Miyakogusa Predicted Gene

Lj0g3v0362209.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0362209.1 Non Characterized Hit- tr|D8RTC3|D8RTC3_SELML
Putative uncharacterized protein OS=Selaginella
moelle,43.36,4e-18,seg,NULL; zf-ribbon_3,NULL,CUFF.24955.1
         (110 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g029990.1 | zinc-ribbon domain protein | HC | chr1:1043390...   165   7e-42

>Medtr1g029990.1 | zinc-ribbon domain protein | HC |
           chr1:10433908-10434617 | 20130731
          Length = 110

 Score =  165 bits (418), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 84/110 (76%), Positives = 91/110 (82%)

Query: 1   MFFFFAGGIEQQVRQVVKSGVGRCINCSSRADLVEYDKVLKLFFVPVWRWPGKEQLLYCQ 60
           MFFFFAGGIE QVRQVVKSGVGRCINC+SRADLVEYDKVLKLFFVPVWRWPGK+ LLYCQ
Sbjct: 1   MFFFFAGGIENQVRQVVKSGVGRCINCNSRADLVEYDKVLKLFFVPVWRWPGKDTLLYCQ 60

Query: 61  DCKFLFPQSYSXXXXXXXXXXXXXXALRCRFCDKEVAAEFAFCPYCGSEL 110
           DCKF+FPQS+S              ALRCRFCD+ VAA+F FCPYCG +L
Sbjct: 61  DCKFMFPQSHSLPPPPSSGGTTLPDALRCRFCDRNVAADFTFCPYCGEQL 110