Miyakogusa Predicted Gene
- Lj0g3v0356719.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0356719.1 Non Characterized Hit- tr|I1LUA7|I1LUA7_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,73.25,0,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
PORR,Plant organelle RNA recognition domain; seg,NU,CUFF.24555.1
(491 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g083350.1 | plant organelle RNA recognition domain protein... 570 e-163
Medtr7g117270.1 | plant organelle RNA recognition domain protein... 184 1e-46
Medtr3g105530.1 | plant organelle RNA recognition domain protein... 115 8e-26
Medtr7g107280.1 | plant organelle RNA recognition domain protein... 105 1e-22
Medtr7g088530.1 | plant organelle RNA recognition domain protein... 101 1e-21
Medtr8g089370.2 | plant organelle RNA recognition domain protein... 100 3e-21
Medtr8g089370.1 | plant organelle RNA recognition domain protein... 100 3e-21
Medtr3g029990.2 | ubiquitin carboxyl-terminal hydrolase family p... 99 1e-20
Medtr3g029990.1 | ubiquitin carboxyl-terminal hydrolase family p... 98 2e-20
Medtr6g033595.1 | plant organelle RNA recognition domain protein... 98 2e-20
Medtr1g019170.4 | plant organelle RNA recognition domain protein... 97 3e-20
Medtr1g019170.3 | plant organelle RNA recognition domain protein... 97 3e-20
Medtr1g019170.1 | plant organelle RNA recognition domain protein... 97 3e-20
Medtr1g019170.2 | plant organelle RNA recognition domain protein... 97 3e-20
Medtr3g030020.1 | plant organelle RNA recognition domain protein... 93 7e-19
Medtr1g098960.1 | plant organelle RNA recognition domain protein... 89 9e-18
Medtr0153s0070.2 | plant organelle RNA recognition domain protei... 85 2e-16
Medtr3g074730.1 | plant organelle RNA recognition domain protein... 81 2e-15
Medtr4g053720.1 | plant organelle RNA recognition domain protein... 78 2e-14
Medtr6g043850.1 | plant organelle RNA recognition domain protein... 77 5e-14
Medtr2g006740.1 | plant organelle RNA recognition domain protein... 77 5e-14
Medtr1g072550.1 | plant organelle RNA recognition domain protein... 77 6e-14
Medtr1g072550.2 | plant organelle RNA recognition domain protein... 77 6e-14
Medtr7g018630.1 | plant organelle RNA recognition domain protein... 75 2e-13
Medtr3g063230.1 | plant organelle RNA recognition domain protein... 74 4e-13
Medtr3g063230.2 | plant organelle RNA recognition domain protein... 73 8e-13
Medtr1g032380.1 | plant organelle RNA recognition domain protein... 72 8e-13
Medtr1g032040.1 | plant organelle RNA recognition domain protein... 72 8e-13
Medtr2g067960.1 | plant organelle RNA recognition domain protein... 68 2e-11
Medtr0153s0070.1 | plant organelle RNA recognition domain protei... 65 2e-10
>Medtr3g083350.1 | plant organelle RNA recognition domain protein |
HC | chr3:37619083-37621215 | 20130731
Length = 568
Score = 570 bits (1470), Expect = e-163, Method: Compositional matrix adjust.
