Miyakogusa Predicted Gene

Lj0g3v0363529.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0363529.1 Non Characterized Hit- tr|I1JVW5|I1JVW5_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,36.18,1e-18,seg,NULL,NODE_105447_length_632_cov_7.200949.path1.1
         (167 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr0268s0050.1 | hypothetical protein | LC | scaffold0268:1530...    62   3e-10

>Medtr0268s0050.1 | hypothetical protein | LC |
           scaffold0268:15306-13703 | 20130731
          Length = 268

 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 64/147 (43%), Gaps = 18/147 (12%)

Query: 24  PESLILGRWTKHAKESVNVQY--QSKGWDPLQTCRYVSLLESCTQMCK--LACRTP---- 75
           P S++L RWTK AK+ +N +    S   DP     YV  LE C +M    L C  P    
Sbjct: 114 PGSVVLERWTKRAKDVINAENGNSSTHRDPAFVTTYVMFLERCKRMANAVLKCGNPNYIH 173

Query: 76  ----VVNNHTKKLEANXXXXXXXXXXXXXXXXXXRHVGNPAVVRTKGCGRGGS---KPNL 128
               +V  HT+ LE+                     +GNP  VR +G    GS   + N 
Sbjct: 174 KTMEMVEQHTEILES--YNMGEVDEMFDRFPETGTRLGNPQRVRKRGGATAGSSTRRANA 231

Query: 129 GGRRRF-HCGICGGLGHNRKTCSMGNQ 154
             +R    CGICGG GHNR +C   +Q
Sbjct: 232 EKKRSTPKCGICGGKGHNRVSCRFRHQ 258