Miyakogusa Predicted Gene

Lj0g3v0359789.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0359789.1 tr|A9T0W7|A9T0W7_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_217831,58.57,2e-19,no description,Nucleotide-binding,
alpha-beta plait; seg,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
,CUFF.24763.1
         (115 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein...   128   1e-30
Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein...   128   1e-30
Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein...   128   1e-30
Medtr4g052940.4 | RNA recognition motif, a.k.a. RRM, RBD protein...   100   3e-22
Medtr4g052940.3 | RNA recognition motif, a.k.a. RRM, RBD protein...    99   6e-22
Medtr4g052940.2 | RNA recognition motif, a.k.a. RRM, RBD protein...    99   6e-22
Medtr4g052940.1 | RNA recognition motif, a.k.a. RRM, RBD protein...    99   6e-22
Medtr7g010360.1 | RNA recognition motif, a.k.a. RRM, RBD protein...    97   3e-21
Medtr7g104800.2 | RNA recognition motif, a.k.a. RRM, RBD protein...    93   5e-20
Medtr7g104800.1 | RNA recognition motif, a.k.a. RRM, RBD protein...    93   5e-20
Medtr7g104800.4 | RNA recognition motif, a.k.a. RRM, RBD protein...    93   5e-20
Medtr7g104800.3 | RNA recognition motif, a.k.a. RRM, RBD protein...    93   5e-20

>Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr7:49025533-49031900 | 20130731
          Length = 479

 Score =  128 bits (321), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 59/75 (78%), Positives = 65/75 (86%)

Query: 39  QAVEGVGPGVESIELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMPSSSFNLCGNTPTV 98
           +AVEGVGPGVESI+LIKDPQN S+NRGFAFVLYYNNACAD+SRQKM S  F L G TPTV
Sbjct: 202 KAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLYYNNACADFSRQKMSSVGFKLDGITPTV 261

Query: 99  RWADPKNSPDHSASS 113
            WADPK SPD SA++
Sbjct: 262 TWADPKTSPDQSAAA 276


>Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr7:49025533-49031887 | 20130731
          Length = 479

 Score =  128 bits (321), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 59/75 (78%), Positives = 65/75 (86%)

Query: 39  QAVEGVGPGVESIELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMPSSSFNLCGNTPTV 98
           +AVEGVGPGVESI+LIKDPQN S+NRGFAFVLYYNNACAD+SRQKM S  F L G TPTV
Sbjct: 202 KAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLYYNNACADFSRQKMSSVGFKLDGITPTV 261

Query: 99  RWADPKNSPDHSASS 113
            WADPK SPD SA++
Sbjct: 262 TWADPKTSPDQSAAA 276


>Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr7:49025861-49031887 | 20130731
          Length = 479

 Score =  128 bits (321), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 59/75 (78%), Positives = 65/75 (86%)

Query: 39  QAVEGVGPGVESIELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMPSSSFNLCGNTPTV 98
           +AVEGVGPGVESI+LIKDPQN S+NRGFAFVLYYNNACAD+SRQKM S  F L G TPTV
Sbjct: 202 KAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLYYNNACADFSRQKMSSVGFKLDGITPTV 261

Query: 99  RWADPKNSPDHSASS 113
            WADPK SPD SA++
Sbjct: 262 TWADPKTSPDQSAAA 276


>Medtr4g052940.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr4:19205591-19210680 | 20130731
          Length = 354

 Score =  100 bits (249), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 48/76 (63%), Positives = 58/76 (76%), Gaps = 1/76 (1%)

Query: 39  QAVEGVGPGVESIELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMPSSSFNLCGNTPTV 98
           + V  +GPGV ++EL+KD +N S NRGFAF+ Y+NN CA+Y RQKM S SF L  N+PTV
Sbjct: 208 KVVTDIGPGVTAVELVKDMKNISNNRGFAFIDYHNNQCAEYGRQKMMSPSFKLGDNSPTV 267

Query: 99  RWADPKNSPDHSASSQ 114
            WADPKNS D SASSQ
Sbjct: 268 SWADPKNS-DSSASSQ 282


>Medtr4g052940.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr4:19205591-19210680 | 20130731
          Length = 504

 Score = 99.4 bits (246), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 48/76 (63%), Positives = 58/76 (76%), Gaps = 1/76 (1%)

Query: 39  QAVEGVGPGVESIELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMPSSSFNLCGNTPTV 98
           + V  +GPGV ++EL+KD +N S NRGFAF+ Y+NN CA+Y RQKM S SF L  N+PTV
Sbjct: 208 KVVTDIGPGVTAVELVKDMKNISNNRGFAFIDYHNNQCAEYGRQKMMSPSFKLGDNSPTV 267

Query: 99  RWADPKNSPDHSASSQ 114
            WADPKNS D SASSQ
Sbjct: 268 SWADPKNS-DSSASSQ 282


>Medtr4g052940.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr4:19205591-19210680 | 20130731
          Length = 504

