Miyakogusa Predicted Gene

Lj0g3v0362259.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0362259.1 tr|G7KUA6|G7KUA6_MEDTR U11/U12 small nuclear
ribonucleoprotein 35 kDa protein OS=Medicago
truncatula,46.67,0.0000000001,RRM,RNA recognition motif domain;
seg,NULL; no description,Nucleotide-binding, alpha-beta plait;
RRM,CUFF.24962.1
         (358 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g082150.1 | U1 small nuclear ribonucleoprotein | LC | chr7...   407   e-113
Medtr8g077840.4 | U1 small nuclear ribonucleoprotein 70 kDa prot...    94   2e-19
Medtr8g077840.2 | U1 small nuclear ribonucleoprotein 70 kDa prot...    94   2e-19
Medtr8g077840.3 | U1 small nuclear ribonucleoprotein 70 kDa prot...    94   2e-19
Medtr8g077840.1 | U1 small nuclear ribonucleoprotein 70 kDa prot...    94   2e-19
Medtr6g084140.1 | peptidyl-prolyl cis-trans isomerase-like prote...    62   7e-10
Medtr6g084140.2 | peptidyl-prolyl cis-trans isomerase-like prote...    62   8e-10
Medtr8g442420.1 | peptidyl-prolyl cis-trans isomerase-like prote...    62   9e-10
Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein...    52   9e-07
Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein...    50   3e-06
Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein...    50   3e-06
Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein...    50   3e-06
Medtr7g117495.1 | RNA-binding (RRM/RBD/RNP motif) family protein...    50   3e-06
Medtr7g117495.2 | RNA-binding (RRM/RBD/RNP motif) family protein...    50   4e-06

>Medtr7g082150.1 | U1 small nuclear ribonucleoprotein | LC |
           chr7:31471924-31467830 | 20130731
          Length = 566

 Score =  407 bits (1045), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 189/244 (77%), Positives = 213/244 (87%), Gaps = 3/244 (1%)

Query: 1   MSLRAKNLNCVFYADSYHPIQAGSIDGTDIVPHDNAIYRAQLCSSIGLYDPFGDPKSIGD 60
           M+ R++NLN VFY+++YHPIQAGSIDGTDIVPHDNAI+RAQLCSSIGLYDPFGDPK+ GD
Sbjct: 1   MNARSRNLNSVFYSNAYHPIQAGSIDGTDIVPHDNAIFRAQLCSSIGLYDPFGDPKATGD 60

Query: 61  PYCTLFVGRLSPLTTEDTIRKVMSKYGRVKNLRLVRDIVTGASCGYAFVEFEKDREMRRA 120
           PYCTLFVGRLS LTTE+T+RKVMS++G+VKNLRLVRDIVTGAS GYAFVEFE +REMRRA
Sbjct: 61  PYCTLFVGRLSRLTTEETLRKVMSEFGQVKNLRLVRDIVTGASRGYAFVEFETEREMRRA 120

Query: 121 YMDAHHLIVDDCEIIVDYNRQRLMPGWIPXXXXXXXXXXXXXXQLRFGGREKPFRAPLKP 180
           YMDAHHLIVDDCEIIVDYNRQ+LMPGWIP              QLRFGGREKPFRAPLKP
Sbjct: 121 YMDAHHLIVDDCEIIVDYNRQQLMPGWIPRRLGGGLSGNKESGQLRFGGREKPFRAPLKP 180

Query: 181 IPYEELKKLGIPPPPEGRYMSRFQVPSPPRREKSLLDREEESHRRGSNDRSSV---DMDE 237
           IPYEELKKLGIPPPPEG YMSRFQVPSPPRR+ +L D++E+S RRGS++R+      M+E
Sbjct: 181 IPYEELKKLGIPPPPEGSYMSRFQVPSPPRRDTNLSDKDEDSDRRGSSERNMTKKSKMEE 240

Query: 238 GHYK 241
            HYK
Sbjct: 241 EHYK 244


>Medtr8g077840.4 | U1 small nuclear ribonucleoprotein 70 kDa
           protein, putative | HC | chr8:33136013-33130173 |
           20130731
          Length = 502

 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 45/110 (40%), Positives = 61/110 (55%)

Query: 40  AQLCSSIGLYDPFGDPKSIGDPYCTLFVGRLSPLTTEDTIRKVMSKYGRVKNLRLVRDIV 99
           A+    +  YDP  DP   GDPY TLFV RLS  TTE  I++    YG +K +RLV D  
Sbjct: 112 AKAAEELEKYDPHNDPNISGDPYKTLFVARLSYETTESRIKREFESYGAIKRVRLVTDAE 171

Query: 100 TGASCGYAFVEFEKDREMRRAYMDAHHLIVDDCEIIVDYNRQRLMPGWIP 149
           +    GYAF+E+   R+M+ AY  A    ++   ++VD  R R +P W P
Sbjct: 172 SNKPRGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDVERGRTVPNWRP 221


