Miyakogusa Predicted Gene

Lj0g3v0360299.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0360299.1 Non Characterized Hit- tr|J3MA83|J3MA83_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB05G3,85.71,0.0000000000002,seg,NULL; no
description,NULL,CUFF.24803.1
         (187 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g035660.1 | plastid transcriptionally active 14 protein | ...   251   4e-67

>Medtr2g035660.1 | plastid transcriptionally active 14 protein | HC
           | chr2:15050768-15056551 | 20130731
          Length = 480

 Score =  251 bits (640), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 127/187 (67%), Positives = 140/187 (74%), Gaps = 5/187 (2%)

Query: 3   SSSFHLYQPTHCFFSNTQFTGLRHGFFCRPTYSH---AQNKVQPIKASVAAPPFPLFQPP 59
           +SSF LYQ +  FFS TQF GLRHG+  RPTYS    A+NKVQP+KASV   PFPLFQPP
Sbjct: 2   ASSFPLYQTS--FFSKTQFKGLRHGYLWRPTYSFGSCAENKVQPVKASVETAPFPLFQPP 59

Query: 60  KVEEPTSELEPADPDFYRIGYVRSMRAYGIDFKEGPDGFGVYASKDVEPLRRPRVIMEIP 119
           K EE  S+LEP DPDFY+IG+VRSMRAYG+DF EGP+GFGVYASKDVEPLRRPRVIMEIP
Sbjct: 60  KDEETASQLEPVDPDFYKIGFVRSMRAYGVDFMEGPNGFGVYASKDVEPLRRPRVIMEIP 119

Query: 120 LELMLTISKKLPWMXXXXXXXXXXXXXXXXNSTNPETDXXXXXXXXXXYSFDCQENFWQL 179
           LELMLTISKKLPWM                NSTNPETD          +SFDC++NFWQ 
Sbjct: 120 LELMLTISKKLPWMFFPDIIPLGHPIFDIINSTNPETDWDLRLACLLLFSFDCKDNFWQY 179

Query: 180 YGDFLPS 186
           YGDFLPS
Sbjct: 180 YGDFLPS 186