Miyakogusa Predicted Gene
- Lj0g3v0359259.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0359259.1 tr|B9GU61|B9GU61_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_754603 PE=4
SV=1,54.41,0.0000000001,zf-RING_2,Zinc finger, RING-type; no
description,Zinc finger, RING/FYVE/PHD-type; RING/U-box,NULL;
s,CUFF.24718.1
(343 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr5g058530.1 | zinc finger, C3HC4 type (RING finger) protein ... 126 3e-29
Medtr3g072630.1 | zinc finger, C3HC4 type (RING finger) protein ... 70 3e-12
Medtr2g007340.1 | zinc finger, C3HC4 type (RING finger) protein ... 70 4e-12
Medtr5g088720.1 | zinc finger, C3HC4 type (RING finger) protein ... 70 4e-12
Medtr3g072630.2 | zinc finger, C3HC4 type (RING finger) protein ... 69 5e-12
Medtr5g088720.2 | zinc finger, C3HC4 type (RING finger) protein ... 69 5e-12
Medtr5g088720.3 | zinc finger, C3HC4 type (RING finger) protein ... 69 6e-12
Medtr1g051105.2 | zinc finger, C3HC4 type (RING finger) protein ... 63 4e-10
Medtr1g051105.1 | zinc finger, C3HC4 type (RING finger) protein ... 63 4e-10
Medtr7g074170.1 | zinc finger, C3HC4 type (RING finger) protein ... 62 8e-10
Medtr7g074170.2 | zinc finger, C3HC4 type (RING finger) protein ... 62 8e-10
Medtr0067s0100.2 | zinc finger, C3HC4 type (RING finger) protein... 61 1e-09
Medtr0067s0100.1 | zinc finger, C3HC4 type (RING finger) protein... 61 1e-09
Medtr2g097620.1 | zinc finger, C3HC4 type (RING finger) protein,... 61 2e-09
Medtr3g068005.1 | E3 ubiquitin-protein ligase RING1-like protein... 59 9e-09
Medtr5g080350.1 | E3 ubiquitin-protein ligase RING1-like protein... 58 1e-08
Medtr4g064570.1 | zinc finger (C3HC4-type RING finger) family pr... 58 1e-08
Medtr2g078440.1 | zinc finger, C3HC4 type (RING finger) protein ... 57 2e-08
Medtr6g032960.1 | C3HC4-type RING zinc finger protein | HC | chr... 57 3e-08
Medtr6g079660.2 | zinc finger, C3HC4 type (RING finger) protein ... 56 5e-08
Medtr6g079660.1 | zinc finger, C3HC4 type (RING finger) protein ... 56 5e-08
Medtr4g106960.6 | RING-finger ubiquitin ligase | HC | chr4:43964... 56 6e-08
Medtr8g037150.1 | E3 ubiquitin ligase BIG brother-like protein |... 56 6e-08
Medtr3g025510.1 | anaphase-promoting complex subunit 11 RING-H2 ... 55 7e-08
Medtr4g106960.2 | RING-finger ubiquitin ligase | HC | chr4:43964... 55 7e-08
Medtr4g106960.4 | RING-finger ubiquitin ligase | HC | chr4:43964... 55 7e-08
Medtr4g106960.5 | RING-finger ubiquitin ligase | HC | chr4:43964... 55 8e-08
Medtr4g106960.1 | RING-finger ubiquitin ligase | HC | chr4:43964... 55 9e-08
Medtr4g106960.3 | RING-finger ubiquitin ligase | HC | chr4:43964... 55 9e-08
Medtr2g084630.1 | DNA/RNA helicase | HC | chr2:35865804-35875314... 55 1e-07
Medtr2g084630.2 | DNA/RNA helicase | HC | chr2:35865773-35875405... 55 1e-07
Medtr6g016350.1 | zinc finger, C3HC4 type (RING finger) protein ... 54 1e-07
Medtr3g067995.1 | RING zinc finger protein, putative | HC | chr3... 54 2e-07
Medtr5g041310.1 | zinc finger, C3HC4 type (RING finger) protein ... 54 3e-07
Medtr1g114320.2 | E3 ubiquitin-protein ligase RING1-like protein... 54 3e-07
Medtr1g114320.3 | E3 ubiquitin-protein ligase RING1-like protein... 54 3e-07
