Miyakogusa Predicted Gene
- Lj0g3v0359129.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0359129.1 Non Characterized Hit- tr|I1LKD6|I1LKD6_SOYBN
Uncharacterized protein OS=Glycine max PE=3
SV=1,92.23,0,Acyl-CoA_dh_1,Acyl-CoA oxidase/dehydrogenase, type 1;
Acyl-CoA_dh_N,Acyl-CoA dehydrogenase, N-termin,CUFF.24747.1
(413 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g060480.1 | acyl-CoA dehydrogenase | HC | chr4:22246164-22... 763 0.0
Medtr4g060480.2 | acyl-CoA dehydrogenase | HC | chr4:22246164-22... 593 e-169
Medtr0837s0010.1 | acyl-CoA dehydrogenase | LC | scaffold0837:19... 216 2e-56
Medtr7g068850.1 | acyl-CoA dehydrogenase | HC | chr7:25296388-25... 156 4e-38
Medtr2057s0010.1 | acyl-CoA dehydrogenase | LC | scaffold2057:10... 80 3e-15
Medtr8g090375.1 | peroxisomal acyl-CoA oxidase | HC | chr8:38035... 59 8e-09
Medtr4g079290.1 | peroxisomal acyl-CoA oxidase | HC | chr4:30622... 51 2e-06
Medtr2g436030.1 | acyl-CoA dehydrogenase | HC | chr2:13954767-13... 50 3e-06
>Medtr4g060480.1 | acyl-CoA dehydrogenase | HC |
chr4:22246164-22240641 | 20130731
Length = 417
Score = 763 bits (1970), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/413 (88%), Positives = 376/413 (91%), Gaps = 3/413 (0%)
Query: 4 RINKTSSIFSTLFRTKXXXX---XXXXXXXXXXLFDETQIQFKESVAQFATENIAPHASK 60
RIN +IFST+FRT LFD+TQIQFKESVAQFATENIAPHAS
Sbjct: 5 RINTARTIFSTVFRTNSSHSHYASAAAFSTTSFLFDDTQIQFKESVAQFATENIAPHASN 64
Query: 61 IDHTNYFPKEVNLWKSMGEFNLHGITAPEEXXXXXXXXXXHCIAMEEISRASASVGLSYG 120
IDHTNYFPKEVNLWKSMGEFNLHGITAPEE HCIAMEEISRAS SVGLSYG
Sbjct: 65 IDHTNYFPKEVNLWKSMGEFNLHGITAPEEYGGLGLGYLYHCIAMEEISRASGSVGLSYG 124
Query: 121 AHSNLCLNQLVRNGSPDQKQKYLPKLISGDHVGALAMSEPNSGSDVVSMKCKADRVDGGY 180
AHSNLC+NQLVRNGS +QKQKYLPKLISGDHVGALAMSEPNSGSDVVSMKCKADRVDGGY
Sbjct: 125 AHSNLCINQLVRNGSHEQKQKYLPKLISGDHVGALAMSEPNSGSDVVSMKCKADRVDGGY 184
Query: 181 VLNGNKMWCTNGPVAQTLVIYAKTDITAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSD 240
VLNGNKMWCTNGP AQTLV+YAKTD TAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSD
Sbjct: 185 VLNGNKMWCTNGPTAQTLVVYAKTDATAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSD 244
Query: 241 TCELVFENCFVPEENVLGKEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQR 300
TCELVFENCFVPEENVLGKEGKGVYVMMSGLDLERLVLAAGPLGIMQ+CLDVVLPYVRQR
Sbjct: 245 TCELVFENCFVPEENVLGKEGKGVYVMMSGLDLERLVLAAGPLGIMQSCLDVVLPYVRQR 304
Query: 301 EQFGRPIGEFQFIQGKVADMYTSLQSSRSYVYAVARDCDNGKVDPKDCAGAILCAAERAT 360
EQFGRPIGEFQFIQGKVADMYTSLQSSRSYVY+VARDCDNGKVDPKDCAG ILCAAERAT
Sbjct: 305 EQFGRPIGEFQFIQGKVADMYTSLQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERAT 364
Query: 361 QVALQAIQCLGGNGYVNEYPTGRLLRDAKLYEIGAGTSEIRRMIIGRELFKEQ 413
QVALQAIQCLGGNGYVNEYPTGRLLRDAKLYEIGAGTSEIRRMIIGR+LFKEQ
Sbjct: 365 QVALQAIQCLGGNGYVNEYPTGRLLRDAKLYEIGAGTSEIRRMIIGRDLFKEQ 417
>Medtr4g060480.2 | acyl-CoA dehydrogenase | HC |
chr4:22246164-22242077 | 20130731
Length = 332
Score = 593 bits (1528), Expect = e-169, Method: Compositional matrix adjust.
