Miyakogusa Predicted Gene
- Lj0g3v0359769.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0359769.2 Non Characterized Hit- tr|I1KNT0|I1KNT0_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.56401
PE,84.49,0,FAD/NAD(P)-binding domain,NULL; no description,NULL;
SUBFAMILY NOT NAMED,NULL; PHYTOENE DEHYDROGENAS,CUFF.24762.2
(565 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g134780.1 | All-trans-retinol 13,14-reductase | HC | chr4:... 874 0.0
Medtr1g054965.1 | carotenoid isomerase | HC | chr1:24154122-2414... 183 4e-46
Medtr1g054965.2 | carotenoid isomerase | HC | chr1:24154122-2414... 158 1e-38
Medtr1g054965.4 | carotenoid isomerase | HC | chr1:24154122-2414... 126 5e-29
Medtr1g054965.3 | carotenoid isomerase | HC | chr1:24154122-2414... 102 1e-21
>Medtr4g134780.1 | All-trans-retinol 13,14-reductase | HC |
chr4:56492273-56494696 | 20130731
Length = 579
Score = 874 bits (2259), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/572 (74%), Positives = 468/572 (81%), Gaps = 12/572 (2%)
Query: 5 VGVFTNANLLRY----------HHNSNRKSVVARXXXXXXXXXXQNGE-EADVVVIGSXX 53
VGVF N++R HH+S+ + + + E E DV+VIGS
Sbjct: 9 VGVFP-CNVMRVRKYCSRIDDDHHHSHSNGRIRKGGVVVRNSSNKVDETETDVIVIGSGI 67
Query: 54 XXXXXXXXXXRYEQNVLVLESHDLPGGAAHSFDIKGYKFDSGPSLFSGLQSRGPQANPLA 113
RYEQ+V+V ESHD GGAAHSFD+KGYKFDSGPSLFSGLQSRGPQANPLA
Sbjct: 68 GGLSCAALLARYEQDVVVFESHDHAGGAAHSFDVKGYKFDSGPSLFSGLQSRGPQANPLA 127
Query: 114 QVLDALGESLPCATYDSWKVYLPEGEFLSRIGPTEFSKDLEKYGGPNAVQEWRKLLDAVL 173
QVLDALGES+PCATYDSW V++PE +FLSRIGPTEF KDL Y GP AVQEW+KLLDAVL
Sbjct: 128 QVLDALGESVPCATYDSWMVHVPEADFLSRIGPTEFLKDLHNYAGPEAVQEWQKLLDAVL 187
Query: 174 PLSTAAMALPPLSIRGDLGVLYTAAARYAPSLFKSFVQMGPQGALGATKLLRPFKEILDG 233
PLSTAAMALPPLS+RGD GVLYTAAARYAPSLF +F QMGPQ AL +T+LL PF +ILD
Sbjct: 188 PLSTAAMALPPLSVRGDFGVLYTAAARYAPSLFNTFFQMGPQAALRSTQLLSPFSQILDS 247
Query: 234 LELKDPFLRNWIDLLSFLLAGVKTDGILAAEMIYMFAEWYKPGCCLEYPLDGTAAIVDAL 293
L+LK+PF+RNWIDLLSFLLAGVK+D IL+AEM+YMFAEWYKPG CLEYPLDG A IVDAL
Sbjct: 248 LQLKNPFIRNWIDLLSFLLAGVKSDSILSAEMVYMFAEWYKPGGCLEYPLDGAAGIVDAL 307
Query: 294 VRGLEKFGGRVSLQSHAEKIVVENDRAIGVKLRSGQFIRAKKAVVSNASTWDTLKLLPNE 353
+RGLEKFGGR+SLQSH EKIVVENDRAIGVKLRSGQFIRAKKAVVSNAS WDTLKLLP E
Sbjct: 308 IRGLEKFGGRISLQSHVEKIVVENDRAIGVKLRSGQFIRAKKAVVSNASMWDTLKLLPQE 367