Medtr1g114320.1 | E3 ubiquitin-protein ligase RING1-like protein... 54 3e-07
Medtr1g114320.4 | E3 ubiquitin-protein ligase RING1-like protein... 54 3e-07
Medtr3g083480.2 | zinc finger, C3HC4 type (RING finger) protein ... 53 5e-07
Medtr3g083480.1 | zinc finger, C3HC4 type (RING finger) protein ... 53 5e-07
Medtr1g114620.1 | zinc finger, C3HC4 type (RING finger) protein ... 52 6e-07
Medtr1g114620.2 | zinc finger, C3HC4 type (RING finger) protein ... 52 6e-07
Medtr4g110100.1 | zinc finger, C3HC4 type (RING finger) protein ... 52 7e-07
Medtr5g041330.1 | anaphase-promoting complex subunit 11 RING-H2 ... 51 1e-06
Medtr4g064550.1 | zinc finger, C3HC4 type (RING finger) protein ... 51 2e-06
Medtr3g088080.1 | zinc finger, C3HC4 type (RING finger) protein ... 50 3e-06
Medtr4g064560.2 | zinc finger, C3HC4 type (RING finger) protein ... 50 3e-06
Medtr4g064560.1 | zinc finger, C3HC4 type (RING finger) protein ... 50 3e-06
Medtr3g025550.1 | anaphase-promoting complex subunit 11 RING-H2 ... 50 5e-06
Medtr3g067985.1 | C3HC4-type RING zinc finger protein | LC | chr... 49 7e-06
>Medtr5g058530.1 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr5:24201689-24200390 | 20130731
Length = 337
Score = 126 bits (316), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 75/141 (53%), Positives = 92/141 (65%), Gaps = 13/141 (9%)
Query: 159 HKVRISELHRRGEMSHCPICMEEVKVGDQACLLPCTHFYCSECILQWLRLSNNKTCPVCR 218
H V+IS+LH + ++SHCPICMEE K+GDQAC LPC H Y ECIL+WL S KTCPVCR
Sbjct: 208 HIVKISKLHLKDDVSHCPICMEEFKLGDQACQLPCKHTYKFECILRWLNTS--KTCPVCR 265
Query: 219 LQLEGWEDHGNSHSIDETASAWDFFGHQNLPPPSPPLVIGVDQDWDYFLYSSPDSSVTEN 278
LQL+ +E +SI + + D L P SPP V Q+ SS DS V E+
Sbjct: 266 LQLDRFEGQCRPYSILDDEESLD------LEPQSPPQVTDSLQN---LFQSSLDSQVIED 316
Query: 279 NSAGRNSDEADHYDSACEELG 299
+ AG NSDEA+ YDSAC+ELG
Sbjct: 317 D-AGENSDEAE-YDSACDELG 335
>Medtr3g072630.1 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr3:32681229-32680243 | 20130731
Length = 328
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 47/72 (65%), Gaps = 3/72 (4%)
Query: 150 VQDSVINAIHKVRISELHRRGEMSHCPICMEEVKVGDQACLLPCTHFYCSECILQWLRLS 209
V + INAI V+I E E SHCP+C EE ++G +A LPC H Y S+CI+ WLRL
Sbjct: 197 VPERGINAIPTVKI-ESKNLKENSHCPVCQEEFEIGGEARELPCKHIYHSDCIVPWLRLH 255
Query: 210 NNKTCPVCRLQL 221
N +CP+CR ++
Sbjct: 256 N--SCPICRQEI 265
>Medtr2g007340.1 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr2:955202-956149 | 20130731
Length = 315
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 51/77 (66%), Gaps = 3/77 (3%)
Query: 155 INAIHKVRISELHRRGEMSHCPICMEEVKVGDQACLLPCTHFYCSECILQWLRLSNNKTC 214
I A+ V+++E H + +CPIC +E +V Q LPC HFY S+CIL WL++ N TC
Sbjct: 182 IEALPMVKVTETHLASD-PNCPICKDEFEVDVQVRELPCKHFYHSDCILPWLQMHN--TC 238
Query: 215 PVCRLQLEGWEDHGNSH 231
PVCR +L+G ++H ++
Sbjct: 239 PVCRHELQGVDNHNANY 255
>Medtr5g088720.1 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr5:38507448-38514051 | 20130731
Length = 371
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 3/69 (4%)
Query: 153 SVINAIHKVRISELHRRGEMSHCPICMEEVKVGDQACLLPCTHFYCSECILQWLRLSNNK 212
S I+A+ +RI++ H R + SHCP+C E+ ++G +A +PC H Y SECI+ WL N
Sbjct: 225 SSIDAMPTIRITQAHLRSD-SHCPVCKEKFELGSEAREMPCDHIYHSECIVPWLVQHN-- 281
Query: 213 TCPVCRLQL 221
+CPVCR++L
Sbjct: 282 SCPVCRVEL 290