Identities = 285/328 (86%), Positives = 292/328 (89%), Gaps = 3/328 (0%)
Query: 4 RINKTSSIFSTLFRTKXXXX---XXXXXXXXXXLFDETQIQFKESVAQFATENIAPHASK 60
RIN +IFST+FRT LFD+TQIQFKESVAQFATENIAPHAS
Sbjct: 5 RINTARTIFSTVFRTNSSHSHYASAAAFSTTSFLFDDTQIQFKESVAQFATENIAPHASN 64
Query: 61 IDHTNYFPKEVNLWKSMGEFNLHGITAPEEXXXXXXXXXXHCIAMEEISRASASVGLSYG 120
IDHTNYFPKEVNLWKSMGEFNLHGITAPEE HCIAMEEISRAS SVGLSYG
Sbjct: 65 IDHTNYFPKEVNLWKSMGEFNLHGITAPEEYGGLGLGYLYHCIAMEEISRASGSVGLSYG 124
Query: 121 AHSNLCLNQLVRNGSPDQKQKYLPKLISGDHVGALAMSEPNSGSDVVSMKCKADRVDGGY 180
AHSNLC+NQLVRNGS +QKQKYLPKLISGDHVGALAMSEPNSGSDVVSMKCKADRVDGGY
Sbjct: 125 AHSNLCINQLVRNGSHEQKQKYLPKLISGDHVGALAMSEPNSGSDVVSMKCKADRVDGGY 184
Query: 181 VLNGNKMWCTNGPVAQTLVIYAKTDITAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSD 240
VLNGNKMWCTNGP AQTLV+YAKTD TAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSD
Sbjct: 185 VLNGNKMWCTNGPTAQTLVVYAKTDATAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSD 244
Query: 241 TCELVFENCFVPEENVLGKEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQR 300
TCELVFENCFVPEENVLGKEGKGVYVMMSGLDLERLVLAAGPLGIMQ+CLDVVLPYVRQR
Sbjct: 245 TCELVFENCFVPEENVLGKEGKGVYVMMSGLDLERLVLAAGPLGIMQSCLDVVLPYVRQR 304
Query: 301 EQFGRPIGEFQFIQGKVADMYTSLQSSR 328
EQFGRPIGEFQFIQGKVADMYTSLQSSR
Sbjct: 305 EQFGRPIGEFQFIQGKVADMYTSLQSSR 332
>Medtr0837s0010.1 | acyl-CoA dehydrogenase | LC |
scaffold0837:1908-239 | 20130731
Length = 545
Score = 216 bits (551), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 123/369 (33%), Positives = 198/369 (53%), Gaps = 3/369 (0%)
Query: 34 LFDETQIQFKESVAQFATENIAPHASKIDHTNYFPKEVNLWKSMGEFNLHGITAPEEXXX 93
+F F+E V +F + IAPH ++ +H + P E LW+ GE+ L EE
Sbjct: 22 IFTPEHEAFREQVRRFCDKEIAPHHAQWEHDHLVPAE--LWRKAGEYALLCCWIGEEDGG 79
Query: 94 XXXXXXXHCIAMEEISRASASVGLSYGAHSNLCLNQLVRNGSPDQKQKYLPKLISGDHVG 153
I EE+ R A+ G + HS + + +G+P K++ LP + G+ +G
Sbjct: 80 PGGDLLFDFIVCEELGRVGAT-GPGFPLHSVIVAPYIAHHGTPALKKRMLPGMACGEKIG 138
Query: 154 ALAMSEPNSGSDVVSMKCKADRVDGGYVLNGNKMWCTNGPVAQTLVIYAKTDITAGSKGI 213
A+AM+EP++GSDV +++ A +V+NG K + TNG + +V+ KTD + G++GI
Sbjct: 139 AIAMTEPSAGSDVAAIRTTAKEDGDSWVINGQKTFITNGYNSNVIVLACKTDQSQGARGI 198
Query: 214 TAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPEENVLGKEGKGVYVMMSGLDL 273