 Score = 99.4 bits (246), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 48/76 (63%), Positives = 58/76 (76%), Gaps = 1/76 (1%)

Query: 39  QAVEGVGPGVESIELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMPSSSFNLCGNTPTV 98
           + V  +GPGV ++EL+KD +N S NRGFAF+ Y+NN CA+Y RQKM S SF L  N+PTV
Sbjct: 208 KVVTDIGPGVTAVELVKDMKNISNNRGFAFIDYHNNQCAEYGRQKMMSPSFKLGDNSPTV 267

Query: 99  RWADPKNSPDHSASSQ 114
            WADPKNS D SASSQ
Sbjct: 268 SWADPKNS-DSSASSQ 282


>Medtr4g052940.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr4:19205591-19210680 | 20130731
          Length = 504

 Score = 99.4 bits (246), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 48/76 (63%), Positives = 58/76 (76%), Gaps = 1/76 (1%)

Query: 39  QAVEGVGPGVESIELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMPSSSFNLCGNTPTV 98
           + V  +GPGV ++EL+KD +N S NRGFAF+ Y+NN CA+Y RQKM S SF L  N+PTV
Sbjct: 208 KVVTDIGPGVTAVELVKDMKNISNNRGFAFIDYHNNQCAEYGRQKMMSPSFKLGDNSPTV 267

Query: 99  RWADPKNSPDHSASSQ 114
            WADPKNS D SASSQ
Sbjct: 268 SWADPKNS-DSSASSQ 282


>Medtr7g010360.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           LC | chr7:2533493-2542856 | 20130731
          Length = 752

 Score = 97.1 bits (240), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 47/76 (61%), Positives = 58/76 (76%), Gaps = 1/76 (1%)

Query: 39  QAVEGVGPGVESIELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMPSSSFNLCGNTPTV 98
           + V  +GPGV ++ELIKD +N S NRG+AF+ Y+NN CA+YSRQKM S SF L  N PTV
Sbjct: 448 KVVSDIGPGVTAVELIKDMKNISNNRGYAFIDYHNNQCAEYSRQKMTSPSFKLGDNFPTV 507

Query: 99  RWADPKNSPDHSASSQ 114
            WA+PKN+ D SASSQ
Sbjct: 508 NWAEPKNA-DSSASSQ 522


>Medtr7g104800.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr7:42489150-42483010 | 20130731
          Length = 477

 Score = 93.2 bits (230), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 41/67 (61%), Positives = 53/67 (79%)

Query: 39  QAVEGVGPGVESIELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMPSSSFNLCGNTPTV 98
           + V  VGPGV S+EL+KDPQ+ S+NRGFAF+ Y+N+ACA+YSRQKM +S+F L  N   V
Sbjct: 196 KVVAKVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSRQKMSNSNFKLDNNDAIV 255

Query: 99  RWADPKN 105
            WADP+N
Sbjct: 256 SWADPRN 262


>Medtr7g104800.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr7:42489150-42483010 | 20130731
          Length = 477

 Score = 93.2 bits (230), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 41/67 (61%), Positives = 53/67 (79%)

Query: 39  QAVEGVGPGVESIELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMPSSSFNLCGNTPTV 98
           + V  VGPGV S+EL+KDPQ+ S+NRGFAF+ Y+N+ACA+YSRQKM +S+F L  N   V
Sbjct: 196 KVVAKVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSRQKMSNSNFKLDNNDAIV 255

Query: 99  RWADPKN 105
            WADP+N
Sbjct: 256 SWADPRN 262


>Medtr7g104800.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr7:42488464-42483010 | 20130731
          Length = 477

 Score = 93.2 bits (230), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 41/67 (61%), Positives = 53/67 (79%)

Query: 39  QAVEGVGPGVESIELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMPSSSFNLCGNTPTV 98
           + V  VGPGV S+EL+KDPQ+ S+NRGFAF+ Y+N+ACA+YSRQKM +S+F L  N   V
Sbjct: 196 KVVAKVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSRQKMSNSNFKLDNNDAIV 255

Query: 99  RWADPKN 105
            WADP+N
Sbjct: 256 SWADPRN 262


>Medtr7g104800.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr7:42489150-42483010 | 20130731
          Length = 477

 Score = 93.2 bits (230), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 41/67 (61%), Positives = 53/67 (79%)

Query: 39  QAVEGVGPGVESIELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMPSSSFNLCGNTPTV 98
           + V  VGPGV S+EL+KDPQ+ S+NRGFAF+ Y+N+ACA+YSRQKM +S+F L  N   V
Sbjct: 196 KVVAKVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSRQKMSNSNFKLDNNDAIV 255

Query: 99  RWADPKN 105
            WADP+N
Sbjct: 256 SWADPRN 262