>Medtr3g072630.2 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr3:32681229-32679334 | 20130731
Length = 338
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 47/72 (65%), Gaps = 3/72 (4%)
Query: 150 VQDSVINAIHKVRISELHRRGEMSHCPICMEEVKVGDQACLLPCTHFYCSECILQWLRLS 209
V + INAI V+I E E SHCP+C EE ++G +A LPC H Y S+CI+ WLRL
Sbjct: 197 VPERGINAIPTVKI-ESKNLKENSHCPVCQEEFEIGGEARELPCKHIYHSDCIVPWLRLH 255
Query: 210 NNKTCPVCRLQL 221
N +CP+CR ++
Sbjct: 256 N--SCPICRQEI 265
>Medtr5g088720.2 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr5:38513074-38514051 | 20130731
Length = 325
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 3/69 (4%)
Query: 153 SVINAIHKVRISELHRRGEMSHCPICMEEVKVGDQACLLPCTHFYCSECILQWLRLSNNK 212
S I+A+ +RI++ H R + SHCP+C E+ ++G +A +PC H Y SECI+ WL N
Sbjct: 179 SSIDAMPTIRITQAHLRSD-SHCPVCKEKFELGSEAREMPCDHIYHSECIVPWLVQHN-- 235
Query: 213 TCPVCRLQL 221
+CPVCR++L
Sbjct: 236 SCPVCRVEL 244
>Medtr5g088720.3 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr5:38509472-38514051 | 20130731
Length = 330
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 3/69 (4%)
Query: 153 SVINAIHKVRISELHRRGEMSHCPICMEEVKVGDQACLLPCTHFYCSECILQWLRLSNNK 212
S I+A+ +RI++ H R + SHCP+C E+ ++G +A +PC H Y SECI+ WL N
Sbjct: 184 SSIDAMPTIRITQAHLRSD-SHCPVCKEKFELGSEAREMPCDHIYHSECIVPWLVQHN-- 240
Query: 213 TCPVCRLQL 221
+CPVCR++L
Sbjct: 241 SCPVCRVEL 249
>Medtr1g051105.2 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr1:19922958-19919998 | 20130731
Length = 256
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 3/69 (4%)
Query: 153 SVINAIHKVRISELHRRGEMSHCPICMEEVKVGDQACLLPCTHFYCSECILQWLRLSNNK 212
S I+AI V+IS H R + HCP+C ++ ++G A +PC H + S+CI+ WL N
Sbjct: 138 SSIDAIPIVKISSRHLRSD-PHCPVCQDKFELGSDARRMPCKHMFHSDCIVPWLVQHN-- 194
Query: 213 TCPVCRLQL 221
TCPVCR +L
Sbjct: 195 TCPVCRQEL 203
>Medtr1g051105.1 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr1:19922958-19921351 | 20130731
Length = 256
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 3/69 (4%)
Query: 153 SVINAIHKVRISELHRRGEMSHCPICMEEVKVGDQACLLPCTHFYCSECILQWLRLSNNK 212
S I+AI V+IS H R + HCP+C ++ ++G A +PC H + S+CI+ WL N
Sbjct: 138 SSIDAIPIVKISSRHLRSD-PHCPVCQDKFELGSDARRMPCKHMFHSDCIVPWLVQHN-- 194
Query: 213 TCPVCRLQL 221
TCPVCR +L
Sbjct: 195 TCPVCRQEL 203
>Medtr7g074170.1 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr7:27708213-27711255 | 20130731
Length = 520
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
Query: 153 SVINAIHKVRISELHRRGEMSHCPICMEEVKVGDQACLLPCTHFYCSECILQWLRLSNNK 212
S +N + +V IS+ H++ + C IC + + +G + LPC+H Y S CIL WL+ N
Sbjct: 323 SFVNNLPRVFISKEHKKHDELVCAICKDVLALGTEVNQLPCSHLYHSHCILPWLKTRN-- 380
Query: 213 TCPVCRLQL 221
+CP+CR +L
Sbjct: 381 SCPLCRYEL 389
>Medtr7g074170.2 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr7:27708213-27711255 | 20130731
Length = 520
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
Query: 153 SVINAIHKVRISELHRRGEMSHCPICMEEVKVGDQACLLPCTHFYCSECILQWLRLSNNK 212
S +N + +V IS+ H++ + C IC + + +G + LPC+H Y S CIL WL+ N
Sbjct: 323 SFVNNLPRVFISKEHKKHDELVCAICKDVLALGTEVNQLPCSHLYHSHCILPWLKTRN-- 380
Query: 213 TCPVCRLQL 221
+CP+CR +L
Sbjct: 381 SCPLCRYEL 389
>Medtr0067s0100.2 | zinc finger, C3HC4 type (RING finger) protein |