Query: 354 AVPKSYSDRINTTPQCESFMHLHLGFDAEDIPSDLGIHHIVVNDWKRGVDADQXXXXXXX 413
VPKSYS+RINTT QCESFMHLHLGFDAE I SDLGIHHIVVNDW+RGVDADQ
Sbjct: 368 VVPKSYSNRINTTSQCESFMHLHLGFDAEGIRSDLGIHHIVVNDWERGVDADQNVVLISV 427
Query: 414 XXXXXXXXAPPGKHVLHAYLPGTEPYELWEGLDRKSAEYRNLKAERSEVLWRAVEKALGP 473
AP GKHVLHAYLPGTEP+ELWEGLDRKSAEYRNLKA+RSE++WRAVE+A+GP
Sbjct: 428 PSVLTPNLAPIGKHVLHAYLPGTEPFELWEGLDRKSAEYRNLKAQRSEIMWRAVERAVGP 487
Query: 474 GFNREKCEVKLVGSPLTHQRFLRRNRGTYGPAVQAGKETFPGHSTPIPQLYCCGDSTFPG 533
GF+REKCEVKLVGSPLTHQRFLRRNRGTYGPA+QAG +TFPGHSTPIP LYCCGDSTFPG
Sbjct: 488 GFSREKCEVKLVGSPLTHQRFLRRNRGTYGPAIQAGTDTFPGHSTPIPHLYCCGDSTFPG 547
Query: 534 IGVPAVAASGAIVANXXXXXXXXXXXXEAIGI 565
IGVPAVAASGAIVAN +AIGI
Sbjct: 548 IGVPAVAASGAIVANSLVSVSQHSQLLDAIGI 579
>Medtr1g054965.1 | carotenoid isomerase | HC |
chr1:24154122-24148207 | 20130731
Length = 596
Score = 183 bits (465), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 155/527 (29%), Positives = 242/527 (45%), Gaps = 55/527 (10%)
Query: 41 GEEADVVVIGSXXXXXXXXXXXXRYEQNVLVLESHDLPGGAAHSFDIKGYKFDSGPSLFS 100
GE D +VIGS VLVLE + +PGG++ + +GY FD G S+
Sbjct: 76 GEGFDAIVIGSGIGGLVAGTQLAVKGAKVLVLEKYVIPGGSSGFYHREGYTFDVGSSVMF 135
Query: 101 GLQSRGPQANPLAQVLDALG---ESLPCAT--------YDSWKVYLPEGEFLSRIG---P 146
G +G N + Q L+A+G + +P T + S +V+ +F+ + P
Sbjct: 136 GFSDKG-NLNLITQALEAVGCRMQVIPDPTTVHFHLPNHLSVRVHREYDKFIEELTSYFP 194
Query: 147 TEFSKDLEKYGGPNAVQEWRKLLDAVLPLSTAAMALPPLSIRGDLGVLYTAAARYAPSLF 206
E L+ YG E K+ +A+ L ++ P LY LF
Sbjct: 195 HEKDGILKFYG------ECWKIFNALNSLELKSLEEP----------LY---------LF 229
Query: 207 KSFVQMGPQGALGATKLLRPFKEILDGLELKDPFLRNWIDLLSFLLAGVKTDGILAAEMI 266
F Q P L L + ++DP L ++ID F+++ V
Sbjct: 230 GQFFQK-PLECLTLAYYLPQNAGAIARKYIQDPQLLSFIDAECFIVSTVNALQTPMINAS 288
Query: 267 YMFAEWYKPGCCLEYPLDGTAAIVDALVRGLEKFGGRVSLQSHAEKIVVENDRAIGVKLR 326
+ + + G + YPL G I +L +GL G ++ +++ I+ E +A+GV+L
Sbjct: 289 MVLCDRHFGG--INYPLGGVGGIAKSLAKGLVDQGSQILYKANVTSIITEQGKAVGVRLS 346
Query: 327 SGQFIRAKKAVVSNASTWDTL-KLLPNEAVPKSYSDRINTTPQCESFMHLHLGFDAEDIP 385
G+ A K ++SNA+ WDT KL+ E++PK + + SF+ +H+G AE +P
Sbjct: 347 DGREFFA-KTIISNATRWDTFGKLVKGESLPKEEENFQKVYVKAPSFLSIHMGVKAEVLP 405
Query: 386 SDLGIHHIVV-NDWKRGVDADQXXXXXXXXXXXXXXXAPPGKHVLHAYLPGTEPYELWEG 444
D HH V+ N+W ++ AP G+H+LH + T + W+G
Sbjct: 406 PDTDCHHFVLENNWT-SLEEPYGSIFLSIPTILDSSLAPEGRHILHIFT--TSSMDDWQG 462