+ F++E PGFS + LDK+G DT EL F++ VP EN+LG G+G +M GL
Sbjct: 199 SLFVVEADAPGFSRGRNLDKIGQYAQDTAELFFDDVRVPRENLLGVVGEGFRYLMQGLAQ 258
Query: 274 ERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPIGEFQFIQGKVADMYTSLQSSRSYVYA 333
ERL+++ ++ + YVR R+ F +P+ Q + K+A++ LQ+ R+Y
Sbjct: 259 ERLLVSVQCQSRAESAFEWTTQYVRDRKAFNQPLSNLQNTRFKMAELAADLQAGRAYCDQ 318
Query: 334 VARDCDNGKVDPKDCAGAILCAAERATQVALQAIQCLGGNGYVNEYPTGRLLRDAKLYEI 393
+ + G++D + L +E +V +Q GG GY+ EYP R DA++ I
Sbjct: 319 LIQLHMVGQLDAATASAGKLWHSELLGRVTDTCLQLHGGYGYMREYPIARAYVDARIERI 378
Query: 394 GAGTSEIRR 402
AGTSEI +
Sbjct: 379 YAGTSEIMK 387
>Medtr7g068850.1 | acyl-CoA dehydrogenase | HC |
chr7:25296388-25301382 | 20130731
Length = 433
Score = 156 bits (394), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 108/375 (28%), Positives = 183/375 (48%), Gaps = 11/375 (2%)
Query: 36 DETQIQFKESVAQFATENIAPHASKIDHTNYFPKEVNLWKSMGEFNLHGITAPEEXXXXX 95
+E I+ K V + +NIAP ++ FP + +GE + G T +
Sbjct: 54 EEQAIRMK--VRECMEKNIAPIMTQYWEKAEFP--FHAIPKLGELGIAGGTI-KGYGCPG 108
Query: 96 XXXXXHCIAMEEISRASASVGLSYGAHSNLCLNQLVRNGSPDQKQKYLPKLISGDHVGAL 155
IA E++R AS HS+L + + GS QKQKYLP L +
Sbjct: 109 LSVTGSAIATAEVARVDASCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLAQLKTIACW 168
Query: 156 AMSEPNSGSDVVSMKCKADRVDGGYVLNGNKMWCTNGPVAQTLVIYAKTDITAGSKGITA 215
A++EP+ GSD ++K A +V+GG++L G K W N A LVI+A+ T I
Sbjct: 169 ALTEPDYGSDASALKTTATKVEGGWILEGQKRWIGNSTFADLLVIFARNTST---NQING 225
Query: 216 FIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPEENVLGKEGKGVYVMMSG-LDLE 274
+I++K PG + + +K+G+R ++V FVP+E+ + EG + + L +
Sbjct: 226 YIVKKDAPGLTVTKIENKIGLRIVQNGDIVMRKVFVPDEDRI--EGVNSFQDTNKVLAVS 283
Query: 275 RLVLAAGPLGIMQACLDVVLPYVRQREQFGRPIGEFQFIQGKVADMYTSLQSSRSYVYAV 334
R+++A P+GI D+ Y+++R+QFG P+ FQ Q K+ M +++Q+ + +
Sbjct: 284 RVMVAWQPIGISMGIYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLSNVQAMILVGWRL 343
Query: 335 ARDCDNGKVDPKDCAGAILCAAERATQVALQAIQCLGGNGYVNEYPTGRLLRDAKLYEIG 394
+ ++GK+ P + RA + A + LGGNG + ++ + D +
Sbjct: 344 CKLYESGKMTPGHASLGKSWITLRARETAALGRELLGGNGILADFLVAKAFCDLEPIYTY 403
Query: 395 AGTSEIRRMIIGREL 409
GT EI ++ GRE+
Sbjct: 404 EGTYEINTLVTGREV 418