Identities = 336/494 (68%), Positives = 368/494 (74%), Gaps = 8/494 (1%)
Query: 1 MALSLPSFC-NHGTVTSLSSSFLPVTTPSSFSINRKPKIHNLKNDTVSVSCSL-KTVRDG 58
MAL P N+G VTSL+S+FL TTPSSF +NRK K NLKN +VS+SCS KTVRD
Sbjct: 1 MALCHPFLVTNNGPVTSLNSTFLRGTTPSSFYVNRKLKTCNLKNVSVSISCSSVKTVRDR 60
Query: 59 TLDRHVVMKNRIRFVQKMKTLLLSKQKHYLPLHILSKCRSYLTLSQPHSILDMIHRYPSI 118
TLDRHVVM+NRIRFVQK+KTLLLSK KH+LP+ ILSKCR+YL+L +P S+L MIHRYPSI
Sbjct: 61 TLDRHVVMRNRIRFVQKLKTLLLSKPKHFLPIKILSKCRAYLSLHKPRSLLSMIHRYPSI 120
Query: 119 FELFTIPWPPTPPNATKLNHQLCVRLTPAAASLASEEMNLQSSLSTVLATKLQKXXXXXX 178
FELFTIPWPPTP NATKL QLCVRLTPAAA+LA+EE+NL+SS+STVLA KLQK
Sbjct: 121 FELFTIPWPPTPLNATKLYPQLCVRLTPAAAALAAEELNLKSSISTVLANKLQKLLMLSS 180
Query: 179 XXXXXXXXXXXXAPDLGLPPNFRSRLCNDHPDKFKIVDTSYGRALELVSWDINLAKPLPL 238
APDLGLPPNFRSRLCNDHPDKFKIVDTSYGRALELVSWD NLAKPLP
Sbjct: 181 HRRLLLAKLVHLAPDLGLPPNFRSRLCNDHPDKFKIVDTSYGRALELVSWDTNLAKPLP- 239
Query: 239 PSLAFQSHGL--IVDRPLKFXXXXXXXXXXXXXXHQYFLLKFEEMPEVCPYKDRVEDVAK 296
+SH L IVDRPLKF H+ +LLKFEEMPEVCPY + E K
Sbjct: 240 ---PRESHSLDLIVDRPLKFKQLRLRKGLNLKRPHRDYLLKFEEMPEVCPYNNPAESSTK 296
Query: 297 ESIVAEKRSCAIVREVLGMTIEKRTLIDHLSHFRKEFGLPNKLRGMVVRHPELFYVSLKG 356
ESI AEKR CA++REVLGMTIEKRTLIDHL+HFRKEFGLPNKLRGM+VRHPELFY SLKG
Sbjct: 297 ESIEAEKRCCAVIREVLGMTIEKRTLIDHLTHFRKEFGLPNKLRGMIVRHPELFYTSLKG 356
Query: 357 QRDSVLLVEGFDDKGNLLEKDDIYVLQDKWMDLARESKRMRQEGRKDRTHKDIGSLSDTN 416
QRDSV LVE FD+KGNLLEKD++ LQDKWMDLARESKRMR+E RK R K+ G LSD N
Sbjct: 357 QRDSVFLVERFDEKGNLLEKDEVLALQDKWMDLARESKRMRRERRKARIDKEFGRLSDVN 416
Query: 417 QNSDGSDADYDDNIEIDNFKDDYXXXXXXXXXXXXXXXXXXXYRNKFFANKNGEFWTTGH 476
QN D SD DYDDNIEIDNFKD Y N F NK GEFWT G
Sbjct: 417 QNPDDSDIDYDDNIEIDNFKDGYDDGFEDIFEDLDFEAEDYDLGNDLFDNKIGEFWTAGP 476
Query: 477 FPIQTGLDAELTPP 490
FPIQ G D E P
Sbjct: 477 FPIQNGSDTEEKQP 490
>Medtr7g117270.1 | plant organelle RNA recognition domain protein |
HC | chr7:48441549-48444050 | 20130731
Length = 530
Score = 184 bits (468), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 108/354 (30%), Positives = 181/354 (51%), Gaps = 19/354 (5%)
Query: 43 NDTVSVSCSLKTVRDGTLDRHVVMKNRIRFVQKMKTLLLSKQKHYLPLHILSKCRSYLTL 102
N + +S ++K ++ D + +++FV K++ +L+SK + L L K R L L
Sbjct: 75 NKIMPISAAVKRRKELPFDNVIQKDKKLKFVLKVRKILVSKPTRVMSLQELGKYRRELGL 134
Query: 103 SQPHSILDMIHRYPSIFELFTIPWPPTPPNATKLNHQLCVRLTPAAASLASEEMNLQSSL 162
+ ++ ++ R+P +FE+ + L ++T A L EE+ +++ +
Sbjct: 135 DKKRKLIVILRRFPGVFEIVEDGC-----------YSLKFKMTSEAEKLYLEELRVRNEM 183
