Miyakogusa Predicted Gene
- Lj0g3v0358289.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0358289.1 tr|D7KC86|D7KC86_ARALL Predicted protein
OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_682952
PE,31.95,7e-17,ubiquitin,Ubiquitin; no description,NULL; Hect, E3
ligase catalytic domain,HECT; Ubiquitin-like,NULL,CUFF.24647.1
(536 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr2g025830.1 | E3 ubiquitin-protein ligase UPL5-like protein ... 402 e-112
Medtr4g133120.1 | E3 ubiquitin-protein ligase UPL5-like protein ... 400 e-111
Medtr2g025790.1 | E3 ubiquitin-protein ligase UPL5-like protein ... 376 e-104
Medtr2g025810.1 | E3 ubiquitin-protein ligase UPL5-like protein ... 355 6e-98
Medtr2g025950.1 | ubiquitin-protein ligase, UPL5 | LC | chr2:926... 329 5e-90
Medtr4g080920.1 | polyubiquitin 3 | HC | chr4:31306680-31305977 ... 53 6e-07
>Medtr2g025830.1 | E3 ubiquitin-protein ligase UPL5-like protein |
LC | chr2:9259188-9254803 | 20130731
Length = 820
Score = 402 bits (1033), Expect = e-112, Method: Compositional matrix adjust.
Identities = 231/507 (45%), Positives = 314/507 (61%), Gaps = 18/507 (3%)
Query: 36 LRFFVRSMPISNSFVLHGSEEDSVKSVHERIESRTGIPIREQVLIHQGKQLRWEQNLGEC 95
L+FFVR M N+ V+ S E +V+S+ E+I S+T IPI+ Q LI++GKQL EQ+L EC
Sbjct: 38 LQFFVRMMWNCNTLVIRASREKTVESLLEQISSKTRIPIQHQRLIYEGKQLTLEQSLCEC 97
Query: 96 GIQNDANLQLVGRLRSGGCSEEVYAVVGQMVSLIRRVCGGELDLSVTPIIEHVMSIQFMA 155
GI+NDANLQLVGRLRS C + V+ +VSLI R+C GEL + + II+ ++ ++
Sbjct: 98 GIENDANLQLVGRLRSIACPK-VWKATQYIVSLILRLCRGELVIGASRIIDDHLTY-YIN 155
Query: 156 KLNAFDVLVACKAPEALIKLRLSSFSGNQDIAGSAIALFLESCRYMISKGLHACCLGAVV 215
F V + + P L+ L +S ++ N +A S I F+ C + K L L +
Sbjct: 156 DSEYFSVFMFMEIPSLLVALYMSRYA-NACVADSVIKDFVRICLDLKDKKLQGVYLEVSL 214
Query: 216 EFCKLFT-VLVGGNEPLFMSCLSCLRGTLEGNGD---RDPNRRVVLKGVFDYVCELVGVL 271
EFC+L ++PL++ C L G ++P V+L+GVFD V E+ L
Sbjct: 215 EFCELLRRARCKYDDPLYVFCRDSFSSLLTLVGRVNFQNPKGEVMLRGVFDCVHEIADEL 274
Query: 272 LREMDLSTNRPVP--FLLTRFQELVDFIIPLRNGIRGLQAWE------AVIDGEVPSLAK 323
LR +DLS N P F + V F LR G+ QA + E P +A
Sbjct: 275 LRFLDLSMNCPTGEGFSFNFVLDFVKFSGHLRMGLAEQQATSDEFLNCTIGYEEEPLIAG 334
Query: 324 EVNHIRFMYMQLLSKMDGSLQAMEDCLANKEEGNRGVAVAGMGWSLHISLLKRLYTISKA 383
V+ + ++++LLSKMD LQ MEDCL NK+ G AV GWS +I +LK LY ISK
Sbjct: 335 VVDQLHIVFIKLLSKMDECLQVMEDCLVNKKHGKGDGAVINNGWSHYIIILKVLYHISK- 393
Query: 384 KLYDGAEEMFWGVLIRRRNMVSQLFLWFVKRTDDHRWILEQKSATNFECRRHLAMMLFPH 443
LY GA+EMFW VL+R+++M+S + + + K TDDHRW+LE +S T+FECRRHLAMM+FP
Sbjct: 394 -LYSGAKEMFWEVLLRQKSMLSHMIVRYSKNTDDHRWVLENRSVTDFECRRHLAMMMFPD 452
Query: 444 VRHVYGMGHEMLIDRSRLLTDSFEYISHASPESLRAGLLMKFQKENATGPGVVREWFLLV 503
+ +G+EMLIDRS+LL +SFEYIS A+ SL GL M+F+ E TGPGVVREW +LV
Sbjct: 453 LND-ESLGYEMLIDRSQLLAESFEYISQANSTSLEGGLFMEFRNEEGTGPGVVREWLVLV 511
Query: 504 CREIFNPLNGLFVACPNDRKRFLPNPG 530
C+EIFNP + LFVACPNDR+RF PN
Sbjct: 512 CQEIFNPEHALFVACPNDRRRFFPNAA 538
>Medtr4g133120.1 | E3 ubiquitin-protein ligase UPL5-like protein |
HC | chr4:55702325-55696646 | 20130731
Length = 881
Score = 400 bits (1027), Expect = e-111, Method: Compositional matrix adjust.
