbjct: 240 TG 241


>Medtr1g111560.1 | transcription elongation factor Spt5-like
           protein, putative | HC | chr1:50409508-50417420 |
           20130731
          Length = 1326

 Score = 79.7 bits (195), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 50/155 (32%), Positives = 88/155 (56%), Gaps = 14/155 (9%)

Query: 98  KEDHDDLEAMAASIEKRYGRRLEDYNE-------EIAYVEQAFLPSVRDPKLWMLKCAIG 150
           +E+ D L  M   +  R+ R  ED +E       + + +  A   S+  P +W +KC +G
Sbjct: 99  EEEFDRL--MEERVNSRFFRFAEDGDEFEDKPMEDNSSLHHALKESI--PTIWRVKCTVG 154

Query: 151 QERKTAVCLMQKCMN-KG--SELKIRSAIALDHLKNYIYVEADKEAHVREACKGLRSLFG 207
           +ER +A+CLMQK ++ KG  ++L++ SA A+DH+K +IYVEA+++  + +AC G+  ++ 
Sbjct: 155 RERLSAICLMQKFVHLKGLDTKLQLISAFAVDHVKGFIYVEAERQNDINQACYGITGIYA 214

Query: 208 QKPTLVPVREMTGVLSVESKAANLARDARVRRKIG 242
            +   VP  E+  + SV+ K   ++     R K G
Sbjct: 215 TRVQPVPRNEVFHLFSVKIKKPEISEGMWGRVKGG 249