Query: 163 STVLATKLQKXXXXXXXXXXXXXXXXXXAPDLGLPPNFRSRLCNDHPDKFKIVDTSYGRA 222
V+ TKL+K A DLGLP FR +C+ +P+ FK+V T G A
Sbjct: 184 EDVVVTKLRKLLMMPLEKRILLEKIGHLANDLGLPREFRDTICHRYPEFFKVVQTERGPA 243
Query: 223 LELVSWDINLAKPLPLPSLA------FQSHGLIVDRPLKFXXXXXXXXXXXXXXHQYFLL 276
LEL WD +LA S + LI+DR KF ++
Sbjct: 244 LELTHWDPHLAVSAAELSAEENRIREVEEQNLIIDRAPKFNRVKLPKGLSLSKGEMRKIM 303
Query: 277 KFEEMPEVCPYKDRVEDVAKESIVAEKRSCAIVREVLGMTIEKRTLIDHLSHFRKEFGLP 336
+F ++P + PY D + + EK +C ++ E+L +T+EKRTL+D+ +HFR+EF
Sbjct: 304 QFRDIPYISPYSD-FSMIGLNTPEKEKHACGVIHEILSLTLEKRTLVDNFTHFREEFRFS 362
Query: 337 NKLRGMVVRHPELFYVSLKGQRDSVLLVEGFDDKGNLLEKDDIYVLQDKWMDLA 390
+LRGM++RHP++FY+SLKG RDSV L E + D L++KD + ++++K L
Sbjct: 363 QQLRGMLIRHPDMFYISLKGDRDSVFLREAYRD-SQLVDKDRLLLVKEKLRSLV 415
>Medtr3g105530.1 | plant organelle RNA recognition domain protein |
HC | chr3:48661486-48663294 | 20130731
Length = 431
Score = 115 bits (289), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 104/369 (28%), Positives = 168/369 (45%), Gaps = 52/369 (14%)
Query: 88 LPLHILSKCRSYLTLSQPHSILDMIHRYPSIFELFTIPWPPTPPNATKLNHQLCVRLTPA 147
+P+ LS R ++L +PH I D + + P +FEL+ N L LT
Sbjct: 70 IPVRSLSHYRKQISLPKPHRISDFLRKTPKLFELYK-----------DRNGVLWCGLTQK 118
Query: 148 AASLASEEMNLQSSLSTVLATKLQKXXXXXXXXXXXXXXXXXXAPDLGLPPNFRSRLCND 207
A L E + A + + D GLP +FR+ +
Sbjct: 119 AEVLMEEHKRVIEENEDKAAEYVTRLLMMSVDKRVQLDKIAHFRRDFGLPMDFRTHWVHK 178
Query: 208 HPDKFKIVDTSYGRA--LELVSW-------DINLAKPLPLPSLAFQSH--GLI-VDRPLK 255
+P F++V S LELVSW +I + L + H GL+ + PLK
Sbjct: 179 YPQLFRVVKPSLDDVEFLELVSWNSEWAITEIEKKNKMILEGVTETEHTPGLLSLPFPLK 238
Query: 256 FXXXXXXXXXXXXXXHQYFLLK---FEEMPEVCPYKDRVEDVAKESIVAEKRSCAIVREV 312
F H Y+ K F+E + PY D + + S+ +KR+ A++ E+
Sbjct: 239 FPANFKRV-------HSYYGEKIKMFQERTYLSPYAD-AKGLKPGSLEFDKRAVAVMHEL 290
Query: 313 LGMTIEKRTLIDHLSHFRKEFGLPNKLRGMVVRHPELFYVSLKGQRDSVLLVEGFDDKGN 372
L T+EKR + DHL+HFR E +P KL ++++H +FYVS +G+R SV L E ++
Sbjct: 291 LSFTVEKRLVTDHLTHFRWELVMPQKLMRLLLKHCGIFYVSERGKRFSVFLTEAYEG-SE 349
Query: 373 LLEKDDIYVLQDKWMDLARESKRMRQEGRKDRTHKDIGSLSDTN-QNSDG-----SDADY 426
L+EK +++ ++K + L + GRK + D SD++ + DG SD+D
Sbjct: 350 LIEKSPLFLWREKLLSL------VGYRGRKKKFEAD----SDSDEEGGDGLRLLQSDSDV 399
Query: 427 DD-NIEIDN 434
+D N+E++
Sbjct: 400 EDLNVELEQ 408
>Medtr7g107280.1 | plant organelle RNA recognition domain protein |
HC | chr7:43760664-43762324 | 20130731
Length = 420
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 94/397 (23%), Positives = 170/397 (42%), Gaps = 34/397 (8%)