Identities = 233/526 (44%), Positives = 316/526 (60%), Gaps = 39/526 (7%)
Query: 36 LRFFVRSMPISNSFVLHGSEEDSVKSVHERIESRTGIPIREQVLIHQGKQLRWEQNLGEC 95
+ FF+R M + V+H E++VKS+HERIE GIP+ EQ LI GKQL+WEQ L EC
Sbjct: 80 IHFFIRMMSKGYNVVIHAYPEETVKSIHERIEEMKGIPLFEQRLIFNGKQLQWEQTLVEC 139
Query: 96 GIQNDANLQLVGRLRSGGCSEEVYAVVGQMVSLIRRVCGG-ELDLSVTPIIEHVMSIQFM 154
GIQNDANL LVGR+RS + + VV MVS++ +C G L +V I + + +
Sbjct: 140 GIQNDANLHLVGRMRSTE-HPQAWQVVNDMVSIVYDLCHGVNLPDAVKSIKSLLTTYINL 198
Query: 155 A-----KLNA------FDVLVACKAPEALIKLRLSSFSGNQDIAGSAIALFLESCRYMIS 203
A KL+A F + + A L+ L +S ++GN+ + + I FL C+ +S
Sbjct: 199 ALAPKPKLDADSATSYFQIFMNSSAISVLVTLYVSPYTGNKACSDTCIKHFLNGCKTSLS 258
Query: 204 KGLHACCLGAVVEFCKLFTVLVGGNEPLFMSCLSCLRGTLEGN-----GDRDPNRR--VV 256
K H +EFCKL + VG N+PL++ C S L G LE D N + V+
Sbjct: 259 KTFHTQAARVALEFCKLLS-RVGTNDPLYLFCRSSLGGFLEAAEISLAASEDENHKGLVL 317
Query: 257 LKGVFDYVCELVGVLLREMDLSTNRP--VPFLLTRFQELVDFIIPLRNGI------RGLQ 308
++ +F +V EL LLR +DLS P LL ++ F++P+R GI RG
Sbjct: 318 VQDLFPFVRELADSLLRNLDLSLESPSLANPLLNSVEDFQAFLVPVRTGIEQQQALRGCV 377
Query: 309 AWEAVIDGEVPSL-AKEVNHIRFMYMQLLSKMDGSLQAMEDCLANKE---EGNRGVAVAG 364
A+ D L A+E+ ++R +Y QLLSK+D LQ M+ +KE E N
Sbjct: 378 AYHQKQDKNKNGLVAEEIEYLRLLYDQLLSKIDTCLQKMDKRFTDKEMVFEENYFYPAC- 436
Query: 365 MGWSLHISLLKRLYTISKAKLYDGAEEMFWGVLIRRRNMVSQLFLWFVKRTDDHRWILEQ 424
SL++S+LK L+ ISK LYDGA E VL+RR++++ + + + KR D+H+WILE
Sbjct: 437 ---SLYLSILKELHKISK--LYDGATEELCHVLMRRKSVMCLIIVKYAKRADEHQWILEY 491
Query: 425 KSATNFECRRHLAMMLFPHVRHVYGMGHEMLIDRSRLLTDSFEYISHASPESLRAGLLMK 484
K+ TNFE RRHLAMM+FP V+ Y HEMLIDRS+LLT+SFEYI+ A PESLRAGL M+
Sbjct: 492 KNVTNFEARRHLAMMIFPEVKEDYEELHEMLIDRSQLLTESFEYIARADPESLRAGLFME 551
Query: 485 FQKENATGPGVVREWFLLVCREIFNPLNGLFVACPNDRKRFLPNPG 530
F+ E ATGPGV+REWFLLVC+ +FN + LFVACP DR RFLPN
Sbjct: 552 FKNEEATGPGVLREWFLLVCQALFNQEHALFVACPKDRTRFLPNSA 597
>Medtr2g025790.1 | E3 ubiquitin-protein ligase UPL5-like protein |
LC | chr2:9238522-9234872 | 20130731
Length = 826
Score = 376 bits (966), Expect = e-104, Method: Compositional matrix adjust.
