Miyakogusa Predicted Gene

Lj0g3v0362709.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0362709.1 Non Characterized Hit- tr|I3S5I7|I3S5I7_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,100,0,TRP_SYNTHASE_BETA,Tryptophan synthase, beta chain,
conserved site; Tryptophan synthase beta
subunit-,NODE_60639_length_1598_cov_14.050689.path1.1
         (417 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g051120.1 | tryptophan synthase beta type 2 | HC | chr3:20...   784   0.0  
Medtr3g049410.1 | tryptophan synthase beta type 2 | HC | chr3:18...   764   0.0  
Medtr5g005670.1 | tryptophan synthase beta type 2 | HC | chr5:56...   526   e-149
Medtr6g016665.1 | tryptophan synthase beta chain | HC | chr6:637...   120   3e-27

>Medtr3g051120.1 | tryptophan synthase beta type 2 | HC |
           chr3:20169884-20174798 | 20130731
          Length = 412

 Score =  784 bits (2024), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/417 (90%), Positives = 395/417 (94%), Gaps = 5/417 (1%)

Query: 1   MEDRTKQDSEETNGSSVLSHRPDSFGRYGRFGGKYVPETLMHAITELEAAFHSLAHDEAF 60
           ME+    D+      SV S RPDSFGR+GRFGGKYVPETL+HA+TELEAAFHSLA DE F
Sbjct: 1   MENHNNNDT-----GSVQSQRPDSFGRFGRFGGKYVPETLIHALTELEAAFHSLASDEDF 55

Query: 61  QKELGGILRDYVGRESPLYFAERLTEHYRRGDGEGPHVYLKREDLNHTGAHKINNAVAQA 120
           QKEL G+L+DYVGRESPLYFAERLTEHY+RG+GEGPHVYLKREDLNHTGAHKINNAVAQA
Sbjct: 56  QKELAGVLKDYVGRESPLYFAERLTEHYKRGNGEGPHVYLKREDLNHTGAHKINNAVAQA 115

Query: 121 LLAKRLGKKRVIAETGAGQHGVATATVCARFGLECVVYMGAQDMERQSLNVFRMRLLGAE 180
           LLAK+LGKKRVIAETGAGQHGVATATVCARFGLECVVYMGA DMERQ+LNVFRMRLLGAE
Sbjct: 116 LLAKKLGKKRVIAETGAGQHGVATATVCARFGLECVVYMGALDMERQALNVFRMRLLGAE 175

Query: 181 VRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVREFQAVIGKETRKQ 240
           VRAVH+GTATLKDATSEAIRDWVTNVETTHYILGSV GPHPYPMMVREF AVIGKETRKQ
Sbjct: 176 VRAVHAGTATLKDATSEAIRDWVTNVETTHYILGSVCGPHPYPMMVREFHAVIGKETRKQ 235

Query: 241 ALEKWGGKPDILVACVGGGSNAMGLFHEFIDDKDVRLIGVEAAGLGLESGKHAATLTKGE 300
           ALEKWGGKPDILVACVGGGSNA+GLFHEFIDDKDVRLIGVEA+GLGLESGKHAATLTKGE
Sbjct: 236 ALEKWGGKPDILVACVGGGSNAIGLFHEFIDDKDVRLIGVEASGLGLESGKHAATLTKGE 295

Query: 301 IGVLHGAMSYLLQDDDGQIIEPHSISAGLDYPGVGPEHSFLKDVGRAEYYSVTDEEALEA 360
           +GVLHGAMSYLLQDDDGQIIEPHSISAGLDYPGVGPEHSFLKD GRAEYYSVTDEEALEA
Sbjct: 296 VGVLHGAMSYLLQDDDGQIIEPHSISAGLDYPGVGPEHSFLKDAGRAEYYSVTDEEALEA 355

Query: 361 FKRLSQLEGIIPALETSHALAYLEKLCPTLPNGTKVVVNCSGRGDKDVQTASKYFNV 417
           FKR+SQLEGIIPALETSHALAYLEKLCPTLPNGTKVVVNCSGRGDKDVQTA KY  +
Sbjct: 356 FKRVSQLEGIIPALETSHALAYLEKLCPTLPNGTKVVVNCSGRGDKDVQTAMKYLKI 412


>Medtr3g049410.1 | tryptophan synthase beta type 2 | HC |
           chr3:18406693-18402343 | 20130731
          Length = 466