Query: 52 LKTVRDGTLDRHVVMKNRIRFVQKMKTLLLSKQKHYLPLHILSKCRSYLTLSQPHSILDM 111
LK V++ ++D + + ++ +K + +L S + L L+ P +L
Sbjct: 30 LKWVKNRSIDHIIDKETDLKAASLLKDAIKRSSTSFLTAKTFSDWQKLLGLTVP--VLRF 87
Query: 112 IHRYPSIFELFTIP-WPPTPPNATKLNHQLCVRLTPAAASLASEEMNLQSSLSTVLATKL 170
I RYP++F F P W P C RLT A L S+E ++ + + +
Sbjct: 88 IRRYPTLFHEFPHPRWNSLP----------CFRLTDTAQLLDSQEQSIYAVHENDIVERF 137
Query: 171 QKXXXXXXXXXXXXXXXXXXAPDLGLPPNFRSRLCNDHPDKFKIVDTSYG-RALELVSWD 229
K DLGLP F L +PDKF+ V G A+ LV W
Sbjct: 138 SKVLMMMKSRTVPIQSLYPLKFDLGLPDAFEKTLIPKYPDKFQFVKAGNGVSAIRLVDWC 197
Query: 230 INLAKPLPLPS------------LAFQSHGLIVDRPLKFXXXXXXXXXXXXXXHQYFLLK 277
A S F+ + P++F ++++ +
Sbjct: 198 DEFAVSALQKSNQCESENASDQYRDFKRGKTALVFPMRFPRGYGGQKKV-----RFWMDE 252
Query: 278 FEEMPEVCPYKDRVEDVAKESIVAEKRSCAIVREVLGMTIEKRTLIDHLSHFRKEFGLPN 337
F+++P + PY D + + +S + EKR ++ E L + + K+T ++L R+E LP+
Sbjct: 253 FQKLPYISPYADSSK-IDPKSDLMEKRVVGVLHEFLSLCLHKKTKRNYLRSLREELNLPH 311
Query: 338 KLRGMVVRHPELFYVSLKGQRDSVLLVEGFDDKGNLLEKDDIYVLQDKWMDLARESKRMR 397
K + R+P +FY+SLK + +V L EG+ +G L++ + +DK+ + R R
Sbjct: 312 KFTRIFTRYPGIFYLSLKCKTTTVTLREGY-ARGKLVDPHPLARHRDKFYHVMRTGLLYR 370
Query: 398 QEGRKDRTHKDIGSLSDTNQNSDGSDADYDDNIEIDN 434
+G + +D + D+ +N + D D ++ +E +
Sbjct: 371 GDGSL-KLGEDASLMLDSVENDEMGDGDSEEEVETSD 406
>Medtr7g088530.1 | plant organelle RNA recognition domain protein |
HC | chr7:34489084-34490337 | 20130731
Length = 417
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 94/428 (21%), Positives = 179/428 (41%), Gaps = 55/428 (12%)
Query: 21 FLPVTTPSSFS----INRKPKIHNLKNDTVSVSCSLK-TVRDGTLDRHVVMKNRIRFVQK 75
F TT SSFS N+K K T+S L+ +RD D+ ++ V K
Sbjct: 12 FQATTTISSFSPFFLFNQK----RWKKPTISAQTRLEDRIRDTHFDKLTTHFKKLSLVLK 67
Query: 76 MKTLLLSKQK-HYLPLHILSKCRSYLTLSQPHSILDMIHRYPSIFELFTIPWPPTPPNAT 134
+ L+ ++++ ++ L ++S+ ++ L+ ++ + +YP +F LF P+
Sbjct: 68 TRNLISNRKRGSFVSLQLMSRWKNITGLNV--TVTSFLQKYPHVFYLFVHPF-------- 117
Query: 135 KLNHQLCVRLTPAAASLASEEMNLQSSLSTVLATKLQKXXXXXXXXXXXXXXXXXXAPDL 194
+C R+T L E + + +++K +L
Sbjct: 118 --RRNMCCRMTKKMKELILLEEVVVRQHEVEVVKRVKKLLMMSVNGTLHLHALRLIRREL 175
Query: 195 GLPPNFRSRLCNDHPDKFKIVDTSYGRALELVSWDINLAKPLPLPSLA----------FQ 244
GLP +FR + + D+F++VD + LV WD L F+
Sbjct: 176 GLPCDFRESILGRYSDEFRLVDLE---IVALVGWDDELGMARVEEWREREYREKWLSEFE 232
Query: 245 SH-GLIVDRPLKFXXXXXXXXXXXXXXHQYFLLKFEEMPEVCPYKDRVEDVAKESIVAEK 303
+ ++ P F + +E C R E K
Sbjct: 233 TKFAFPINFPTGFKIERGFREKLKGWQRLSYTKPYERKNVKCGGVQRYE----------K 282