Identities = 226/527 (42%), Positives = 323/527 (61%), Gaps = 31/527 (5%)
Query: 17 NSTTITNAEXXXXXXXXXXLRFFVRSMPISNSFVLHGSEEDSVKSVHERIESRTGIPIRE 76
N T T++E L+FFVR M N+ V+H S ED+V+S+ ++I S+T IPI
Sbjct: 36 NDTKTTSSE----------LQFFVRMMWKCNTIVIHASREDTVESILQQISSKTKIPIEY 85
Query: 77 QVLIHQGKQLRWEQNLGECGIQNDANLQLVGRLRSGGCSEEVYAVVGQMVSLIRRVCGGE 136
Q LI+ GKQL+ +Q+L +CGI+NDANLQLVG+LRS G S V+ +VS+I +C GE
Sbjct: 86 QRLIYNGKQLQQQQSLSQCGIENDANLQLVGQLRSIGRSV-VWNSADDIVSMILNLCRGE 144
Query: 137 LDLSVTPIIEHVMSIQFMAKLNAFDVLVACKAPEALIKLRLSSFSGNQDIAGSAIALFLE 196
L+ +I H ++M F K P L+ L +S F+ N++IA +I F+E
Sbjct: 145 -SLNGASMIIHNHFAKYMNNFEYFYFFKLMKIPSLLVALYMSPFACNKNIADFSIESFIE 203
Query: 197 SCRYMISKGLHACCLGAVVEFCKLFT-VLVGGNEPLFMSC---LSCLRGTLEGNGDRDPN 252
C + K L L +++FC+L V +EPL++SC L + G +PN
Sbjct: 204 ICLDLKCKKLQGFYLEILLDFCELLRGVGFTCDEPLYVSCRDGFGNLLTLVGGVPINNPN 263
Query: 253 RRVVLKGVFDYVCELVGVLLREMDLSTNRPVPFLLTRFQELVDFII---PLRNGIRGLQA 309
+V+L+GV D V E+ LL +DLS N ++ ++ ++DF+ PLR G QA
Sbjct: 264 MKVLLRGVVDCVHEIADELLMYLDLSMNWDTAKGIS-YKVVLDFVKFCGPLRMGFAEEQA 322
Query: 310 WEA------VIDGEVPSLAKEVNHIRFMYMQLLSKMDGSLQAMEDCLANKEEGNRGVAVA 363
+ E P + + + ++++LLSKMD LQ MEDCL NKE+G +G +
Sbjct: 323 TSDESLNYDICYEEDPLFSGVPDQLHIVFIKLLSKMDECLQVMEDCLVNKEQG-KGDVIH 381
Query: 364 GMGWSLHISLLKRLYTISKAKLYDGAEEMFWGVLIRRRNMVSQLFLWFVKRTDDHRWILE 423
GWS ++ +LK L+ ISK Y GA+E FWG+L+ R+N++ + + +VK+TDDH+W+LE
Sbjct: 382 N-GWSHYLIILKELFHISK--FYSGAQEKFWGLLLHRKNVLPHMIVRYVKKTDDHQWLLE 438
Query: 424 QKSATNFECRRHLAMMLFPHVRHVYGMGHEMLIDRSRLLTDSFEYISHASPESLRAGLLM 483
K T+FE RRHLA+MLFP + G+EMLIDRS++L +SFEY+S A +SL+ G+ M
Sbjct: 439 NKIVTDFESRRHLALMLFPDSKDEIS-GYEMLIDRSQVLAESFEYMSRAKAKSLQGGIFM 497
Query: 484 KFQKENATGPGVVREWFLLVCREIFNPLNGLFVACPNDRKRFLPNPG 530
F+ E ATGPGV+REWF+LVCREIFNP N LFVACPND +RF PN
Sbjct: 498 AFKNEKATGPGVLREWFVLVCREIFNPKNALFVACPNDHRRFFPNAA 544
>Medtr2g025810.1 | E3 ubiquitin-protein ligase UPL5-like protein |
LC | chr2:9251025-9246646 | 20130731
Length = 815
Score = 355 bits (911), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 222/528 (42%), Positives = 311/528 (58%), Gaps = 39/528 (7%)