 Score =  764 bits (1974), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/408 (87%), Positives = 389/408 (95%), Gaps = 1/408 (0%)

Query: 10  EETNGSSVLSHRPDSFGRYGRFGGKYVPETLMHAITELEAAFHSLAHDEAFQKELGGILR 69
           ++ NGS VL  RPDSFGR+G+FGGKYVPETLMHA+T LEA+FHSLA DE FQKEL GIL+
Sbjct: 60  QDANGSVVL-QRPDSFGRFGKFGGKYVPETLMHALTLLEASFHSLAGDEDFQKELAGILK 118

Query: 70  DYVGRESPLYFAERLTEHYRRGDGEGPHVYLKREDLNHTGAHKINNAVAQALLAKRLGKK 129
           DYVGRE+PLYFAERLTEHY+  +GEGPH+YLKREDLNHTGAHKINNAVAQALLAK+LGKK
Sbjct: 119 DYVGRETPLYFAERLTEHYKNANGEGPHIYLKREDLNHTGAHKINNAVAQALLAKKLGKK 178

Query: 130 RVIAETGAGQHGVATATVCARFGLECVVYMGAQDMERQSLNVFRMRLLGAEVRAVHSGTA 189
           R+IAETGAGQHGVATATVCARFGLEC++YMGAQDMERQ+LNVFRMRLLGAEVR VH+GTA
Sbjct: 179 RIIAETGAGQHGVATATVCARFGLECIIYMGAQDMERQALNVFRMRLLGAEVRPVHAGTA 238

Query: 190 TLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVREFQAVIGKETRKQALEKWGGKP 249
           TLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVREF AVIGKETRKQALEKWGGKP
Sbjct: 239 TLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVREFHAVIGKETRKQALEKWGGKP 298

Query: 250 DILVACVGGGSNAMGLFHEFIDDKDVRLIGVEAAGLGLESGKHAATLTKGEIGVLHGAMS 309
           DIL+ACVGGGSNAMGLFHEF+DD DVRLIGVEAAG GL SGKHAATLTKGE+GVLHGAMS
Sbjct: 299 DILIACVGGGSNAMGLFHEFVDDSDVRLIGVEAAGFGLNSGKHAATLTKGEVGVLHGAMS 358

Query: 310 YLLQDDDGQIIEPHSISAGLDYPGVGPEHSFLKDVGRAEYYSVTDEEALEAFKRLSQLEG 369
           YLLQDDDGQI+EPHSISAGLDYPGVGPEHSFLKD+GRAEY+S+TD+EALEAFKR+S+LEG
Sbjct: 359 YLLQDDDGQIVEPHSISAGLDYPGVGPEHSFLKDLGRAEYHSITDDEALEAFKRVSRLEG 418

Query: 370 IIPALETSHALAYLEKLCPTLPNGTKVVVNCSGRGDKDVQTASKYFNV 417
           IIPALETSHALAYLEK+CPTLPNGTKVVVN SGRGDKDVQT +KY  +
Sbjct: 419 IIPALETSHALAYLEKICPTLPNGTKVVVNFSGRGDKDVQTVTKYLKL 466


>Medtr5g005670.1 | tryptophan synthase beta type 2 | HC |
           chr5:566635-569952 | 20130731
          Length = 466

 Score =  526 bits (1356), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 258/386 (66%), Positives = 317/386 (82%), Gaps = 5/386 (1%)

Query: 24  SFGRYGRFGGKYVPETLMHAITELEAAFHSLAHDEAFQKELGGILRDYVGRESPLYFAER 83
           S G++GRFGGK+VPETL+    +LEA F +  HD+ FQ EL   LRDYVGRE+PLY A+R
Sbjct: 75  SAGKFGRFGGKFVPETLVVCFNQLEAEFKNALHDDVFQAELATALRDYVGRETPLYHAQR 134

Query: 84  LTEHYR-RGDGEGPHVYLKREDLNHTGAHKINNAVAQALLAKRLGKKRVIAETGAGQHGV 142
           L+EHY+ +  G+GP +YLKREDLNHTG+HK+NNA+AQA++AKR+G K V+  TG+G HG+
Sbjct: 135 LSEHYKSKNGGKGPEIYLKREDLNHTGSHKMNNALAQAMIAKRIGLKSVVTATGSGHHGL 194