HC | scaffold0067:36395-39112 | 20130731
Length = 280
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 45/69 (65%), Gaps = 3/69 (4%)
Query: 153 SVINAIHKVRISELHRRGEMSHCPICMEEVKVGDQACLLPCTHFYCSECILQWLRLSNNK 212
S I A+ ++I++ H + SHCPIC+E ++G +A + C H Y S+CI+ WL N
Sbjct: 169 SSIEAMPTIKITQAHLHSD-SHCPICIERFELGSKAREMACKHIYHSDCIVPWLIQHN-- 225
Query: 213 TCPVCRLQL 221
+CPVCR++L
Sbjct: 226 SCPVCRVEL 234
>Medtr0067s0100.1 | zinc finger, C3HC4 type (RING finger) protein |
HC | scaffold0067:36429-39008 | 20130731
Length = 280
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 45/69 (65%), Gaps = 3/69 (4%)
Query: 153 SVINAIHKVRISELHRRGEMSHCPICMEEVKVGDQACLLPCTHFYCSECILQWLRLSNNK 212
S I A+ ++I++ H + SHCPIC+E ++G +A + C H Y S+CI+ WL N
Sbjct: 169 SSIEAMPTIKITQAHLHSD-SHCPICIERFELGSKAREMACKHIYHSDCIVPWLIQHN-- 225
Query: 213 TCPVCRLQL 221
+CPVCR++L
Sbjct: 226 SCPVCRVEL 234
>Medtr2g097620.1 | zinc finger, C3HC4 type (RING finger) protein,
putative | HC | chr2:41698510-41696642 | 20130731
Length = 355
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 6/88 (6%)
Query: 153 SVINAIHKVRISELHRRGEMSHCPICMEEVKVGDQACLLPCTHFYCSECILQWLRLSNNK 212
+ I +I V I++ E+ HC +C E+ ++G +A +PC H Y S+CIL WL + N
Sbjct: 168 AAIESIPTVEITDSEMESEI-HCAVCKEQFELGSEARKMPCNHLYHSDCILPWLSMRN-- 224
Query: 213 TCPVCRLQLEGWEDHGNSH---SIDETA 237
+CPVCR +L ++ S IDE A
Sbjct: 225 SCPVCRHELPSDQNASESRISGQIDEEA 252
>Medtr3g068005.1 | E3 ubiquitin-protein ligase RING1-like protein |
HC | chr3:30647919-30644726 | 20130731
Length = 405
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 155 INAIHKVRISELHRRGEMSHCPICMEEVKVGDQACLLPCTHFYCSECILQWLRLSNNKTC 214
++++ + I H E SHC +CME ++G +PC H Y +CIL WL L N +C
Sbjct: 177 VDSLPTLEIDNTHLEME-SHCAVCMEAFELGTVVREMPCKHIYHPDCILPWLALHN--SC 233
Query: 215 PVCRLQLEGWEDHGNSH 231
PVCR +L D GN +
Sbjct: 234 PVCRHELPTDSDAGNGN 250
>Medtr5g080350.1 | E3 ubiquitin-protein ligase RING1-like protein |
LC | chr5:34388314-34387139 | 20130731
Length = 391
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 145 QDSVMVQDSVINAIHKVRISELHRRGEMSHCPICMEEVKVGDQACLLPCTHFYCSECILQ 204
Q + S + + + I+E H E SHC +C E ++G A +PC H Y +ECIL
Sbjct: 164 QQHLPALKSAVELLPTIEINESHMNVE-SHCAVCKEPFELGISAREMPCKHIYHNECILP 222
Query: 205 WLRLSNNKTCPVCRLQL 221
WL + N +CPVCR +L
Sbjct: 223 WLAIQN--SCPVCRHEL 237
>Medtr4g064570.1 | zinc finger (C3HC4-type RING finger) family
protein | HC | chr4:24098478-24096666 | 20130731
Length = 369
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 150 VQDSVINAIHKVRISELHRRGEMSHCPICMEEVKVGDQACLLPCTHFYCSECILQWLRLS 209
+ I ++ V I E H E+ HC +C EE ++ +A LPC H Y S+CIL WL +
Sbjct: 157 ASKAAIESMPTVEICEEHVSCEL-HCAVCKEEFELHAEARELPCKHLYHSDCILPWLTVR 215
Query: 210 NNKTCPVCRLQL 221
N +CPVCR +L
Sbjct: 216 N--SCPVCRHEL 225
>Medtr2g078440.1 | zinc finger, C3HC4 type (RING finger) protein |
LC | chr2:32685859-32684289 | 20130731
Length = 327
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 8/99 (8%)
Query: 147 SVMVQDSVINAIHKVRISELHRRGEMSHCPICMEEVKVGDQACLLPCTHFYCSECILQWL 206
S + + I + K ++ + E+ C IC EE K+ ++ +L C H Y +CI++WL
Sbjct: 225 STSLPEKTIESQLKTKLYSPYDSQEIDACMICQEEFKIQEKIGILQCKHGYHVDCIIKWL 284
Query: 207 RLSNNKTCPVCRLQLEGWEDHGNSHSIDETASAWDFFGH 245
+ N CP+C+L+ + SH I +DFF H