>Medtr8g077840.2 | U1 small nuclear ribonucleoprotein 70 kDa
           protein, putative | HC | chr8:33135909-33130366 |
           20130731
          Length = 502

 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 45/110 (40%), Positives = 61/110 (55%)

Query: 40  AQLCSSIGLYDPFGDPKSIGDPYCTLFVGRLSPLTTEDTIRKVMSKYGRVKNLRLVRDIV 99
           A+    +  YDP  DP   GDPY TLFV RLS  TTE  I++    YG +K +RLV D  
Sbjct: 112 AKAAEELEKYDPHNDPNISGDPYKTLFVARLSYETTESRIKREFESYGAIKRVRLVTDAE 171

Query: 100 TGASCGYAFVEFEKDREMRRAYMDAHHLIVDDCEIIVDYNRQRLMPGWIP 149
           +    GYAF+E+   R+M+ AY  A    ++   ++VD  R R +P W P
Sbjct: 172 SNKPRGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDVERGRTVPNWRP 221


>Medtr8g077840.3 | U1 small nuclear ribonucleoprotein 70 kDa
           protein, putative | HC | chr8:33136013-33130173 |
           20130731
          Length = 502

 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 45/110 (40%), Positives = 61/110 (55%)

Query: 40  AQLCSSIGLYDPFGDPKSIGDPYCTLFVGRLSPLTTEDTIRKVMSKYGRVKNLRLVRDIV 99
           A+    +  YDP  DP   GDPY TLFV RLS  TTE  I++    YG +K +RLV D  
Sbjct: 112 AKAAEELEKYDPHNDPNISGDPYKTLFVARLSYETTESRIKREFESYGAIKRVRLVTDAE 171

Query: 100 TGASCGYAFVEFEKDREMRRAYMDAHHLIVDDCEIIVDYNRQRLMPGWIP 149
           +    GYAF+E+   R+M+ AY  A    ++   ++VD  R R +P W P
Sbjct: 172 SNKPRGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDVERGRTVPNWRP 221


>Medtr8g077840.1 | U1 small nuclear ribonucleoprotein 70 kDa
           protein, putative | HC | chr8:33136013-33130173 |
           20130731
          Length = 502

 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 45/110 (40%), Positives = 61/110 (55%)

Query: 40  AQLCSSIGLYDPFGDPKSIGDPYCTLFVGRLSPLTTEDTIRKVMSKYGRVKNLRLVRDIV 99
           A+    +  YDP  DP   GDPY TLFV RLS  TTE  I++    YG +K +RLV D  
Sbjct: 112 AKAAEELEKYDPHNDPNISGDPYKTLFVARLSYETTESRIKREFESYGAIKRVRLVTDAE 171

Query: 100 TGASCGYAFVEFEKDREMRRAYMDAHHLIVDDCEIIVDYNRQRLMPGWIP 149
           +    GYAF+E+   R+M+ AY  A    ++   ++VD  R R +P W P
Sbjct: 172 SNKPRGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDVERGRTVPNWRP 221


>Medtr6g084140.1 | peptidyl-prolyl cis-trans isomerase-like protein
           | HC | chr6:31429739-31435838 | 20130731
          Length = 621

 Score = 62.4 bits (150), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 9/100 (9%)

Query: 56  KSIGD--------PYCTLFVGRLSPLTTEDTIRKVMSKYGRVKNLRLVRDIVTGASCGYA 107
           +SIGD        P   LFV +L+P+T ++ +  + S++G V +  ++RD  TG S  YA
Sbjct: 245 ESIGDIPDAEVKPPDNVLFVCKLNPVTEDEDLHTIFSRFGTVSSAEIIRDHKTGDSLCYA 304

Query: 108 FVEFEKDREMRRAYMDAHHLIVDDCEIIVDYNRQRLMPGW 147
           F+EFE      +AY    + ++DD  I VD++ Q +   W
Sbjct: 305 FIEFEDKLACEQAYFKMDNALIDDRRIHVDFS-QSVAKLW 343


>Medtr6g084140.2 | peptidyl-prolyl cis-trans isomerase-like protein
           | HC | chr6:31429321-31436291 | 20130731
          Length = 604

 Score = 62.0 bits (149), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 9/100 (9%)

Query: 56  KSIGD--------PYCTLFVGRLSPLTTEDTIRKVMSKYGRVKNLRLVRDIVTGASCGYA 107
           +SIGD        P   LFV +L+P+T ++ +  + S++G V +  ++RD  TG S  YA
Sbjct: 228 ESIGDIPDAEVKPPDNVLFVCKLNPVTEDEDLHTIFSRFGTVSSAEIIRDHKTGDSLCYA 287

Query: 108 FVEFEKDREMRRAYMDAHHLIVDDCEIIVDYNRQRLMPGW 147
           F+EFE      +AY    + ++DD  I VD++ Q +   W
Sbjct: 288 FIEFEDKLACEQAYFKMDNALIDDRRIHVDFS-QSVAKLW 326


