Miyakogusa Predicted Gene

Lj0g3v0359629.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0359629.1 tr|B9IFZ5|B9IFZ5_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_777717 PE=4
SV=1,43.87,1e-16,seg,NULL,CUFF.24750.1
         (155 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g019600.1 | transmembrane protein, putative | LC | chr4:61...    67   5e-12

>Medtr4g019600.1 | transmembrane protein, putative | LC |
           chr4:6171269-6171930 | 20130731
          Length = 152

 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 69/173 (39%), Positives = 90/173 (52%), Gaps = 41/173 (23%)

Query: 1   MAQILYLCFLLAVANILLGLAMATT-NKPQNTFQSISAPCSNAPSQSP-----------S 48
           MA++++LCFLLA  N +L   MATT NKPQ + QSIS+P SNAPSQSP           S
Sbjct: 1   MAKLIFLCFLLA--NTILCHVMATTTNKPQISVQSISSPSSNAPSQSPISSQRTNEKESS 58

Query: 49  IGRKLGRHH------SPTPSPSIAPXXXXXXXXXXXXXITNYHQRASVEAGGEVLGSKGQ 102
           IGRK G+H       +P+PSP                     HQ+ S      +L S+G 
Sbjct: 59  IGRKFGKHQHDHIITAPSPSPLEGSILS--------------HQKTS------ILDSQGH 98

Query: 103 VHLLSHHHHS-FDRSXXXXXXXXXXXXXXFFVAVFCYIRATRRHEFETNSECS 154
           +HL++HHHH  FD+S              F VAV+CYI+AT +H    N+  S
Sbjct: 99  IHLVNHHHHHPFDKSMAGGGVILGGLATTFLVAVYCYIKATSKHNKLDNTTTS 151