Sbjct: 285 MIKN--ICPICKLEALTDGEKNKSHGI------YDFFMH 315
>Medtr6g032960.1 | C3HC4-type RING zinc finger protein | HC |
chr6:10270809-10271792 | 20130731
Length = 327
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 35/51 (68%), Gaps = 2/51 (3%)
Query: 171 EMSHCPICMEEVKVGDQACLLPCTHFYCSECILQWLRLSNNKTCPVCRLQL 221
E C IC+E+V++GD A +PC H + +CI+ WL+L + +CPVCR Q+
Sbjct: 232 EKLQCTICLEDVEIGDIAKEMPCKHKFHGDCIVSWLKL--HSSCPVCRFQM 280
>Medtr6g079660.2 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr6:29164021-29170847 | 20130731
Length = 374
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 9/70 (12%)
Query: 157 AIHKVRISELHRRGEM-----SHCPICMEEVKVGDQACLLPCTHFYCSECILQWLRLSNN 211
A+ K+ + E+ GE+ S C +C + +G++A +PC H Y +CIL WL L N
Sbjct: 214 AVEKLPVIEV--TGELLESDSSQCAVCKDTFALGEKAKQMPCKHIYHDDCILPWLELHN- 270
Query: 212 KTCPVCRLQL 221
+CPVCR +L
Sbjct: 271 -SCPVCRFEL 279
>Medtr6g079660.1 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr6:29164021-29171855 | 20130731
Length = 374
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 9/70 (12%)
Query: 157 AIHKVRISELHRRGEM-----SHCPICMEEVKVGDQACLLPCTHFYCSECILQWLRLSNN 211
A+ K+ + E+ GE+ S C +C + +G++A +PC H Y +CIL WL L N
Sbjct: 214 AVEKLPVIEV--TGELLESDSSQCAVCKDTFALGEKAKQMPCKHIYHDDCILPWLELHN- 270
Query: 212 KTCPVCRLQL 221
+CPVCR +L
Sbjct: 271 -SCPVCRFEL 279
>Medtr4g106960.6 | RING-finger ubiquitin ligase | HC |
chr4:43964225-43959467 | 20130731
Length = 350
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 4/67 (5%)
Query: 152 DSVINAIHKVRISELHRRGEMSHCPICMEEVKVGDQACLLPCTHFYCSECILQWLRLSNN 211
+++I + K R+ + + S CPIC+EE +VG++ LPC H + ECI +WLRL N
Sbjct: 157 EALIQELPKFRLKAVPT--DCSECPICLEEFRVGNEVRGLPCAHNFHVECIDEWLRL--N 212
Query: 212 KTCPVCR 218
CP CR
Sbjct: 213 VKCPRCR 219
>Medtr8g037150.1 | E3 ubiquitin ligase BIG brother-like protein | HC
| chr8:13713285-13707137 | 20130731
Length = 247
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 164 SELHRRGEMSHCPICMEEVKVGDQACLLPCTHFYCSECILQWLRLSNNKTCPVCRLQLEG 223
S R+ C +C + GDQ LPC+H Y ECI +WL + NK CPVC ++ G
Sbjct: 185 SLFKRKNSGKRCVVCQMTYRRGDQQMKLPCSHVYHGECITKWLSI--NKKCPVCNTEVFG 242
Query: 224 WE 225
E
Sbjct: 243 EE 244
>Medtr3g025510.1 | anaphase-promoting complex subunit 11 RING-H2
finger protein | LC | chr3:7810014-7810478 | 20130731
Length = 154
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 31/44 (70%), Gaps = 2/44 (4%)
Query: 175 CPICMEEVKVGDQACLLPCTHFYCSECILQWLRLSNNKTCPVCR 218
C IC+ E+ VG +A LPC+H Y ECI++WL SN TCP+CR
Sbjct: 105 CSICLVELSVGSKAIRLPCSHIYHDECIMKWLDRSN--TCPMCR 146
>Medtr4g106960.2 | RING-finger ubiquitin ligase | HC |
chr4:43964225-43959467 | 20130731
Length = 323
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 4/67 (5%)
Query: 152 DSVINAIHKVRISELHRRGEMSHCPICMEEVKVGDQACLLPCTHFYCSECILQWLRLSNN 211
+++I + K R+ + + S CPIC+EE +VG++ LPC H + ECI +WLRL N
Sbjct: 157 EALIQELPKFRLKAVPT--DCSECPICLEEFRVGNEVRGLPCAHNFHVECIDEWLRL--N 212
Query: 212 KTCPVCR 218
CP CR
Sbjct: 213 VKCPRCR 219
>Medtr4g106960.4 | RING-finger ubiquitin ligase | HC |
chr4:43964225-43958809 | 20130731
Length = 323
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 4/67 (5%)
Query: 152 DSVINAIHKVRISELHRRGEMSHCPICMEEVKVGDQACLLPCTHFYCSECILQWLRLSNN 211