>Medtr8g442420.1 | peptidyl-prolyl cis-trans isomerase-like protein
           | HC | chr8:16036627-16029239 | 20130731
          Length = 605

 Score = 62.0 bits (149), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 9/100 (9%)

Query: 56  KSIGD--------PYCTLFVGRLSPLTTEDTIRKVMSKYGRVKNLRLVRDIVTGASCGYA 107
           +SIGD        P   LFV +L+P+T ++ +  + S++G V +  ++RD  TG S  YA
Sbjct: 228 ESIGDIPDAEVKPPDNVLFVCKLNPVTEDEDLHTIFSRFGTVSSAEIIRDHKTGDSLCYA 287

Query: 108 FVEFEKDREMRRAYMDAHHLIVDDCEIIVDYNRQRLMPGW 147
           F+EFE      +AY    + ++DD  I VD++ Q +   W
Sbjct: 288 FIEFEDKLACEQAYFKMDNALIDDRRIHVDFS-QSVSKLW 326


>Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr4:31628430-31625444 | 20130731
          Length = 144

 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 46/91 (50%)

Query: 56  KSIGDPYCTLFVGRLSPLTTEDTIRKVMSKYGRVKNLRLVRDIVTGASCGYAFVEFEKDR 115
           + + +P   LFV  LS  TT +T+R+   K+G V + R+V D V+G S G+ FV++    
Sbjct: 44  RQMAEPSTNLFVSGLSKRTTTETLREAFQKFGEVVHARVVTDRVSGYSKGFGFVKYATLE 103

Query: 116 EMRRAYMDAHHLIVDDCEIIVDYNRQRLMPG 146
           +  +         ++   I  +Y R R  PG
Sbjct: 104 DAAKGIEGMDGKFLEGWVIFAEYARPRPPPG 134


>Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr7:3986546-3983001 | 20130731
          Length = 253

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 43/85 (50%)

Query: 63  CTLFVGRLSPLTTEDTIRKVMSKYGRVKNLRLVRDIVTGASCGYAFVEFEKDREMRRAYM 122
             LF+G +S  T E  +R+  S+YG V + +++ D  TG S G+ F+ F    E   A  
Sbjct: 40  AKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQ 99

Query: 123 DAHHLIVDDCEIIVDYNRQRLMPGW 147
              +  +D   + V+Y  +R  PG+
Sbjct: 100 AMDNKELDGRTVRVNYATERARPGF 124


>Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr7:3986488-3983001 | 20130731
          Length = 253

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 43/85 (50%)

Query: 63  CTLFVGRLSPLTTEDTIRKVMSKYGRVKNLRLVRDIVTGASCGYAFVEFEKDREMRRAYM 122
             LF+G +S  T E  +R+  S+YG V + +++ D  TG S G+ F+ F    E   A  
Sbjct: 40  AKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQ 99

Query: 123 DAHHLIVDDCEIIVDYNRQRLMPGW 147
              +  +D   + V+Y  +R  PG+
Sbjct: 100 AMDNKELDGRTVRVNYATERARPGF 124


>Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr7:42674424-42676547 | 20130731
          Length = 140

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 40/76 (52%)

Query: 65  LFVGRLSPLTTEDTIRKVMSKYGRVKNLRLVRDIVTGASCGYAFVEFEKDREMRRAYMDA 124
           LFVG LS  TTE T+    S YG+V   +++ D ++  S GY FV F    E  +A  + 
Sbjct: 34  LFVGGLSFHTTEKTLSDAFSNYGQVVEAKVITDRISEKSKGYGFVTFASQDEAEKAITEM 93

Query: 125 HHLIVDDCEIIVDYNR 140
           +   ++   + VDY +
Sbjct: 94  NEKALNGRVVFVDYAK 109


>Medtr7g117495.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr7:48649613-48651189 | 20130731
          Length = 256

 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 1/69 (1%)

Query: 53  GDPKSIGDPYCT-LFVGRLSPLTTEDTIRKVMSKYGRVKNLRLVRDIVTGASCGYAFVEF 111
           G P   GD   T +FVG L+  T +DT+R+   KYG +    ++ D VTG S GY FV F
Sbjct: 7   GSPSQFGDTTLTKVFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYGFVTF 66

Query: 112 EKDREMRRA 120
           +     ++A
Sbjct: 67  KDADSAKKA 75


>Medtr7g117495.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr7:48649576-48651271 | 20130731
          Length = 253

 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 1/69 (1%)

Query: 53  GDPKSIGDPYCT-LFVGRLSPLTTEDTIRKVMSKYGRVKNLRLVRDIVTGASCGYAFVEF 111
           G P   GD   T +FVG L+  T +DT+R+   KYG +    ++ D VTG S GY FV F
Sbjct: 7   GSPSQFGDTTLTKVFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYGFVTF 66

Query: 112 EKDREMRRA 120
           +     ++A
Sbjct: 67  KDADSAKKA 75