Query: 445 LDRKSAEYRNLKAERSEVLWRAVEKALGPGFNREKCEVKLVGSPLTHQRFLRRNRGTYGP 504
L R +Y K ++ + +EK L PG R + VG+P TH+R+L R+ GTYGP
Sbjct: 463 LSR--IDYEAKKQVVADEIISRLEKKLFPGL-RSSIDFIEVGTPKTHRRYLARDEGTYGP 519
Query: 505 ---AVQAGKETFPGHSTPIPQLYCCGDSTFPGIGVPAVAASGAIVAN 548
++ G P ++T I LYC GDS FPG GV AVA SG + A+
Sbjct: 520 MPRSIPKGLLGMPFNTTSIDGLYCVGDSCFPGQGVIAVAFSGVMCAH 566
>Medtr1g054965.2 | carotenoid isomerase | HC |
chr1:24154122-24148207 | 20130731
Length = 440
Score = 158 bits (400), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 104/318 (32%), Positives = 164/318 (51%), Gaps = 14/318 (4%)
Query: 236 LKDPFLRNWIDLLSFLLAGVKTDGILAAEMIYMFAEWYKPGCCLEYPLDGTAAIVDALVR 295
++DP L ++ID F+++ V + + + G + YPL G I +L +
Sbjct: 102 IQDPQLLSFIDAECFIVSTVNALQTPMINASMVLCDRHFGG--INYPLGGVGGIAKSLAK 159
Query: 296 GLEKFGGRVSLQSHAEKIVVENDRAIGVKLRSGQFIRAKKAVVSNASTWDTL-KLLPNEA 354
GL G ++ +++ I+ E +A+GV+L G+ A K ++SNA+ WDT KL+ E+
Sbjct: 160 GLVDQGSQILYKANVTSIITEQGKAVGVRLSDGREFFA-KTIISNATRWDTFGKLVKGES 218
Query: 355 VPKSYSDRINTTPQCESFMHLHLGFDAEDIPSDLGIHHIVV-NDWKRGVDADQXXXXXXX 413
+PK + + SF+ +H+G AE +P D HH V+ N+W ++
Sbjct: 219 LPKEEENFQKVYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLENNWT-SLEEPYGSIFLSI 277
Query: 414 XXXXXXXXAPPGKHVLHAYLPGTEPYELWEGLDRKSAEYRNLKAERSEVLWRAVEKALGP 473
AP G+H+LH + T + W+GL R E + + E++ R +EK L P
Sbjct: 278 PTILDSSLAPEGRHILHIFT--TSSMDDWQGLSRIDYEAKK-QVVADEIISR-LEKKLFP 333
Query: 474 GFNREKCEVKLVGSPLTHQRFLRRNRGTYGP---AVQAGKETFPGHSTPIPQLYCCGDST 530
G R + VG+P TH+R+L R+ GTYGP ++ G P ++T I LYC GDS
Sbjct: 334 GL-RSSIDFIEVGTPKTHRRYLARDEGTYGPMPRSIPKGLLGMPFNTTSIDGLYCVGDSC 392
Query: 531 FPGIGVPAVAASGAIVAN 548
FPG GV AVA SG + A+
Sbjct: 393 FPGQGVIAVAFSGVMCAH 410
>Medtr1g054965.4 | carotenoid isomerase | HC |
chr1:24154122-24148207 | 20130731
Length = 519
Score = 126 bits (317), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 126/468 (26%), Positives = 207/468 (44%), Gaps = 55/468 (11%)
Query: 41 GEEADVVVIGSXXXXXXXXXXXXRYEQNVLVLESHDLPGGAAHSFDIKGYKFDSGPSLFS 100
GE D +VIGS VLVLE + +PGG++ + +GY FD G S+
Sbjct: 76 GEGFDAIVIGSGIGGLVAGTQLAVKGAKVLVLEKYVIPGGSSGFYHREGYTFDVGSSVMF 135
Query: 101 GLQSRGPQANPLAQVLDALG---ESLPCAT--------YDSWKVYLPEGEFLSRIG---P 146
G +G N + Q L+A+G + +P T + S +V+ +F+ + P