+++I + K R+ + + S CPIC+EE +VG++ LPC H + ECI +WLRL N
Sbjct: 157 EALIQELPKFRLKAVPT--DCSECPICLEEFRVGNEVRGLPCAHNFHVECIDEWLRL--N 212
Query: 212 KTCPVCR 218
CP CR
Sbjct: 213 VKCPRCR 219
>Medtr4g106960.5 | RING-finger ubiquitin ligase | HC |
chr4:43964225-43959467 | 20130731
Length = 407
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 4/67 (5%)
Query: 152 DSVINAIHKVRISELHRRGEMSHCPICMEEVKVGDQACLLPCTHFYCSECILQWLRLSNN 211
+++I + K R+ + + S CPIC+EE +VG++ LPC H + ECI +WLRL N
Sbjct: 214 EALIQELPKFRLKAVPT--DCSECPICLEEFRVGNEVRGLPCAHNFHVECIDEWLRL--N 269
Query: 212 KTCPVCR 218
CP CR
Sbjct: 270 VKCPRCR 276
>Medtr4g106960.1 | RING-finger ubiquitin ligase | HC |
chr4:43964225-43959467 | 20130731
Length = 380
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 4/67 (5%)
Query: 152 DSVINAIHKVRISELHRRGEMSHCPICMEEVKVGDQACLLPCTHFYCSECILQWLRLSNN 211
+++I + K R+ + + S CPIC+EE +VG++ LPC H + ECI +WLRL N
Sbjct: 214 EALIQELPKFRLKAVPT--DCSECPICLEEFRVGNEVRGLPCAHNFHVECIDEWLRL--N 269
Query: 212 KTCPVCR 218
CP CR
Sbjct: 270 VKCPRCR 276
>Medtr4g106960.3 | RING-finger ubiquitin ligase | HC |
chr4:43964225-43958809 | 20130731
Length = 380
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 4/67 (5%)
Query: 152 DSVINAIHKVRISELHRRGEMSHCPICMEEVKVGDQACLLPCTHFYCSECILQWLRLSNN 211
+++I + K R+ + + S CPIC+EE +VG++ LPC H + ECI +WLRL N
Sbjct: 214 EALIQELPKFRLKAVPT--DCSECPICLEEFRVGNEVRGLPCAHNFHVECIDEWLRL--N 269
Query: 212 KTCPVCR 218
CP CR
Sbjct: 270 VKCPRCR 276
>Medtr2g084630.1 | DNA/RNA helicase | HC | chr2:35865804-35875314 |
20130731
Length = 1022
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 150 VQDSVINAIHKVRISELHRRGEMSHCPICMEEVKVGDQACLLPCTHFYCSECILQWLRLS 209
V+D++ A + + EL R+GE CPIC+E + + L PC H C EC+L R S
Sbjct: 763 VKDALSRAYVQEVVEEL-RKGEQGECPICLEAF---EDSVLTPCAHRLCRECLLASWRNS 818
Query: 210 NNKTCPVCR 218
+ CPVCR
Sbjct: 819 TSGLCPVCR 827
>Medtr2g084630.2 | DNA/RNA helicase | HC | chr2:35865773-35875405 |
20130731
Length = 1025
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 150 VQDSVINAIHKVRISELHRRGEMSHCPICMEEVKVGDQACLLPCTHFYCSECILQWLRLS 209
V+D++ A + + EL R+GE CPIC+E + + L PC H C EC+L R S
Sbjct: 757 VKDALSRAYVQEVVEEL-RKGEQGECPICLEAF---EDSVLTPCAHRLCRECLLASWRNS 812
Query: 210 NNKTCPVCR 218
+ CPVCR
Sbjct: 813 TSGLCPVCR 821
>Medtr6g016350.1 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr6:6040819-6042570 | 20130731
Length = 379
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 175 CPICMEEVKVGDQACLLPCTHFYCSECILQWLRLSNNKTCPVCRLQL 221
C +C +EV V ++ LPC+H Y +CIL WL + N TCPVCR +L
Sbjct: 311 CAVCKDEVTVEEKVGKLPCSHCYHGDCILPWLNIRN--TCPVCRYEL 355
>Medtr3g067995.1 | RING zinc finger protein, putative | HC |
chr3:30631942-30625706 | 20130731
Length = 273
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 175 CPICMEEVKVGDQACLLPCTHFYCSECILQWLRLSNNKTCPVCRLQL-EGWEDHGNSHSI 233
C +C+E+V VGD LPC H + + CI WLR TCPVC+ + GW D G++
Sbjct: 213 CSVCLEQVNVGDVLRSLPCLHQFHASCIDPWLR--QQGTCPVCKFRAGSGWNDSGHNDIA 270
Query: 234 D 234
D
Sbjct: 271 D 271
>Medtr5g041310.1 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr5:18157114-18158100 | 20130731
Length = 222
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 6/67 (8%)
Query: 155 INAIHKVRISELHRRGEMSHCPICMEEVKVGDQACLLPCTHFYCSECILQWLRLSNNKTC 214
