Miyakogusa Predicted Gene
- Lj0g3v0359189.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0359189.2 Non Characterized Hit- tr|I3T8I3|I3T8I3_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,99.16,0,HLH,Helix-loop-helix domain; HLH, helix-loop-helix
DNA-binding domain,Helix-loop-helix domain; coile,CUFF.24722.2
(238 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g081370.1 | BHLH domain class transcription factor | HC | ... 375 e-104
Medtr2g082640.1 | BHLH domain class transcription factor | HC | ... 318 2e-87
Medtr4g081370.2 | BHLH domain class transcription factor | HC | ... 316 2e-86
Medtr2g089000.1 | BHLH domain class transcription factor | HC | ... 205 4e-53
Medtr1g043430.1 | BHLH domain class transcription factor | HC | ... 185 3e-47
Medtr4g075480.2 | transcription factor | HC | chr4:28837847-2884... 91 1e-18
Medtr4g075480.1 | transcription factor | HC | chr4:28837847-2884... 91 1e-18
Medtr4g075480.3 | transcription factor | HC | chr4:28837847-2884... 90 1e-18
Medtr1g032600.1 | transcription factor | HC | chr1:11621022-1162... 83 2e-16
Medtr1g032600.2 | transcription factor | HC | chr1:11621022-1162... 83 2e-16
Medtr4g108360.1 | BHLH transcription factor | HC | chr4:44950290... 65 7e-11
Medtr4g108360.2 | BHLH transcription factor | HC | chr4:44950596... 49 3e-06
>Medtr4g081370.1 | BHLH domain class transcription factor | HC |
chr4:31541350-31537381 | 20130731
Length = 237
Score = 375 bits (963), Expect = e-104, Method: Compositional matrix adjust.
Identities = 184/238 (77%), Positives = 196/238 (82%), Gaps = 1/238 (0%)
Query: 1 MVSRENTNWLFDYGLIDDIPAPEVTFTVPPSGFPWPSSQPLNSSSNVVGVEIDGSLGDSD 60
MVSRENTNW+ DYG DDIP P+ TF +P S F WP+ P N SSNV E+DGSLGDSD
Sbjct: 1 MVSRENTNWINDYGFYDDIPVPDSTFALPSSAFTWPTQPPFNLSSNV-SAEVDGSLGDSD 59
Query: 61 SLKEPGSKKRVRSESCSATSSKACREKLRRDKLNDKFVELGSILEPGRPPKTDKAAILID 120
LKE GSKKRVRSESC+ATSSKACREKLRRD+LNDKF+ELGSILEPGRP KTDKAAILID
Sbjct: 60 GLKESGSKKRVRSESCAATSSKACREKLRRDRLNDKFIELGSILEPGRPAKTDKAAILID 119
Query: 121 AVRMVTQLRGEAQKMKDTNMGLQEKIKELKTEKNELRDEKQRLKTEKERLEQQLKSMNAQ 180
AVRMVTQLRGEAQK+KD N GLQEKIKELK EKNELRDEKQRLK EKE+LEQQLKSMNA
Sbjct: 120 AVRMVTQLRGEAQKLKDANSGLQEKIKELKVEKNELRDEKQRLKAEKEKLEQQLKSMNAP 179
Query: 181 PSFMXXXXXXXXXXXXXXXXHGNKLVPFISYPGVAMWQFLPPAARDTSQDHELRPPVA 238
PSF+ HGNKLVPFISYPGVAMWQF+PPAA DTSQDH LRPPVA
Sbjct: 180 PSFLPTPTALPAAFAAQGQAHGNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA 237
>Medtr2g082640.1 | BHLH domain class transcription factor | HC |
chr2:34669163-34671763 | 20130731
Length = 230
Score = 318 bits (816), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 167/240 (69%), Positives = 185/240 (77%), Gaps = 12/240 (5%)