>Medtr2057s0010.1 | acyl-CoA dehydrogenase | LC |
scaffold2057:1000-171 | 20130731
Length = 276
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/271 (24%), Positives = 121/271 (44%), Gaps = 6/271 (2%)
Query: 35 FDETQIQFKESVAQFATENIAPHASKIDHTNYFPKEVNLWKSMGEFNLHGITAPEEXXXX 94
FD TQ Q ++A+F A++ D + W +G+ L + PE
Sbjct: 3 FDWTQEQ-HATLARFRDIGTEIAAAERDARAPAGFDAAGWTRLGQEGLWDMIVPETYGGD 61
Query: 95 XXXXXXHCIAMEEISRA--SASVGLSYGAHSNLCLNQLVRNGSPDQKQKYLPKLISGDHV 152
A+E ++ ++ LS A + + + L R G+ Q+ +Y ++ G+ +
Sbjct: 62 GHGWWHFSAALEGLASTIRRPALLLSVIAQAGM-VRALERYGTATQQDRYFGAILRGE-L 119
Query: 153 GALAMSEPNSGSDVVSMKCKADRVDGGYVLNGNKMWCTNGPVAQTLVIYAKTDITAGSKG 212
A A++EP +G+DV S+ K GY L G+K + P+A+ +++ + + T G +
Sbjct: 120 SATAIAEPGTGTDVRSIATKLVEHGDGYRLTGSKFNIAHAPLARFILVVTRVE-TPGRRN 178
Query: 213 ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPEENVLGKEGKGVYVMMSGLD 272
I+++ PG + A KLG+ T L F++C + +LG+ G G+ ++ +
Sbjct: 179 TALVIVDRDQPGMTVAAPDSKLGLDDLPTGALHFDDCPIARGQLLGEPGAGLGNLIDIIS 238
Query: 273 LERLVLAAGPLGIMQACLDVVLPYVRQREQF 303
L RL + L + Y R R F
Sbjct: 239 LGRLYYGLVAAQVTAPYLRDAIAYCRDRRSF 269
>Medtr8g090375.1 | peroxisomal acyl-CoA oxidase | HC |
chr8:38035172-38040185 | 20130731
Length = 689
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 78/364 (21%), Positives = 144/364 (39%), Gaps = 60/364 (16%)
Query: 105 MEEISRASASVGLSYGAHSNLCLNQLVRNGSPDQKQKYLPKLISGDHVGALAMSEPNSGS 164
+E + S+G+ G +L ++ G+ K KY + + D+ G AM+E + GS
Sbjct: 129 LEAVGSVDMSLGIKMGVQYSLWGGSVINLGTQKHKDKYYDGIDNLDYPGCFAMTELHHGS 188
Query: 165 DVVSMKCKA--DRVDGGYVLN-----GNKMWCTNGPV-AQTLVIYAKTDIT------AGS 210
+V ++ A D + ++++ K W N V + ++A+ +
Sbjct: 189 NVQGLQTLATFDPITDEFIIDTPNDGAIKWWIGNAAVHGKFATVFARLKLPNYDAKGVSD 248
Query: 211 KGITAFII-------EKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPEENVLG----- 258
G+ AFI+ + +PG K+G+ G D L F + +P +N+L
Sbjct: 249 MGVHAFIVPIRDMKTHQTLPGIEIHDCGHKVGLNGVDNGALRFRSVRIPRDNLLNRFGDV 308
Query: 259 -KEGKGVYVMMS-----GLDLERLV-----LAAGPLGIMQACLDVVLPYVRQREQFG--- 304
++GK + S G L LV LA + +++ + + Y R+QFG
Sbjct: 309 SRDGKYTSTLPSVNKRFGATLGELVGGRVGLAYSSVSVLKVSATIAIRYSLLRQQFGPRD 368
Query: 305 RP---IGEFQFIQGKVADMYTSLQSSRSYVYAVARDCDNGKVDPKDCAGAILCAAERATQ 361