Query: 304 RSCAIVREVLGMTIEKRTLIDHLSHFRKEFGLPNKLRGMVVRHPELFYVSLKGQRDSVLL 363
R+ A++ E+L +T+EK +D L+HFR++F + +R +++RHP +FY+S KG +V L
Sbjct: 283 RAVAVLHELLSLTVEKMVEVDQLAHFRRDFDIEVNVRELLLRHPGIFYISTKGNAQTVFL 342
Query: 364 VEGFDDKGNLLEKDDIYVLQDKWMDLARESKRMRQEGRKDRTHKDIGSLSDTNQNSDGSD 423
E + +KG L+E + +Y ++ ++L +R +T + + S ++ + S+
Sbjct: 343 REAY-EKGGLIEPNPVYEVRRNMLELVLLGRR--------KTKQLLASCDESKEESNAVV 393
Query: 424 ADYDDNIE 431
+ D I+
Sbjct: 394 YEVDGEIK 401
>Medtr8g089370.2 | plant organelle RNA recognition domain protein |
HC | chr8:37138838-37141109 | 20130731
Length = 389
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 90/358 (25%), Positives = 162/358 (45%), Gaps = 18/358 (5%)
Query: 48 VSCSLKTVRDGTLDRHVVMKNRIRFVQKMKTLLLSKQKHYLPLHILSKCRSYLTLSQPHS 107
V+ LK V+D T+D VV K ++ + +++ S + Y+P++ LS+ R L L
Sbjct: 31 VNIKLKWVKDRTMDSVVVGKRDLKAAGILVSVIYSSSEDYVPIYRLSRHRGQLGLPDEIK 90
Query: 108 ILDMIHRYPSIF-ELFTIPWPPTPPNATKLNHQLCVRLTPAAASLASEEMNLQSSLSTVL 166
+ I RYP++F E +++ +P C L+ A + EE+++ S
Sbjct: 91 LAVFIRRYPNVFVESYSLDSGGSPVP--------CFGLSSEAMKIHREEVDILRENSLEF 142
Query: 167 ATKLQKXXXXXXXXXXXXXXXXXXAPDLGLPPNFRSRLCNDHPDKFKIV---DTSYGRAL 223
+L K DLGLP +++ +HP+KF V D G L
Sbjct: 143 RDRLCKLLMLTRDWMLPLQTIDQLKWDLGLPYDYQDSFVMNHPEKFSFVRLPDVRVG--L 200
Query: 224 ELVSWDINLAKPLPLPSLAFQSHGL-IVDRPLKFXXXXXXXXXXXXXXHQYFLLKFEEMP 282
+L+ WD LA + + Q I + L F ++ L +++++P
Sbjct: 201 KLLFWDDKLAVSELEKNASLQQQVEDIKNGTLAFPVSFTRGFGMKRKSMEW-LREWQKLP 259
Query: 283 EVCPYKDRVEDVAKESIVAEKRSCAIVREVLGMTIEKRTLIDHLSHFRKEFGLPNKLRGM 342
PY D + + V+EKR + E+L +T+ K+T ++S+ R+ LP K
Sbjct: 260 YTSPYAD-ASHLDIRTDVSEKRVVGVFHELLHLTLHKQTERKNVSNLRRPLALPQKFTKA 318
Query: 343 VVRHPELFYVSLKGQRDSVLLVEGFDDKGNLLEKDDIYVLQDKWMDLARESKRMRQEG 400
RHP +FY+S K +V+L E ++ G L++K + ++++ +L ++ R G
Sbjct: 319 FERHPGIFYISKKNDTQTVVLREAYNG-GELVQKHPLVKIREELANLLKKGLLDRSRG 375
>Medtr8g089370.1 | plant organelle RNA recognition domain protein |
HC | chr8:37138838-37141109 | 20130731
Length = 389
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 90/358 (25%), Positives = 162/358 (45%), Gaps = 18/358 (5%)
Query: 48 VSCSLKTVRDGTLDRHVVMKNRIRFVQKMKTLLLSKQKHYLPLHILSKCRSYLTLSQPHS 107
V+ LK V+D T+D VV K ++ + +++ S + Y+P++ LS+ R L L
Sbjct: 31 VNIKLKWVKDRTMDSVVVGKRDLKAAGILVSVIYSSSEDYVPIYRLSRHRGQLGLPDEIK 90
Query: 108 ILDMIHRYPSIF-ELFTIPWPPTPPNATKLNHQLCVRLTPAAASLASEEMNLQSSLSTVL 166
+ I RYP++F E +++ +P C L+ A + EE+++ S
Sbjct: 91 LAVFIRRYPNVFVESYSLDSGGSPVP--------CFGLSSEAMKIHREEVDILRENSLEF 142