Query: 143 ATATVCARFGLECVVYMGAQDMERQSLNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDW 202
           ATA  CA+  LEC V+M A+DM+RQS NV  M+LLGA+V AV+      KDA+SEA R W
Sbjct: 195 ATAAACAKLALECTVFMAAKDMDRQSSNVRLMKLLGAKVEAVN---GCFKDASSEAFRCW 251

Query: 203 VTNVETTHYILGSVAGPHPYPMMVREFQAVIGKETRKQALEKWGGKPDILVACVGGGSNA 262
           V ++E ++++ GS  GPHP P MVREFQ+VIGKETRKQA EKWGGKPDI+VA VG GSNA
Sbjct: 252 VGDLENSYHLSGSAVGPHPCPTMVREFQSVIGKETRKQAWEKWGGKPDIIVASVGTGSNA 311

Query: 263 MGLFHEFIDDKDVRLIGVEAAGLGLESGKHAATLTKGEIGVLHGAMSYLLQDDDGQIIEP 322
           +G+FHEF+ D DVRLIGVEAAGLGLESGKH++TLTKGE+GV HGA+SYLLQD DGQIIEP
Sbjct: 312 LGMFHEFLSDTDVRLIGVEAAGLGLESGKHSSTLTKGEMGVYHGAISYLLQDGDGQIIEP 371

Query: 323 HSISAGLDYPGVGPEHSFLKDVGRAEYYSVTDEEALEAFKRLSQLEGIIPALETSHALAY 382
           HSI+AG++YPGVGPE SFLK+ GRAE+   TDEEAL+A++RL +LEGI P+LE +HALA 
Sbjct: 372 HSIAAGMEYPGVGPELSFLKESGRAEFCVATDEEALDAYERLCKLEGIFPSLEAAHALAI 431

Query: 383 LEKLCPTLPN-GTKVVVNCSGRGDKD 407
           L+K+ PTLPN   KVVVNCSGRGDKD
Sbjct: 432 LDKVVPTLPNDNIKVVVNCSGRGDKD 457


>Medtr6g016665.1 | tryptophan synthase beta chain | HC |
           chr6:6372084-6376544 | 20130731
          Length = 501

 Score =  120 bits (300), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 104/330 (31%), Positives = 147/330 (44%), Gaps = 35/330 (10%)

Query: 72  VGRESPLYFAERLTEHYRRGDGEGPHVYLKREDLNHTGAHKINNAVAQALLAKRLGKKRV 131
           + R +PL  A+RL +           +Y K E ++  G+HK N+A+ QA    + G K V
Sbjct: 124 LWRPTPLIRAKRLEKLLDTPA----RIYYKYEGVSPAGSHKPNSAIPQAWYNLQEGVKNV 179

Query: 132 IAETGAGQHGVATATVCARFGLECVVYMGAQDMERQSLNVFRMRLLGAEVRAVHS----- 186
           + ETGAGQ G A A  C+ FGL C V+      + +      M+  GA V    S     
Sbjct: 180 VTETGAGQWGSALAFACSIFGLGCEVWQVRASYDSKPYRRLMMQTWGANVHPSPSMLTEA 239

Query: 187 ----------GTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVREFQAVIGKE 236
                        +L  A SEA+     N + T Y LGSV         V   Q+VIG+E
Sbjct: 240 GQRILQNDPTSPGSLGIAISEAVEIAAKNPD-TKYCLGSVLN------HVLLHQSVIGEE 292

Query: 237 TRKQALEKWGGKPDILVACVGGGSNAMGLFHEFIDDKDVRLIGVEAAGLGLESGKHAATL 296
             KQ +E  G  PD+++ C GGGSN  GL   FI +K    I      +         +L
Sbjct: 293 CIKQ-MEAIGETPDVIIGCTGGGSNFAGLSFPFIREKLNNKINPVIRAV---EPTACPSL 348

Query: 297 TKG----EIGVLHGAMSYLLQDDDGQIIEPHSISA-GLDYPGVGPEHSFLKDVGRAEYYS 351
           TKG    + G   G    +     G    P  I A GL Y G+ P  S + ++G  E  S
Sbjct: 349 TKGIYTYDYGDTAGLTPLMKMHTLGHDFVPDPIHAGGLRYHGMAPLISHVYELGLMEAIS 408

Query: 352 VTDEEALEAFKRLSQLEGIIPALETSHALA 381
           +   E  +   + ++ EG+IPA E +HA+A
Sbjct: 409 IPQTECFQGAIQFARSEGLIPAPEPTHAIA 438