Miyakogusa Predicted Gene

Lj0g3v0358549.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0358549.1 Non Characterized Hit- tr|B9RLL7|B9RLL7_RICCO
Kelch repeat protein, putative OS=Ricinus communis
GN=,33.07,2e-16,seg,NULL,CUFF.24665.1
         (260 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g109680.1 | acyl-CoA-binding domain protein | HC | chr4:45...    74   1e-13

>Medtr4g109680.1 | acyl-CoA-binding domain protein | HC |
           chr4:45603316-45596881 | 20130731
          Length = 609

 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/232 (32%), Positives = 103/232 (44%), Gaps = 42/232 (18%)

Query: 32  GKRACQVKVTGSNSYGYTIETIIDGKRFHGILFRDKPNPLNPATNTSSRRKRTFDETVSV 91
           GK+  + KVT + S GYTIET+IDGK   GILF +K N L+ + + +  RKRT  E   V
Sbjct: 396 GKKTFEAKVTENISEGYTIETVIDGKPLRGILFLNKQNSLHSSAH-AFNRKRTAGEIDGV 454

Query: 92  FSNDMHRDNLTMSKVLKQSGTGDRWEVQGDVSASETLKXXXXXXXXXXXXXXXXXXXTKS 151
            SN  H + L   KV            Q +   SE+L                    +++
Sbjct: 455 ISNGTHSNKLKTHKV-----------NQMENRHSESL-----------------YHSSEA 486

Query: 152 PSLLALIQTTLSQQHDSRKASADPEPAAASLNRNDNERNDKS-----KNDGANDNMTRSE 206
              LA      +    + K   +P   AASLNRN  +    +     KND AND +T S 
Sbjct: 487 VVALAARNPMTANASVNHKVPTNPGLEAASLNRNAEKIETPTLGVNLKNDRAND-VTNSR 545

Query: 207 VEVRTDDQTNVPISNNEAPRLERHDQKSDAAAAEGGIAKDCTTRRVEDTENQ 258
           VE     Q+N+PISN+E  RL   D+ SD +       K  T     +  NQ
Sbjct: 546 VEA----QSNMPISNSEVSRL---DKNSDPSNCNTEFMKPATAESAVNLSNQ 590