Sbjct: 136 GFSDKG-NLNLITQALEAVGCRMQVIPDPTTVHFHLPNHLSVRVHREYDKFIEELTSYFP 194
Query: 147 TEFSKDLEKYGGPNAVQEWRKLLDAVLPLSTAAMALPPLSIRGDLGVLYTAAARYAPSLF 206
E L+ YG E K+ +A+ L ++ P LY LF
Sbjct: 195 HEKDGILKFYG------ECWKIFNALNSLELKSLEEP----------LY---------LF 229
Query: 207 KSFVQMGPQGALGATKLLRPFKEILDGLELKDPFLRNWIDLLSFLLAGVKT--DGILAAE 264
F Q P L L + ++DP L ++ID F+++ V ++ A
Sbjct: 230 GQFFQK-PLECLTLAYYLPQNAGAIARKYIQDPQLLSFIDAECFIVSTVNALQTPMINAS 288
Query: 265 MIYMFAEWYKPGCCLEYPLDGTAAIVDALVRGLEKFGGRVSLQSHAEKIVVENDRAIGVK 324
M+ + + G + YPL G I +L +GL G ++ +++ I+ E +A+GV+
Sbjct: 289 MV--LCDRHFGG--INYPLGGVGGIAKSLAKGLVDQGSQILYKANVTSIITEQGKAVGVR 344
Query: 325 LRSGQFIRAKKAVVSNASTWDTL-KLLPNEAVPKSYSDRINTTPQCESFMHLHLGFDAED 383
L G+ A K ++SNA+ WDT KL+ E++PK + + SF+ +H+G AE
Sbjct: 345 LSDGREFFA-KTIISNATRWDTFGKLVKGESLPKEEENFQKVYVKAPSFLSIHMGVKAEV 403
Query: 384 IPSDLGIHHIVV-NDWKRGVDADQXXXXXXXXXXXXXXXAPPGKHVLHAYLPGTEPYELW 442
+P D HH V+ N+W ++ AP G+H+LH + T + W
Sbjct: 404 LPPDTDCHHFVLENNWT-SLEEPYGSIFLSIPTILDSSLAPEGRHILHIFT--TSSMDDW 460
Query: 443 EGLDRKSAEYRNLKAERSEVLWRAVEKALGPGFNREKCEVKLVGSPLT 490
+GL R E + + E++ R +EK L PG +++ PLT
Sbjct: 461 QGLSRIDYEAKK-QVVADEIISR-LEKKLFPGLRSSIDFIEVELKPLT 506
>Medtr1g054965.3 | carotenoid isomerase | HC |
chr1:24154122-24148207 | 20130731
Length = 321
Score = 102 bits (254), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 128/259 (49%), Gaps = 14/259 (5%)
Query: 236 LKDPFLRNWIDLLSFLLAGVKT--DGILAAEMIYMFAEWYKPGCCLEYPLDGTAAIVDAL 293
++DP L ++ID F+++ V ++ A M+ + + G + YPL G I +L
Sbjct: 60 IQDPQLLSFIDAECFIVSTVNALQTPMINASMV--LCDRHFGG--INYPLGGVGGIAKSL 115
Query: 294 VRGLEKFGGRVSLQSHAEKIVVENDRAIGVKLRSGQFIRAKKAVVSNASTWDTL-KLLPN 352
+GL G ++ +++ I+ E +A+GV+L G+ A K ++SNA+ WDT KL+
Sbjct: 116 AKGLVDQGSQILYKANVTSIITEQGKAVGVRLSDGREFFA-KTIISNATRWDTFGKLVKG 174
Query: 353 EAVPKSYSDRINTTPQCESFMHLHLGFDAEDIPSDLGIHHIVV-NDWKRGVDADQXXXXX 411
E++PK + + SF+ +H+G AE +P D HH V+ N+W ++
Sbjct: 175 ESLPKEEENFQKVYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLENNWT-SLEEPYGSIFL 233
Query: 412 XXXXXXXXXXAPPGKHVLHAYLPGTEPYELWEGLDRKSAEYRNLKAERSEVLWRAVEKAL 471
AP G+H+LH + T + W+GL R E + + E++ R +EK L
Sbjct: 234 SIPTILDSSLAPEGRHILHIF--TTSSMDDWQGLSRIDYEAKK-QVVADEIISR-LEKKL 289
Query: 472 GPGFNREKCEVKLVGSPLT 490
PG +++ PLT
Sbjct: 290 FPGLRSSIDFIEVELKPLT 308