Miyakogusa Predicted Gene

Lj0g3v0356789.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0356789.1 tr|A9RSH0|A9RSH0_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_109595,34.18,9e-19,FAM175PLANT,FAM175 family, plant;
seg,NULL,CUFF.24569.1
         (206 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g014250.1 | BRCA1-A complex subunit abraxas-like protein, ...    85   4e-17

>Medtr4g014250.1 | BRCA1-A complex subunit abraxas-like protein,
           putative | HC | chr4:3970582-3973914 | 20130731
          Length = 274

 Score = 85.1 bits (209), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 37/60 (61%), Positives = 44/60 (73%)

Query: 142 SSHVHTHEYRAYQFRRAALSFDAKSINIVNIGPAFRGHYGSFSPNSPLPALNCSRSVRPL 201
           SSH+HTH+YR YQF   + SF+  SI I+NIGPAF GHYGSF PNSP P L+C  S  P+
Sbjct: 120 SSHIHTHDYRVYQFLSESQSFNPVSIEIINIGPAFWGHYGSFIPNSPFPVLDCQLSYLPM 179