Miyakogusa Predicted Gene

Lj0g3v0358459.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0358459.1 tr|B9HBR7|B9HBR7_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_561442 PE=4 SV=1,54.05,2e-19,
,CUFF.24659.1
         (108 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g086880.1 | NAC transcription factor-like protein | HC | c...   143   4e-35
Medtr4g052250.1 | hypothetical protein | HC | chr4:18908206-1890...    56   8e-09

>Medtr2g086880.1 | NAC transcription factor-like protein | HC |
           chr2:36530061-36538039 | 20130731
          Length = 589

 Score =  143 bits (360), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 75/108 (69%), Positives = 81/108 (75%)

Query: 1   MSRPMXXXXXXXXXXXTSQFEWKQPLVADVDSNPNVSQKQRQISKPEETVKEKIILVQEK 60
           MSRPM           TSQFEWKQPLV+DV+SN +V+QKQ +IS  EETVKEKIILVQEK
Sbjct: 482 MSRPMLLVFLLIILIITSQFEWKQPLVSDVESNSSVTQKQHRISNAEETVKEKIILVQEK 541

Query: 61  NIRRLNELVRHLQEQLQQCRXXXXXXXXXXXXLTERILELERQQILED 108
           NIRRLNELVRHLQEQLQQC+            LTERILELERQQILED
Sbjct: 542 NIRRLNELVRHLQEQLQQCKGSNGTINSTVGPLTERILELERQQILED 589


>Medtr4g052250.1 | hypothetical protein | HC |
          chr4:18908206-18906444 | 20130731
          Length = 106

 Score = 55.8 bits (133), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 27/32 (84%), Positives = 29/32 (90%)

Query: 49 TVKEKIILVQEKNIRRLNELVRHLQEQLQQCR 80
          T  E IILVQEKNIRRLNE+VRHLQ+QLQQCR
Sbjct: 11 TDNESIILVQEKNIRRLNEVVRHLQQQLQQCR 42