Query: 167 ATKLQKXXXXXXXXXXXXXXXXXXAPDLGLPPNFRSRLCNDHPDKFKIV---DTSYGRAL 223
+L K DLGLP +++ +HP+KF V D G L
Sbjct: 143 RDRLCKLLMLTRDWMLPLQTIDQLKWDLGLPYDYQDSFVMNHPEKFSFVRLPDVRVG--L 200
Query: 224 ELVSWDINLAKPLPLPSLAFQSHGL-IVDRPLKFXXXXXXXXXXXXXXHQYFLLKFEEMP 282
+L+ WD LA + + Q I + L F ++ L +++++P
Sbjct: 201 KLLFWDDKLAVSELEKNASLQQQVEDIKNGTLAFPVSFTRGFGMKRKSMEW-LREWQKLP 259
Query: 283 EVCPYKDRVEDVAKESIVAEKRSCAIVREVLGMTIEKRTLIDHLSHFRKEFGLPNKLRGM 342
PY D + + V+EKR + E+L +T+ K+T ++S+ R+ LP K
Sbjct: 260 YTSPYAD-ASHLDIRTDVSEKRVVGVFHELLHLTLHKQTERKNVSNLRRPLALPQKFTKA 318
Query: 343 VVRHPELFYVSLKGQRDSVLLVEGFDDKGNLLEKDDIYVLQDKWMDLARESKRMRQEG 400
RHP +FY+S K +V+L E ++ G L++K + ++++ +L ++ R G
Sbjct: 319 FERHPGIFYISKKNDTQTVVLREAYNG-GELVQKHPLVKIREELANLLKKGLLDRSRG 375
>Medtr3g029990.2 | ubiquitin carboxyl-terminal hydrolase family
protein | HC | chr3:9456270-9464177 | 20130731
Length = 626
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 85/309 (27%), Positives = 144/309 (46%), Gaps = 33/309 (10%)
Query: 88 LPLHILSKCRSYLTLSQPHSILDMIHRYPSIFELFTIPWPPTPPNATKLNHQLCVRLTPA 147
+P+ L K + TL L+ I +YPS F+ HQ V LT
Sbjct: 59 IPIQTLQK--KFKTLDLQGKALNWISKYPSCFQF----------------HQDHVLLTKR 100
Query: 148 AASLASEEMNLQSSLSTVLATKLQKXXXXXXXXXXXXXXXXXXAPDLGLPPNFRSRLCND 207
L EE +L+ SL +V +L K LG P ++ +
Sbjct: 101 MMELVHEEQSLKDSLESVFVPRLAKLLMLSLNNCLNVMKINEIKNSLGFPDDYLIGIVAK 160
Query: 208 HPDKFKIVDTSYGRA---LELVSWDINLAKPLPLPSLAFQSHGLIVDRPLKFXXXXXXXX 264
+PD F+I + S R+ +EL+ W+ + A + +LA + +G+ V+
Sbjct: 161 YPDLFRIRNESGRRSSMVVELMKWNPDFAVS-EVEALAMK-NGVEVNFSCCLPSSWVKSL 218
Query: 265 XXXXXXHQYFLLKFEEMPEVCPYKDRVEDVAKESIVAEKRSCAIVREVLGMTIEKRTLID 324
+FE +P V PY D + + S EKR+ +V E+L +T+ K+ I
Sbjct: 219 EK--------FREFELVPYVSPYSDP-RGLVEGSKEMEKRNVGLVHELLSLTLWKKISIM 269
Query: 325 HLSHFRKEFGLPNKLRGMVVRHPELFYVSLKGQRDSVLLVEGFDDKGNLLEKDDIYVLQD 384
L HF++EF LP+K+ ++++HP +FYVS K + +VLL EG+ L++KD + V+++
Sbjct: 270 KLGHFKREFFLPDKVNVLLLKHPGIFYVSNKYRIYTVLLREGYVG-SQLVDKDPLVVVKE 328
Query: 385 KWMDLARES 393
K+ ++ +E
Sbjct: 329 KFGEIMQEG 337
>Medtr3g029990.1 | ubiquitin carboxyl-terminal hydrolase family
protein | HC | chr3:9456270-9462535 | 20130731
Length = 630
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 85/309 (27%), Positives = 144/309 (46%), Gaps = 33/309 (10%)
Query: 88 LPLHILSKCRSYLTLSQPHSILDMIHRYPSIFELFTIPWPPTPPNATKLNHQLCVRLTPA 147
+P+ L K + TL L+ I +YPS F+ HQ V LT
Sbjct: 59 IPIQTLQK--KFKTLDLQGKALNWISKYPSCFQF----------------HQDHVLLTKR 100