Query: 1 MVSRENTNWLFDYGLIDDIPAP-EVTFTVPPSGFPWPSSQPLNSSSNVVGVEID-GSLGD 58
MVS ENTNWLFDY LID+IP + +F F WP N G+E+D SL D
Sbjct: 1 MVSPENTNWLFDYPLIDEIPVSVDGSF-----AFTWPPPHLSNG-----GIEMDDSSLVD 50
Query: 59 SDSLKEPGSKKRVRSESCSATSSKACREKLRRDKLNDKFVELGSILEPGRPPKTDKAAIL 118
SD +KEPGSKKR RS+SC+ +SSKACREKLRRD+LNDKFVELGSILEPGRPPKTDKAAIL
Sbjct: 51 SDGIKEPGSKKRGRSDSCAPSSSKACREKLRRDRLNDKFVELGSILEPGRPPKTDKAAIL 110
Query: 119 IDAVRMVTQLRGEAQKMKDTNMGLQEKIKELKTEKNELRDEKQRLKTEKERLEQQLKSMN 178
IDAVRMVTQLRGEAQK+KD+N GLQEKIKELK EKNELRDEKQRLK EKE+LEQQ+KSMN
Sbjct: 111 IDAVRMVTQLRGEAQKLKDSNSGLQEKIKELKVEKNELRDEKQRLKAEKEKLEQQVKSMN 170
Query: 179 AQPSFMXXXXXXXXXXXXXXXXHGNKLVPFISYPGVAMWQFLPPAARDTSQDHELRPPVA 238
QP F+ NKL+PF+SYPGVAMWQF+PPAA DTSQDH LRPPVA
Sbjct: 171 TQPGFLTHPPAIPAAFAHQGQAPSNKLMPFMSYPGVAMWQFMPPAAVDTSQDHVLRPPVA 230
>Medtr4g081370.2 | BHLH domain class transcription factor | HC |
chr4:31541177-31537807 | 20130731
Length = 193
Score = 316 bits (809), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 155/191 (81%), Positives = 164/191 (85%)
Query: 48 VGVEIDGSLGDSDSLKEPGSKKRVRSESCSATSSKACREKLRRDKLNDKFVELGSILEPG 107
+G E+DGSLGDSD LKE GSKKRVRSESC+ATSSKACREKLRRD+LNDKF+ELGSILEPG
Sbjct: 3 MGAEVDGSLGDSDGLKESGSKKRVRSESCAATSSKACREKLRRDRLNDKFIELGSILEPG 62
Query: 108 RPPKTDKAAILIDAVRMVTQLRGEAQKMKDTNMGLQEKIKELKTEKNELRDEKQRLKTEK 167
RP KTDKAAILIDAVRMVTQLRGEAQK+KD N GLQEKIKELK EKNELRDEKQRLK EK
Sbjct: 63 RPAKTDKAAILIDAVRMVTQLRGEAQKLKDANSGLQEKIKELKVEKNELRDEKQRLKAEK 122
Query: 168 ERLEQQLKSMNAQPSFMXXXXXXXXXXXXXXXXHGNKLVPFISYPGVAMWQFLPPAARDT 227
E+LEQQLKSMNA PSF+ HGNKLVPFISYPGVAMWQF+PPAA DT
Sbjct: 123 EKLEQQLKSMNAPPSFLPTPTALPAAFAAQGQAHGNKLVPFISYPGVAMWQFMPPAAVDT 182
Query: 228 SQDHELRPPVA 238
SQDH LRPPVA
Sbjct: 183 SQDHVLRPPVA 193
>Medtr2g089000.1 | BHLH domain class transcription factor | HC |
chr2:37541705-37539428 | 20130731
Length = 260
Score = 205 bits (521), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 121/257 (47%), Positives = 159/257 (61%), Gaps = 35/257 (13%)
Query: 9 WLFDYGLIDDIPAPEVTF-----TVPPSGFPW---PSSQP--LNSSSNVVGVEIDGSLGD 58
WL+DYG DDI F + S F W P SQ +N S+ + +E+D SL
Sbjct: 12 WLYDYG-YDDISISAADFMASDSSAAASTFTWMPQPQSQTQIINPPSSHMSLEMDYSLDS 70
Query: 59 S-----------------DSLKEPGSKKRVRSESCSATSSKACREKLRRDKLNDKFVELG 101
+ ++ E G KR+R+ES A+SSKA REK+RRDKLND+F+EL
Sbjct: 71 TVMESNPSKRMEMEYSLDSTVLENGPSKRLRTESY-ASSSKAGREKVRRDKLNDRFMELS 129
Query: 102 SILEPGRPPKTDKAAILIDAVRMVTQLRGEAQKMKDTNMGLQEKIKELKTEKNELRDEKQ 161
S+LEP PKTDK ++L DAVR+VTQLR EA+++K+ N L+EK+KELK EK ELRDEK
Sbjct: 130 SVLEPDTLPKTDKVSLLNDAVRVVTQLRNEAERLKERNDELREKVKELKAEKKELRDEKN 189
Query: 162 RLKTEKERLEQQLKSMNAQPSFMXXXXXXXXXXXXXXXXHGNKLVPFISYPGVAMWQFLP 221
+LK +KE+LEQQ+K + Q +F+ +KL+PFI YPG++MWQF+