I A+ K+ I E G+ C +C+EE +VG +PC H + +CI +WL + + +C
Sbjct: 99 IEAMDKIEIEE----GDGGECVVCLEEFEVGGVVKEMPCKHRFHGKCIEKWLGI--HGSC 152
Query: 215 PVCRLQL 221
PVCR Q+
Sbjct: 153 PVCRYQM 159
>Medtr1g114320.2 | E3 ubiquitin-protein ligase RING1-like protein |
HC | chr1:51590758-51593219 | 20130731
Length = 315
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 154 VINAIHKVRISELHRRGEMSHCPICMEEVKVGDQACLLPCTHFYCSECILQWLRLSNNKT 213
+ + V + + E++ C +C +E + G Q +PC H Y +C+L WL L N +
Sbjct: 173 AVKNLPTVTVDDALLSSELNQCAVCQDEFEKGMQVKQMPCKHVYHDDCLLPWLELHN--S 230
Query: 214 CPVCRLQL 221
CPVCR +L
Sbjct: 231 CPVCRHEL 238
>Medtr1g114320.3 | E3 ubiquitin-protein ligase RING1-like protein |
HC | chr1:51590758-51593164 | 20130731
Length = 315
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 154 VINAIHKVRISELHRRGEMSHCPICMEEVKVGDQACLLPCTHFYCSECILQWLRLSNNKT 213
+ + V + + E++ C +C +E + G Q +PC H Y +C+L WL L N +
Sbjct: 173 AVKNLPTVTVDDALLSSELNQCAVCQDEFEKGMQVKQMPCKHVYHDDCLLPWLELHN--S 230
Query: 214 CPVCRLQL 221
CPVCR +L
Sbjct: 231 CPVCRHEL 238
>Medtr1g114320.1 | E3 ubiquitin-protein ligase RING1-like protein |
HC | chr1:51590758-51593266 | 20130731
Length = 315
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 154 VINAIHKVRISELHRRGEMSHCPICMEEVKVGDQACLLPCTHFYCSECILQWLRLSNNKT 213
+ + V + + E++ C +C +E + G Q +PC H Y +C+L WL L N +
Sbjct: 173 AVKNLPTVTVDDALLSSELNQCAVCQDEFEKGMQVKQMPCKHVYHDDCLLPWLELHN--S 230
Query: 214 CPVCRLQL 221
CPVCR +L
Sbjct: 231 CPVCRHEL 238
>Medtr1g114320.4 | E3 ubiquitin-protein ligase RING1-like protein |
HC | chr1:51590758-51593164 | 20130731
Length = 315
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 154 VINAIHKVRISELHRRGEMSHCPICMEEVKVGDQACLLPCTHFYCSECILQWLRLSNNKT 213
+ + V + + E++ C +C +E + G Q +PC H Y +C+L WL L N +
Sbjct: 173 AVKNLPTVTVDDALLSSELNQCAVCQDEFEKGMQVKQMPCKHVYHDDCLLPWLELHN--S 230
Query: 214 CPVCRLQL 221
CPVCR +L
Sbjct: 231 CPVCRHEL 238
>Medtr3g083480.2 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr3:37658587-37660828 | 20130731
Length = 356
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Query: 171 EMSHCPICMEEVKVGDQACLLPCTHFYCSECILQWLRLSNNKTCPVCRLQL 221
E C +C+++ +VG +A +PC H + S CIL WL L + +CPVCR QL
Sbjct: 233 ENLQCSVCLDDFEVGSEAKEMPCKHRFHSACILPWLEL--HSSCPVCRSQL 281
>Medtr3g083480.1 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr3:37658323-37660828 | 20130731
Length = 356
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Query: 171 EMSHCPICMEEVKVGDQACLLPCTHFYCSECILQWLRLSNNKTCPVCRLQL 221
E C +C+++ +VG +A +PC H + S CIL WL L + +CPVCR QL
Sbjct: 233 ENLQCSVCLDDFEVGSEAKEMPCKHRFHSACILPWLEL--HSSCPVCRSQL 281
>Medtr1g114620.1 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr1:51742171-51743858 | 20130731
Length = 334
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 153 SVINAIHKVRISELHRRGEMSHCPICMEEVKVGDQACLLPCTHFYCSECILQWLRLSNNK 212
S + A+ V+I+ E+ C +C E + VG+ A LPC H Y +CI+ W LS
Sbjct: 245 SAVEALPTVKIA---VGSEVVACAVCKEMLGVGEMAKRLPCGHEYHGDCIVPW--LSTRN 299
Query: 213 TCPVCRLQL 221
+CP+CR +L
Sbjct: 300 SCPICRFEL 308
>Medtr1g114620.2 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr1:51742171-51743858 | 20130731
Length = 334