Query: 148 AASLASEEMNLQSSLSTVLATKLQKXXXXXXXXXXXXXXXXXXAPDLGLPPNFRSRLCND 207
L EE +L+ SL +V +L K LG P ++ +
Sbjct: 101 MMELVHEEQSLKDSLESVFVPRLAKLLMLSLNNCLNVMKINEIKNSLGFPDDYLIGIVAK 160
Query: 208 HPDKFKIVDTSYGRA---LELVSWDINLAKPLPLPSLAFQSHGLIVDRPLKFXXXXXXXX 264
+PD F+I + S R+ +EL+ W+ + A + +LA + +G+ V+
Sbjct: 161 YPDLFRIRNESGRRSSMVVELMKWNPDFAVS-EVEALAMK-NGVEVNFSCCLPSSWVKSL 218
Query: 265 XXXXXXHQYFLLKFEEMPEVCPYKDRVEDVAKESIVAEKRSCAIVREVLGMTIEKRTLID 324
+FE +P V PY D + + S EKR+ +V E+L +T+ K+ I
Sbjct: 219 EK--------FREFELVPYVSPYSDP-RGLVEGSKEMEKRNVGLVHELLSLTLWKKISIM 269
Query: 325 HLSHFRKEFGLPNKLRGMVVRHPELFYVSLKGQRDSVLLVEGFDDKGNLLEKDDIYVLQD 384
L HF++EF LP+K+ ++++HP +FYVS K + +VLL EG+ L++KD + V+++
Sbjct: 270 KLGHFKREFFLPDKVNVLLLKHPGIFYVSNKYRIYTVLLREGYVG-SQLVDKDPLVVVKE 328
Query: 385 KWMDLARES 393
K+ ++ +E
Sbjct: 329 KFGEIMQEG 337
>Medtr6g033595.1 | plant organelle RNA recognition domain protein |
HC | chr6:10945964-10948263 | 20130731
Length = 466
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 98/386 (25%), Positives = 172/386 (44%), Gaps = 53/386 (13%)
Query: 43 NDTVSVSCSLKTVRDGTLDRHVVMKNRIRFVQKMKTLLLSKQKHYLPLHILSKCRSYLTL 102
+ + S+ + +RD D ++ ++ + R V K + L+LS+ +P+ L +
Sbjct: 37 SQSTSIPKKQQRIRDHGYDNYMEIEKKTRKVLKFQNLILSEPNQSIPISRLETQAHRIGF 96
Query: 103 SQPHSILDMIHRYPSIFELFTIPWPPTPPNATKLNHQLCVRLT-PAAASLASEEMNLQSS 161
++ H + I ++ +FE+F P + L RLT A + E + L
Sbjct: 97 TR-HEAIAFILKFLHVFEIFEHP----------VQRILFCRLTRKAILQIEQERLALADQ 145
Query: 162 LSTVLATKLQKXXXXXXXXXXXXXXXXXXAPDLGLPPNFRSRLCNDHPDKFKIVDTSYGR 221
+ + T+L+K LGLP +F + +P+ F++VD R
Sbjct: 146 VERAV-TRLRKMIMMSNGLRLRLEHVRIARSALGLPDDFEYSVVLRYPEFFRLVDAKETR 204
Query: 222 --ALELVSWDINLAKPL--PLPSLAFQSHG---------LIVDRPLKFXXXXXXXXXXXX 268
+ELV +D LAK ++ G ++D P F
Sbjct: 205 NKYIELVEFDPKLAKCAIEDARERVYRERGSEAEDIRFSFLIDFPPGFKIS--------- 255
Query: 269 XXHQYF---LLKFEEMPEVCPYKDRVEDVAKESIVA----EKRSCAIVREVLGMTIEKRT 321
+YF + K++ +P PY+D V SI A EKR+ A + E+L +T+EK+
Sbjct: 256 ---KYFRIAMWKWQRLPYWSPYED-VLGYDLRSIEAQKRMEKRAVATIHELLSLTVEKKI 311
Query: 322 LIDHLSHFRKEFGLPNKLRGMVVRHPELFYVSLKGQRD---SVLLVEGFDDKGNLLEKDD 378
++ ++HFR LP KL+ +++H +FYVS +G +V L E + KG L+E +D
Sbjct: 312 TLERIAHFRMAMNLPKKLKEFLLQHQGIFYVSTRGNHGKLHTVFLREAY-SKGELVEPND 370
Query: 379 IYVLQDKWMDLARESKRMRQEGRKDR 404
+Y+ + K ++L S R + R DR
Sbjct: 371 LYLARRKLVELVLLSPR---KARVDR 393
>Medtr1g019170.4 | plant organelle RNA recognition domain protein |
HC | chr1:5720388-5724512 | 20130731
Length = 416