Sbjct: 190 KLKLDKEKLEQQVKLASVQSNFLSNAMAAKGQTA------NHKLMPFIGYPGISMWQFMS 243
Query: 222 PAARDTSQDHELRPPVA 238
PA DTSQDH LRPPVA
Sbjct: 244 PATVDTSQDHLLRPPVA 260
>Medtr1g043430.1 | BHLH domain class transcription factor | HC |
chr1:16308113-16312292 | 20130731
Length = 246
Score = 185 bits (470), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 108/250 (43%), Positives = 151/250 (60%), Gaps = 27/250 (10%)
Query: 5 ENTNWLFDYGLIDDIPAPEVTFTVPPSGFPWPSSQP-----LNSSSNVVGVEIDGSLGDS 59
ENT++L G P PP+ F W +S P + SSNVV + + +
Sbjct: 8 ENTDYLDFLGDYSPFIDPS-----PPTHFLWSNSNPSVSTEFDISSNVVACQEENTRKSV 62
Query: 60 DS----------LKEPGSKKRVRSESCSATSSKACREKLRRDKLNDKFVELGSILEPGRP 109
+ +E ++KR R+ESC +KACREKLRR+KLN++F +L ++LEPGRP
Sbjct: 63 STETDIPSGAVVCQEENTRKRGRTESCYKAGTKACREKLRREKLNERFCDLSAVLEPGRP 122
Query: 110 PKTDKAAILIDAVRMVTQLRGEAQKMKDTNMGLQEKIKELKTEKNELRDEKQRLKTEKER 169
+TDK AIL DA+R+++QL+ EAQ++K++N L E+IK LK EKNELR+EK LK +KE+
Sbjct: 123 VRTDKPAILDDAIRVLSQLKTEAQELKESNEKLLEEIKCLKAEKNELREEKLVLKADKEK 182
Query: 170 LEQQLKSMNAQPS-FMXXXXXXXXXXXXXXXXHGNKLVPFISYPGVAMWQFLPPAARDTS 228
+E+QLKSM P+ FM NK+ + +Y + MW +LP +ARDTS
Sbjct: 183 IEKQLKSMPVSPAGFMPPPPMAAYQASV------NKMAVYPNYGYIPMWHYLPQSARDTS 236
Query: 229 QDHELRPPVA 238
QDHELRPP A
Sbjct: 237 QDHELRPPAA 246
>Medtr4g075480.2 | transcription factor | HC |
chr4:28837847-28840939 | 20130731
Length = 282
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/96 (50%), Positives = 67/96 (69%), Gaps = 1/96 (1%)
Query: 80 SSKACREKLRRDKLNDKFVELGSILEPGRPPKTDKAAILIDAVRMVTQLRGEAQKMKDTN 139
+ KA REKLRRD+LN++F+ELG+IL+P RP K DKA IL D V+++ L + K+KD
Sbjct: 9 TQKADREKLRRDRLNEQFLELGNILDPDRP-KNDKATILGDTVQLLKDLSSQVSKLKDEY 67
Query: 140 MGLQEKIKELKTEKNELRDEKQRLKTEKERLEQQLK 175
L E+ +EL EKN+LR+EK LK++ E L Q +
Sbjct: 68 TMLNEESRELSQEKNDLREEKASLKSDIENLNNQYQ 103
>Medtr4g075480.1 | transcription factor | HC |
chr4:28837847-28840939 | 20130731
Length = 282
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/96 (50%), Positives = 67/96 (69%), Gaps = 1/96 (1%)
Query: 80 SSKACREKLRRDKLNDKFVELGSILEPGRPPKTDKAAILIDAVRMVTQLRGEAQKMKDTN 139
+ KA REKLRRD+LN++F+ELG+IL+P RP K DKA IL D V+++ L + K+KD
Sbjct: 9 TQKADREKLRRDRLNEQFLELGNILDPDRP-KNDKATILGDTVQLLKDLSSQVSKLKDEY 67
Query: 140 MGLQEKIKELKTEKNELRDEKQRLKTEKERLEQQLK 175
L E+ +EL EKN+LR+EK LK++ E L Q +
Sbjct: 68 TMLNEESRELSQEKNDLREEKASLKSDIENLNNQYQ 103
>Medtr4g075480.3 | transcription factor | HC |
chr4:28837847-28840939 | 20130731
Length = 310
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/96 (50%), Positives = 67/96 (69%), Gaps = 1/96 (1%)
Query: 80 SSKACREKLRRDKLNDKFVELGSILEPGRPPKTDKAAILIDAVRMVTQLRGEAQKMKDTN 139
+ KA REKLRRD+LN++F+ELG+IL+P RP K DKA IL D V+++ L + K+KD