Query: 17 NSTTITNAEXXXXXXXXXXLRFFVRSMPISNSFVLHGSEEDSVKSVHERIESRTGIPIRE 76
N T T++E L+FFVR M N+ V+H S ED+V+S+ ++I S+T IPI
Sbjct: 31 NDTKTTSSE----------LQFFVRMMWKCNTIVIHASREDTVESILQQISSKTKIPIEY 80
Query: 77 QVLIHQGKQLRWEQNLGECGIQNDANLQLVGRLRSGGCSEEVYAVVGQMVSLIRRVCGGE 136
Q LI+ GKQL+ +Q+L +CGI+NDANLQLVG+LRS V+ +VS+I ++C GE
Sbjct: 81 QRLIYNGKQLQQQQSLSQCGIENDANLQLVGQLRSI-VRSVVWNSTDDIVSMILKLCRGE 139
Query: 137 LDLSVTPIIEHVMSIQFMAKL-----NAFDVLVACKAPEALIKLRLSSFSGNQDIAGSAI 191
P+I SI F N+F V+ K P L+ L S + N IA S+I
Sbjct: 140 ------PVIG--ASINFCKHFTKYMHNSFYVIKIMKIPSLLVALFKSPHASNASIADSSI 191
Query: 192 ALFLESCRYMISKGLHACCLGAVVEFCKLFT-VLVGGNEPLFMSCLSCLRGTLEGNGD-- 248
F++ C + K L + L ++EFC+L V + PL++ C L G
Sbjct: 192 RNFVKVCLDLKCKTLQSAYLEVLLEFCELLRGVGCKCDHPLYVCCRDGFVELLILVGGVL 251
Query: 249 -RDPNRRVVLKGVFDYVCELVGVLLREMDLSTNRPVPFLLTR--FQELVDFIIPLRNGIR 305
++P +V+L+GVFD V E+ LLR +DLS N P L+ + V F PLR G
Sbjct: 252 IKNPKMKVLLRGVFDCVREITDELLRFLDLSMNFPTKRGLSYKVVFDFVKFCCPLRMGFA 311
Query: 306 GLQAWEAVID---GEVPSLAKEVNHIRFMYMQLLSKMDGSLQAMEDCLANKEEGNRGVAV 362
QA D E P + + ++++ LSKMD LQ MEDCL NK+ G + V
Sbjct: 312 KEQATSLNCDICYEEDPLFLGVPDQLHIVFIKSLSKMDECLQVMEDCLVNKKRGKGELDV 371
Query: 363 AGMGWSLHISLLKRLYTISKAKLYDGAEEMFWGVLIRRRNMVSQLFLWFVKRTDDHRWIL 422
+ ++ +LK L+ ISK Y GA+E FWG+ +RR+N++ + + +VK+ DDH W+L
Sbjct: 372 LH---NCYLIILKELFHISK--FYSGAQEQFWGLFLRRKNVLPHMIVRYVKKPDDHWWLL 426
Query: 423 EQKSATNFECRRHLAMMLFPHVRHVYGMGHEMLIDRSRLLTDSFEYISHASPESLRAGLL 482
E + T+FE R+HL MMLFP ++ +G+EMLIDRS++L +SFEYIS A P+SL+ L
Sbjct: 427 ENRIVTDFESRKHLVMMLFPDLKDKI-LGYEMLIDRSQVLAESFEYISRAMPKSLQGDLF 485
Query: 483 MKFQKENATGPGVVREWFLLVCREIFNPLNGLFVACPNDRKRFLPNPG 530
M F+ E ATGPGV+REWF+LVC+EIFNP N LFVACPND +RF PN
Sbjct: 486 MAFKNEKATGPGVLREWFVLVCQEIFNPRNALFVACPNDHRRFFPNTA 533
>Medtr2g025950.1 | ubiquitin-protein ligase, UPL5 | LC |
chr2:9269088-9264809 | 20130731
Length = 777
Score = 329 bits (843), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 194/454 (42%), Positives = 272/454 (59%), Gaps = 24/454 (5%)
