Miyakogusa Predicted Gene
- Lj0g3v0361339.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0361339.2 Non Characterized Hit- tr|A5AP91|A5AP91_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,55.1,0.00000000006,domain in helicases and associated with
SANT,HAS subgroup; seg,NULL; SNF2 FAMILY
CHROMODOMAIN-HELICA,CUFF.24920.2
(282 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr1g053955.1 | helicase | HC | chr1:22924323-22942659 | 20130731 387 e-108
Medtr7g056603.2 | helicase/SANT-associated, DNA-binding protein,... 62 8e-10
Medtr7g056603.4 | helicase/SANT-associated, DNA-binding protein,... 62 8e-10
Medtr7g056603.1 | helicase/SANT-associated, DNA-binding protein,... 62 8e-10
Medtr7g056603.3 | helicase/SANT-associated, DNA-binding protein,... 62 8e-10
Medtr7g056603.8 | helicase/SANT-associated, DNA-binding protein,... 61 1e-09
Medtr7g056603.7 | helicase/SANT-associated, DNA-binding protein,... 58 1e-08
Medtr7g056603.5 | helicase/SANT-associated, DNA-binding protein,... 57 1e-08
Medtr7g056603.6 | helicase/SANT-associated, DNA-binding protein,... 57 1e-08
>Medtr1g053955.1 | helicase | HC | chr1:22924323-22942659 | 20130731
Length = 2044
Score = 387 bits (994), Expect = e-108, Method: Compositional matrix adjust.
Identities = 217/312 (69%), Positives = 230/312 (73%), Gaps = 35/312 (11%)
Query: 1 MASKGPRFKFDHETKAKRQKTLEAPKEPRRPKTHWDHVLEEMVWLSKDFESERKWKLAHA 60
MASKGPR K D E K KR K +EA +EPRRPKTHWDHVLEEMVWLSKDFESERKWKLA A
Sbjct: 1 MASKGPRSKIDPEYKVKRHKAVEASREPRRPKTHWDHVLEEMVWLSKDFESERKWKLAQA 60
Query: 61 KKVALKCSK-GFLDQATRGEKKMK----RLRKVALNISKDVKKFWTKIEKLVLYKHQMVL 115
KKVALK SK G LD A RGEKKMK RLRKVALNISKDVKKFWTKIEKLVLYKHQM L
Sbjct: 61 KKVALKASKEGMLDPAARGEKKMKEEEQRLRKVALNISKDVKKFWTKIEKLVLYKHQMEL 120
Query: 116 DEKKKKALDKQLEFLLGQTERYSTMLAENLVDSTSADKPAEKNSAEH------------- 162
DEKKKKALDKQLEFLLGQTERYSTMLAENLVD A+ PAEKNSAEH
Sbjct: 121 DEKKKKALDKQLEFLLGQTERYSTMLAENLVD---ANAPAEKNSAEHQMSFQCKDIGGDI 177
Query: 163 -------HIDYQSDAPDHDEEYGVQSXXXXXXXXXXXXXXXALITKEERQEELTALHDEM 215
+++Y+SDAPDHDEEY VQS ALITKEERQEEL ALH EM
Sbjct: 178 INEPKEANVEYKSDAPDHDEEYDVQSDDVSDDDEQTLEEDEALITKEERQEELAALHSEM 237
Query: 216 NLPIEELLKRYAGEKGELERPQISQEHSEDGAKIARTGDAD-------ENGDLSPVSKIG 268
+LPIEELLKRYAG+KGEL R + S E SEDG +I RTGD D ENGD +S+I
Sbjct: 238 DLPIEELLKRYAGDKGELARQESSPESSEDGGQIVRTGDPDGQEELASENGDHISISEIC 297
Query: 269 TNDSSVVPGRRC 280
TNDSS V GRRC
Sbjct: 298 TNDSSTVLGRRC 309
>Medtr7g056603.2 | helicase/SANT-associated, DNA-binding protein,
putative | HC | chr7:20205243-20190550 | 20130731
Length = 1976
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 32 KTHWDHVLEEMVWLSKDFESERKWKLAHAKKVALKCSKGFLDQATRGEKKMKRLRKVALN 91
K+HWD VLEEM WL+ DF ER WK A ++ C + L R EK+ K L L+
Sbjct: 587 KSHWDFVLEEMAWLANDFAQERLWKTTAAAQL---CHQASLTSRLRFEKQNKNLEMKILS 643
Query: 92 --ISKDVKKFWTKIEKLV 107
++K V +FW +E L+
Sbjct: 644 HTMAKAVMQFWHSVELLL 661
>Medtr7g056603.4 | helicase/SANT-associated, DNA-binding protein,
putative | HC | chr7:20205243-20190550 | 20130731
Length = 1974
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 32 KTHWDHVLEEMVWLSKDFESERKWKLAHAKKVALKCSKGFLDQATRGEKKMKRLRKVALN 91
K+HWD VLEEM WL+ DF ER WK A ++ C + L R EK+ K L L+
Sbjct: 568 KSHWDFVLEEMAWLANDFAQERLWKTTAAAQL---CHQASLTSRLRFEKQNKNLEMKILS 624
Query: 92 --ISKDVKKFWTKIEKLV 107
++K V +FW +E L+
Sbjct: 625 HTMAKAVMQFWHSVELLL 642