+P I ++Q Q K+ M L S+ ++ +A + K L A A
Sbjct: 369 QPEVTILDYQSHQHKLMPM---LASTYAFHFATTNLVEK-YAQMKKSHDEELVADVHALS 424
Query: 362 VALQAI-------------QCLGGNGYVNEYPTGRLLRDAKLYEIGAGTSEIRRMIIGRE 408
L+A + GG+GY G L D +++ G + + + +
Sbjct: 425 AGLKAYVTSYTAKSLSICREACGGHGYAAVNRFGSLRNDHDIFQTFEGDNTVLLQQVAAD 484
Query: 409 LFKE 412
L K+
Sbjct: 485 LLKQ 488
>Medtr4g079290.1 | peroxisomal acyl-CoA oxidase | HC |
chr4:30622603-30615873 | 20130731
Length = 678
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 89/228 (39%), Gaps = 30/228 (13%)
Query: 106 EEISRASASVGLSYGAHSNLCLNQLVRNGSPDQKQKYLPKLISGDHVGALAMSEPNSGSD 165
E I S+ + G H L + G+ K+L + D G AMSE GS+
Sbjct: 138 EVIGMYDHSLAVKLGVHIFLWGGAVKFLGTKRHHDKWLRATENYDIKGCFAMSELGHGSN 197
Query: 166 V--VSMKCKADRVDGGYVLN-----GNKMWCTNGPVAQT-LVIYAKTDITAGSKGITAFI 217
V + D + G +V+N K W T +++++ +I ++G+ AFI
Sbjct: 198 VRGIETVTTYDPISGEFVINTPCESAQKYWIGGAANHATHTIVFSQLNINGSNQGVHAFI 257
Query: 218 IE------KGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPEENVLGKEG----KGVYV- 266
+ P A+ K+G+ G D + F+N +P EN+L G Y+
Sbjct: 258 AQIRDSDGNICPNIRIAECGHKIGLNGVDNGRIWFDNVRIPRENLLNSMADVSPSGEYLS 317
Query: 267 -----------MMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQF 303
++ L R+ +A + I + L + + Y R F
Sbjct: 318 AIKNTDQRFAAFLAPLTSGRVTIAVSSVYISKISLAIAIRYALTRRAF 365
>Medtr2g436030.1 | acyl-CoA dehydrogenase | HC |
chr2:13954767-13956813 | 20130731
Length = 259
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 83/212 (39%), Gaps = 9/212 (4%)
Query: 203 KTDITAG-SKGITAFIIEKGMPGFSTAQKLDKLGMRGSDT--CELVFENCFVPEENVLGK 259
KTD A K + +++ PG + L G + E+VFEN VP N+L
Sbjct: 40 KTDFNAARHKQQSMILVDTQTPGVHIKRPLTVFGFDDAPHGHAEVVFENVRVPATNILMG 99
Query: 260 EGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPIGEFQFIQGKVAD 319
EG+G + + L RL +G + + ++ R+ FG+ I + +A
Sbjct: 100 EGRGFEIAQARLGPGRLHHCMRLIGAAERGMQLMAHRALSRKAFGKMIAQHGSFVSDLAK 159
Query: 320 MYTSLQSSRSYVYAVARDCDNGKVDPKDCAGAILCAAERATQVAL----QAIQCLGGNGY 375
L+ +R V A D + K G I A A ++ L AIQ G G
Sbjct: 160 CRIELEKTRLLVLEAADQLD--RYGNKKARGIIAMAKVAAPKMGLMVLDMAIQVHGAAGV 217
Query: 376 VNEYPTGRLLRDAKLYEIGAGTSEIRRMIIGR 407
++ L A+ I G E+ IG+
Sbjct: 218 SSDTVLAHLWAAARTLRIADGPDEVHLGTIGK 249