Query: 90 QNLGECGIQNDANLQLVGRLRSGGCSEEVYAVVGQMVSLIRRVCGGELDLSVTPIIEHVM 149
++L ECGI+NDANLQLVGRLRS C + V+ +VSLI R+C G+ + + II+
Sbjct: 53 RSLRECGIENDANLQLVGRLRSIVCPK-VWKAKHYIVSLILRLCTGKSVIGASTIIDDCF 111
Query: 150 SIQFMAKLNAFDVLVACKAPEALIKLRLSSFSGNQDIAGSAIALFLESCRYMISKGLHAC 209
+ ++ F V + + P L+ L N IA S I F++ C K L
Sbjct: 112 T-NYINDSEYFSVSMFMEIPSLLVDLY-----ANGRIAYSVIKDFVKICLNSKDKKLQGV 165
Query: 210 CLGAVVEFCKLFT-VLVGGNEPLFMSC---LSCLRGTLEGNGDRDPNRRVVLKGVFDYVC 265
L ++EFC+L ++ L++ C + L + G +P +V+L+GVFD V
Sbjct: 166 YLEVLLEFCELLRRTGCKSDDRLYVFCRDSFASLLTLVGGVSFHNPKGKVMLRGVFDCVH 225
Query: 266 ELVGVLLREMDLSTNRPVPFLLTRFQELVDFII---PLRNGIRGLQAWE------AVIDG 316
E+ LLR +DLS N P L+ F+ ++DF+ LR G+ QA A+
Sbjct: 226 EIAYKLLRFLDLSMNCPTGEGLS-FKVVLDFVKFSDHLRMGLAMHQATSDEFLNCAICYT 284
Query: 317 EVPSLAKEVNHIRFMYMQLLSKMDGSLQAMEDCLANKEEGNRGVAVAGMGWSLHISLLKR 376
E P A V+ + ++++LLSKMD L+ MEDCL NK+ G A GWS +I +LK
Sbjct: 285 EGPLFAGVVDQLHIVFIKLLSKMDKCLEVMEDCLVNKKHGKGDGAAVHNGWSHYIIILKV 344
Query: 377 LYTISKAKLYDGAEEMFWGVLIRRRNMVSQLFLWFVKRTDDHRWILEQKSATNFECRRHL 436
L+ ISK Y A+E FWG+ +RR+N++ + + +VK+TDDHRW+LE + T+FE RRHL
Sbjct: 345 LFHISK--FYSSAQEQFWGLFLRRKNVLPHMIVRYVKKTDDHRWLLENRIVTDFESRRHL 402
Query: 437 AMMLFPHVRHVYGMGHEMLIDRSRLLTDSFEYISHASPESLRAGLLMKFQKENATGPGVV 496
MMLFP++ +G+EMLIDRS++L +SF YIS A P SL+ LLM F+ E ATGPGV+
Sbjct: 403 VMMLFPYLNDEI-LGYEMLIDRSQVLAESFGYISQAMPRSLQGDLLMAFKNEKATGPGVL 461
Query: 497 REWFLLVCREIFNPLNGLFVACPNDRKRFLPNPG 530
REWF+LVC+EIFNP N LFVACPND +RF PN
Sbjct: 462 REWFVLVCQEIFNPRNALFVACPNDHRRFFPNTA 495
>Medtr4g080920.1 | polyubiquitin 3 | HC | chr4:31306680-31305977 |
20130731
Length = 231
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query: 36 LRFFVRSMPISNSFVLHGSEEDSVKSVHERIESRTGIPIREQVLIHQGKQLRWEQNLGEC 95
++ FV+++ + L D++ +V +I+ + GIP +Q LI GKQL + LG+
Sbjct: 77 MQIFVKTLT-GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLGDY 135
Query: 96 GIQNDANLQLVGRLRSGGCSEEVYAVVGQMVSL 128
IQ ++ L LV RLR GG V + G+ ++L
Sbjct: 136 NIQKESTLHLVLRLR-GGMQIFVNTLTGKTITL 167