Sbjct: 37 TQKADREKLRRDRLNEQFLELGNILDPDRP-KNDKATILGDTVQLLKDLSSQVSKLKDEY 95
Query: 140 MGLQEKIKELKTEKNELRDEKQRLKTEKERLEQQLK 175
L E+ +EL EKN+LR+EK LK++ E L Q +
Sbjct: 96 TMLNEESRELSQEKNDLREEKASLKSDIENLNNQYQ 131
>Medtr1g032600.1 | transcription factor | HC |
chr1:11621022-11623661 | 20130731
Length = 355
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 81/150 (54%), Gaps = 17/150 (11%)
Query: 35 W-PSSQPLNSSSNVVGVEIDGSLGDSDSLKEPGSKKRVRSESCSATS--------SKACR 85
W P PLN+S SL DS P + +R RSE KA R
Sbjct: 33 WKPPPPPLNTSKT-------PSLTAEDSPPLPITNRRERSEMVEVGDPTVVARKVQKADR 85
Query: 86 EKLRRDKLNDKFVELGSILEPGRPPKTDKAAILIDAVRMVTQLRGEAQKMKDTNMGLQEK 145
EK+RRD+LND F +LG++++P RP + DKA I+ + ++++ + E ++K + L E+
Sbjct: 86 EKIRRDRLNDHFHQLGTVIDPDRP-RNDKATIITETIQVLKDITSEVDRLKTEHKSLSEE 144
Query: 146 IKELKTEKNELRDEKQRLKTEKERLEQQLK 175
+EL EK ELR+EK LK++ E L Q +
Sbjct: 145 SRELIQEKTELREEKASLKSDIENLNSQYQ 174
>Medtr1g032600.2 | transcription factor | HC |
chr1:11621022-11623661 | 20130731
Length = 355
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 81/150 (54%), Gaps = 17/150 (11%)
Query: 35 W-PSSQPLNSSSNVVGVEIDGSLGDSDSLKEPGSKKRVRSESCSATS--------SKACR 85
W P PLN+S SL DS P + +R RSE KA R
Sbjct: 33 WKPPPPPLNTSKT-------PSLTAEDSPPLPITNRRERSEMVEVGDPTVVARKVQKADR 85
Query: 86 EKLRRDKLNDKFVELGSILEPGRPPKTDKAAILIDAVRMVTQLRGEAQKMKDTNMGLQEK 145
EK+RRD+LND F +LG++++P RP + DKA I+ + ++++ + E ++K + L E+
Sbjct: 86 EKIRRDRLNDHFHQLGTVIDPDRP-RNDKATIITETIQVLKDITSEVDRLKTEHKSLSEE 144
Query: 146 IKELKTEKNELRDEKQRLKTEKERLEQQLK 175
+EL EK ELR+EK LK++ E L Q +
Sbjct: 145 SRELIQEKTELREEKASLKSDIENLNSQYQ 174
>Medtr4g108360.1 | BHLH transcription factor | HC |
chr4:44950290-44948517 | 20130731
Length = 246
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 77/140 (55%), Gaps = 10/140 (7%)
Query: 41 LNSSSNVVGVEIDGSLGDSDSLKEPGSKKRVRSESCSATSSKACREKLRRDKLNDKFVEL 100
+ S S +E + D ++K+ KR+ KA REK++R+ LN+ F++L
Sbjct: 23 MGSESVAPMIEPSNNRSDPGTMKQGKVPKRIH---------KAEREKMKREHLNELFLDL 73
Query: 101 GSILEPGRPPKTDKAAILIDAVRMVTQLRGEAQKMKDTNMGLQEKIKELKTEKNELRDEK 160
+ L+ P KA+ILI+A R++ L + Q +K N+ L + + EKNEL++E
Sbjct: 74 ANALDLSEP-NNGKASILIEASRLLKDLLCQIQSLKKENVSLLSESHYVTMEKNELKEEN 132
Query: 161 QRLKTEKERLEQQLKSMNAQ 180
L+T+ E+L+ ++++ AQ
Sbjct: 133 SSLETQIEKLQGEIQARIAQ 152
>Medtr4g108360.2 | BHLH transcription factor | HC |
chr4:44950596-44948167 | 20130731
Length = 193
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 44/71 (61%)
Query: 110 PKTDKAAILIDAVRMVTQLRGEAQKMKDTNMGLQEKIKELKTEKNELRDEKQRLKTEKER 169
P KA+ILI+A R++ L + Q +K N+ L + + EKNEL++E L+T+ E+
Sbjct: 29 PNNGKASILIEASRLLKDLLCQIQSLKKENVSLLSESHYVTMEKNELKEENSSLETQIEK 88
Query: 170 LEQQLKSMNAQ 180
L+ ++++ AQ
Sbjct: 89 LQGEIQARIAQ 99