Miyakogusa Predicted Gene

Lj0g3v0358139.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0358139.1 Non Characterized Hit- tr|C5WSU0|C5WSU0_SORBI
Putative uncharacterized protein Sb01g042980 OS=Sorghu,54.08,7e-19,
,CUFF.24636.1
         (112 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g025300.1 | U5 small nuclear ribonucleoprotein helicase | ...   164   2e-41
Medtr3g025300.2 | U5 small nuclear ribonucleoprotein helicase | ...   164   2e-41

>Medtr3g025300.1 | U5 small nuclear ribonucleoprotein helicase | HC
           | chr3:7719529-7688875 | 20130731
          Length = 2081

 Score =  164 bits (414), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 79/103 (76%), Positives = 88/103 (85%), Gaps = 1/103 (0%)

Query: 1   MLLQIPRFSNSLRDPFDVDQAYLHRKTILHNRKPPRNAARSLDESELARKIVYGWEEASV 60
           ML+QIPR +NSLRDPFD+D+AYLHRKT+L NR   RN A SLDESELARKIVYGWEEAS 
Sbjct: 1   MLIQIPRLTNSLRDPFDIDEAYLHRKTVLQNRNT-RNVASSLDESELARKIVYGWEEASS 59

Query: 61  EVHQTSKQFIGAVVDLVDGEIPSEEFHEVALAVYRLFGRPMEE 103
           EV Q  KQFIGAVV LVDGE+ SE+FHEVAL VYRLF RP++E
Sbjct: 60  EVRQAYKQFIGAVVGLVDGEMRSEDFHEVALTVYRLFSRPIDE 102


>Medtr3g025300.2 | U5 small nuclear ribonucleoprotein helicase | HC
           | chr3:7719529-7695186 | 20130731
          Length = 1734

 Score =  164 bits (414), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 79/103 (76%), Positives = 88/103 (85%), Gaps = 1/103 (0%)

Query: 1   MLLQIPRFSNSLRDPFDVDQAYLHRKTILHNRKPPRNAARSLDESELARKIVYGWEEASV 60
           ML+QIPR +NSLRDPFD+D+AYLHRKT+L NR   RN A SLDESELARKIVYGWEEAS 
Sbjct: 1   MLIQIPRLTNSLRDPFDIDEAYLHRKTVLQNRNT-RNVASSLDESELARKIVYGWEEASS 59

Query: 61  EVHQTSKQFIGAVVDLVDGEIPSEEFHEVALAVYRLFGRPMEE 103
           EV Q  KQFIGAVV LVDGE+ SE+FHEVAL VYRLF RP++E
Sbjct: 60  EVRQAYKQFIGAVVGLVDGEMRSEDFHEVALTVYRLFSRPIDE 102