Miyakogusa Predicted Gene

Lj0g3v0361479.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0361479.1 Non Characterized Hit- tr|H9WPP8|H9WPP8_PINTA
Uncharacterized protein (Fragment) OS=Pinus taeda
GN=0,93.75,0.0000002,seg,NULL; coiled-coil,NULL,CUFF.24899.1
         (117 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g063460.1 | hypothetical protein | HC | chr8:26601615-2659...   172   7e-44

>Medtr8g063460.1 | hypothetical protein | HC |
           chr8:26601615-26597410 | 20130731
          Length = 116

 Score =  172 bits (436), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 90/116 (77%), Positives = 90/116 (77%)

Query: 1   MSLRIKAVVDKFVEELKEALDADIQDRIMKDREMQSYIQXXXXXXXXXXXXWKADLSXXX 60
           MSLRIKAVVDKFVEELKEALDADIQDRIMKDREMQSYIQ            WKADLS   
Sbjct: 1   MSLRIKAVVDKFVEELKEALDADIQDRIMKDREMQSYIQEREREVAEREAAWKADLSRRE 60

Query: 61  XXXXXXXXXLKMERDNLEKEKSVLMGTASNQDNQDGALEITVSGEKYRCLRFTKAK 116
                    LKMERDNLEKEKSVLMGTASNQDNQDGALEITVSGEKYRCLRF K K
Sbjct: 61  AEIVRQEARLKMERDNLEKEKSVLMGTASNQDNQDGALEITVSGEKYRCLRFQKKK 116