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 153 SVINAIHKVRISELHRRGEMSHCPICMEEVKVGDQACLLPCTHFYCSECILQWLRLSNNK 212
S + A+ V+I+ E+ C +C E + VG+ A LPC H Y +CI+ W LS
Sbjct: 245 SAVEALPTVKIA---VGSEVVACAVCKEMLGVGEMAKRLPCGHEYHGDCIVPW--LSTRN 299
Query: 213 TCPVCRLQL 221
+CP+CR +L
Sbjct: 300 SCPICRFEL 308
>Medtr4g110100.1 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr4:45852019-45853843 | 20130731
Length = 423
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 175 CPICMEEVKVGDQACLLPCTHFYCSECILQWLRLSNNKTCPVCRLQL 221
C +C +E V ++ LLPC+H Y +CI+ WL + N TCPVCR +
Sbjct: 360 CAVCKDEFAVVEEVKLLPCSHRYHGDCIMPWLGIRN--TCPVCRCEF 404
>Medtr5g041330.1 | anaphase-promoting complex subunit 11 RING-H2
finger protein | HC | chr5:18160913-18161896 | 20130731
Length = 218
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 155 INAIHKVRISELHRRGEMSHCPICMEEVKVGDQACLLPCTHFYCSECILQWLRLSNNKTC 214
I A+ K+ I E G+ C +C+EE +VG +PC H + +CI +WL + + +C
Sbjct: 89 IEAMEKIEIEE----GDGGECVVCLEEFEVGGVVKEMPCKHRFHGKCIEKWLGI--HGSC 142
Query: 215 PVCRLQL 221
PVCR +
Sbjct: 143 PVCRYHM 149
>Medtr4g064550.1 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr4:24087777-24085465 | 20130731
Length = 277
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 175 CPICMEEVKVGDQACLLPCTHFYCSECILQWLRLSNNKTCPVCRLQL-EGW 224
C IC+++V+ G+ LPC H + + CI QWLR +TCPVC+ ++ GW
Sbjct: 215 CAICLDQVQRGELVRSLPCLHQFHASCIDQWLR--RKRTCPVCKFKIGAGW 263
>Medtr3g088080.1 | zinc finger, C3HC4 type (RING finger) protein |
LC | chr3:39930068-39929802 | 20130731
Length = 88
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 155 INAIHKVRISELHRRGEMSHCPICMEEVKVGDQACLLPCTHFYCSECILQWLRLSNNKTC 214
I ++ KV++ + M C IC E +G + +PC H Y ECI+QWL S+ C
Sbjct: 21 IESLEKVKVEDCD---TMKMCVICQVEFNLGMEVTKMPCDHLYHHECIVQWLETSH--MC 75
Query: 215 PVCR 218
P+CR
Sbjct: 76 PMCR 79
>Medtr4g064560.2 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr4:24093588-24088996 | 20130731
Length = 271
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 175 CPICMEEVKVGDQACLLPCTHFYCSECILQWLRLSNNKTCPVCRLQL-EGW 224
C IC+++V+ G+ LPC H + + CI QWLR +TCPVC+ ++ GW
Sbjct: 209 CAICLDQVQRGELVRSLPCLHQFHASCIDQWLR--RKRTCPVCKFKMGAGW 257
>Medtr4g064560.1 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr4:24093790-24089151 | 20130731
Length = 271
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 175 CPICMEEVKVGDQACLLPCTHFYCSECILQWLRLSNNKTCPVCRLQL-EGW 224
C IC+++V+ G+ LPC H + + CI QWLR +TCPVC+ ++ GW
Sbjct: 209 CAICLDQVQRGELVRSLPCLHQFHASCIDQWLR--RKRTCPVCKFKMGAGW 257
>Medtr3g025550.1 | anaphase-promoting complex subunit 11 RING-H2
finger protein | LC | chr3:7819459-7819893 | 20130731
Length = 64
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 171 EMSHCPICMEEVKVGDQACLLPCTHFYCSECILQWLRLSNNKTCPVCR 218
E C IC+ E+ VG QA PC+H Y CI++WL SN TCP+CR
Sbjct: 13 EAMMCSICLAELLVGSQATRFPCSHLYDEGCIMKWLGRSN--TCPMCR 58
>Medtr3g067985.1 | C3HC4-type RING zinc finger protein | LC |
chr3:30620740-30618722 | 20130731
Length = 179
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 170 GEMSHCPICMEEVKVGDQACLLPCTHFYCSECILQWLRLSNNKTCPVCRLQL-EGWEDHG 228
G+ C +C+E+V VGD LP H + + CI WLR TCPVC+ + GW D G
Sbjct: 114 GDELTCSVCLEQVNVGDVLRSLPFLHQFHASCIDPWLR--QQGTCPVCKFRAGSGWNDSG 171
Query: 229 NSHSID 234
++ D
Sbjct: 172 HNDIAD 177