>Medtr7g056603.1 | helicase/SANT-associated, DNA-binding protein,
putative | HC | chr7:20205243-20190514 | 20130731
Length = 1993
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 32 KTHWDHVLEEMVWLSKDFESERKWKLAHAKKVALKCSKGFLDQATRGEKKMKRLRKVALN 91
K+HWD VLEEM WL+ DF ER WK A ++ C + L R EK+ K L L+
Sbjct: 587 KSHWDFVLEEMAWLANDFAQERLWKTTAAAQL---CHQASLTSRLRFEKQNKNLEMKILS 643
Query: 92 --ISKDVKKFWTKIEKLV 107
++K V +FW +E L+
Sbjct: 644 HTMAKAVMQFWHSVELLL 661
>Medtr7g056603.3 | helicase/SANT-associated, DNA-binding protein,
putative | HC | chr7:20205243-20190514 | 20130731
Length = 1974
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 32 KTHWDHVLEEMVWLSKDFESERKWKLAHAKKVALKCSKGFLDQATRGEKKMKRLRKVALN 91
K+HWD VLEEM WL+ DF ER WK A ++ C + L R EK+ K L L+
Sbjct: 587 KSHWDFVLEEMAWLANDFAQERLWKTTAAAQL---CHQASLTSRLRFEKQNKNLEMKILS 643
Query: 92 --ISKDVKKFWTKIEKLV 107
++K V +FW +E L+
Sbjct: 644 HTMAKAVMQFWHSVELLL 661
>Medtr7g056603.8 | helicase/SANT-associated, DNA-binding protein,
putative | HC | chr7:20205243-20190472 | 20130731
Length = 1378
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 51/98 (52%), Gaps = 9/98 (9%)
Query: 16 AKRQKTLEAPK----EPRRPKTHWDHVLEEMVWLSKDFESERKWKLAHAKKVALKCSKGF 71
KR++ LE P K+HWD VLEEM WL+ DF ER WK A ++ C +
Sbjct: 567 VKRKRILELSAHTLPSPILRKSHWDFVLEEMAWLANDFAQERLWKTTAAAQL---CHQAS 623
Query: 72 LDQATRGEKKMKRLRKVALN--ISKDVKKFWTKIEKLV 107
L R EK+ K L L+ ++K V +FW +E L+
Sbjct: 624 LTSRLRFEKQNKNLEMKILSHTMAKAVMQFWHSVELLL 661
>Medtr7g056603.7 | helicase/SANT-associated, DNA-binding protein,
putative | HC | chr7:20202990-20190550 | 20130731
Length = 1901
Score = 57.8 bits (138), Expect = 1e-08, Method: Composition-based stats.
Identities = 37/99 (37%), Positives = 52/99 (52%), Gaps = 9/99 (9%)
Query: 15 KAKRQKTLEAPKE----PRRPKTHWDHVLEEMVWLSKDFESERKWKLAHAKKVALKCSKG 70
+ KR++ LE P K+HWD VLEEM WL+ DF ER WK A ++ C +
Sbjct: 491 EVKRKRILELSAHTLPSPILRKSHWDFVLEEMAWLANDFAQERLWKTTAAAQL---CHQA 547
Query: 71 FLDQATRGEKKMKRLRKVALN--ISKDVKKFWTKIEKLV 107
L R EK+ K L L+ ++K V +FW +E L+
Sbjct: 548 SLTSRLRFEKQNKNLEMKILSHTMAKAVMQFWHSVELLL 586
>Medtr7g056603.5 | helicase/SANT-associated, DNA-binding protein,
putative | HC | chr7:20202847-20190550 | 20130731
Length = 1899
Score = 57.4 bits (137), Expect = 1e-08, Method: Composition-based stats.
Identities = 37/99 (37%), Positives = 52/99 (52%), Gaps = 9/99 (9%)
Query: 15 KAKRQKTLEAPKE----PRRPKTHWDHVLEEMVWLSKDFESERKWKLAHAKKVALKCSKG 70
+ KR++ LE P K+HWD VLEEM WL+ DF ER WK A ++ C +
Sbjct: 491 EVKRKRILELSAHTLPSPILRKSHWDFVLEEMAWLANDFAQERLWKTTAAAQL---CHQA 547
Query: 71 FLDQATRGEKKMKRLRKVALN--ISKDVKKFWTKIEKLV 107
L R EK+ K L L+ ++K V +FW +E L+
Sbjct: 548 SLTSRLRFEKQNKNLEMKILSHTMAKAVMQFWHSVELLL 586
>Medtr7g056603.6 | helicase/SANT-associated, DNA-binding protein,
putative | HC | chr7:20202990-20190550 | 20130731
Length = 1918
Score = 57.4 bits (137), Expect = 1e-08, Method: Composition-based stats.
Identities = 37/99 (37%), Positives = 52/99 (52%), Gaps = 9/99 (9%)
Query: 15 KAKRQKTLEAPKE----PRRPKTHWDHVLEEMVWLSKDFESERKWKLAHAKKVALKCSKG 70
+ KR++ LE P K+HWD VLEEM WL+ DF ER WK A ++ C +
Sbjct: 491 EVKRKRILELSAHTLPSPILRKSHWDFVLEEMAWLANDFAQERLWKTTAAAQL---CHQA 547
Query: 71 FLDQATRGEKKMKRLRKVALN--ISKDVKKFWTKIEKLV 107
L R EK+ K L L+ ++K V +FW +E L+
Sbjct: 548 SLTSRLRFEKQNKNLEMKILSHTMAKAVMQFWHSVELLL 586