Miyakogusa Predicted Gene

Lj0g3v0357159.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0357159.1 Non Characterized Hit- tr|I1JA31|I1JA31_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.26807
PE,58.23,0.00000000002,NUCLEOPORIN 50,NULL,CUFF.24586.1
         (193 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g010950.1 | RanBP1 domain protein | HC | chr5:3042243-3049...   265   3e-71
Medtr5g010950.2 | RanBP1 domain protein | HC | chr5:3042380-3049...   236   1e-62

>Medtr5g010950.1 | RanBP1 domain protein | HC | chr5:3042243-3049094
           | 20130731
          Length = 356

 Score =  265 bits (676), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 127/159 (79%), Positives = 136/159 (85%), Gaps = 3/159 (1%)

Query: 1   MMRGSKRMAVSEPNHSDTTETAAFRNKRVMEGSLFDAHRAEPSQQPTVSTPPLDMKRAES 60
           MMRGSKR+AVSEPN +D  ET  FRNKR+MEGSLFD HRAEPSQQ  ++TP LDMKRAES
Sbjct: 1   MMRGSKRLAVSEPNRADNNETQ-FRNKRIMEGSLFDVHRAEPSQQLMMATPSLDMKRAES 59

Query: 61  SQQHVRALNTQFASWIQTQLKNHPDELWEDGVRDYLDHASSIMEKFSDVVSWLKANATKA 120
           SQQHVRALNTQFASW+QTQLKNHPDELWEDGVRDYLDHA+ IMEKFSDVV+WLKANATKA
Sbjct: 60  SQQHVRALNTQFASWVQTQLKNHPDELWEDGVRDYLDHATGIMEKFSDVVNWLKANATKA 119

Query: 121 EILAP--DGGTSFAGKKFFPEATNKENKTFGEKTGSTPF 157
           E   P    G SFAGKKF PE TNKENK FGEK+GS P 
Sbjct: 120 ENSTPGAGAGVSFAGKKFLPEVTNKENKNFGEKSGSPPV 158


>Medtr5g010950.2 | RanBP1 domain protein | HC | chr5:3042380-3049094
           | 20130731
          Length = 345

 Score =  236 bits (601), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 111/135 (82%), Positives = 118/135 (87%), Gaps = 2/135 (1%)

Query: 24  FRNKRVMEGSLFDAHRAEPSQQPTVSTPPLDMKRAESSQQHVRALNTQFASWIQTQLKNH 83
           FRNKR+MEGSLFD HRAEPSQQ  ++TP LDMKRAESSQQHVRALNTQFASW+QTQLKNH
Sbjct: 12  FRNKRIMEGSLFDVHRAEPSQQLMMATPSLDMKRAESSQQHVRALNTQFASWVQTQLKNH 71

Query: 84  PDELWEDGVRDYLDHASSIMEKFSDVVSWLKANATKAEILAP--DGGTSFAGKKFFPEAT 141
           PDELWEDGVRDYLDHA+ IMEKFSDVV+WLKANATKAE   P    G SFAGKKF PE T
Sbjct: 72  PDELWEDGVRDYLDHATGIMEKFSDVVNWLKANATKAENSTPGAGAGVSFAGKKFLPEVT 131

Query: 142 NKENKTFGEKTGSTP 156
           NKENK FGEK+GS P
Sbjct: 132 NKENKNFGEKSGSPP 146