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 85/309 (27%), Positives = 144/309 (46%), Gaps = 33/309 (10%)
Query: 88 LPLHILSKCRSYLTLSQPHSILDMIHRYPSIFELFTIPWPPTPPNATKLNHQLCVRLTPA 147
+P+ L K + TL L+ I +YPS F+ HQ V LT
Sbjct: 59 IPIQTLQK--KFKTLDLQGKALNWISKYPSCFQF----------------HQDHVLLTKR 100
Query: 148 AASLASEEMNLQSSLSTVLATKLQKXXXXXXXXXXXXXXXXXXAPDLGLPPNFRSRLCND 207
L EE +L+ SL +V +L K LG P ++ +
Sbjct: 101 MMELVHEEQSLKDSLESVFVPRLAKLLMLSLNNCLNVMKINEIKNSLGFPDDYLIGIVAK 160
Query: 208 HPDKFKIVDTSYGRA---LELVSWDINLAKPLPLPSLAFQSHGLIVDRPLKFXXXXXXXX 264
+PD F+I + S R+ +EL+ W+ + A + +LA ++ G+ V+
Sbjct: 161 YPDLFRIRNESGRRSSMVVELMKWNPDFAVS-EVEALAMKN-GVEVNFSCCLPSSWVKSL 218
Query: 265 XXXXXXHQYFLLKFEEMPEVCPYKDRVEDVAKESIVAEKRSCAIVREVLGMTIEKRTLID 324
+FE +P V PY D + + S EKR+ +V E+L +T+ K+ I
Sbjct: 219 EKFH--------EFELVPYVSPYSD-PRGLVEGSKEMEKRNVGLVHELLSLTLWKKISIM 269
Query: 325 HLSHFRKEFGLPNKLRGMVVRHPELFYVSLKGQRDSVLLVEGFDDKGNLLEKDDIYVLQD 384
L HF++EF LP+K+ ++++HP +FYVS K + +VLL EG+ L++KD + V+++
Sbjct: 270 KLGHFKREFFLPDKVNVLLLKHPGIFYVSNKYRIYTVLLREGYVG-SQLVDKDPLVVVKE 328
Query: 385 KWMDLARES 393
K+ ++ +E
Sbjct: 329 KFGEIMQEG 337
>Medtr1g019170.3 | plant organelle RNA recognition domain protein |
HC | chr1:5720163-5724512 | 20130731
Length = 416
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 85/309 (27%), Positives = 144/309 (46%), Gaps = 33/309 (10%)
Query: 88 LPLHILSKCRSYLTLSQPHSILDMIHRYPSIFELFTIPWPPTPPNATKLNHQLCVRLTPA 147
+P+ L K + TL L+ I +YPS F+ HQ V LT
Sbjct: 59 IPIQTLQK--KFKTLDLQGKALNWISKYPSCFQF----------------HQDHVLLTKR 100
Query: 148 AASLASEEMNLQSSLSTVLATKLQKXXXXXXXXXXXXXXXXXXAPDLGLPPNFRSRLCND 207
L EE +L+ SL +V +L K LG P ++ +
Sbjct: 101 MMELVHEEQSLKDSLESVFVPRLAKLLMLSLNNCLNVMKINEIKNSLGFPDDYLIGIVAK 160
Query: 208 HPDKFKIVDTSYGRA---LELVSWDINLAKPLPLPSLAFQSHGLIVDRPLKFXXXXXXXX 264
+PD F+I + S R+ +EL+ W+ + A + +LA ++ G+ V+
Sbjct: 161 YPDLFRIRNESGRRSSMVVELMKWNPDFAVS-EVEALAMKN-GVEVNFSCCLPSSWVKSL 218
Query: 265 XXXXXXHQYFLLKFEEMPEVCPYKDRVEDVAKESIVAEKRSCAIVREVLGMTIEKRTLID 324
+FE +P V PY D + + S EKR+ +V E+L +T+ K+ I
Sbjct: 219 EKFH--------EFELVPYVSPYSD-PRGLVEGSKEMEKRNVGLVHELLSLTLWKKISIM 269
Query: 325 HLSHFRKEFGLPNKLRGMVVRHPELFYVSLKGQRDSVLLVEGFDDKGNLLEKDDIYVLQD 384
L HF++EF LP+K+ ++++HP +FYVS K + +VLL EG+ L++KD + V+++
Sbjct: 270 KLGHFKREFFLPDKVNVLLLKHPGIFYVSNKYRIYTVLLREGYVG-SQLVDKDPLVVVKE 328
Query: 385 KWMDLARES 393
K+ ++ +E
Sbjct: 329 KFGEIMQEG 337
>Medtr1g019170.1 | plant organelle RNA recognition domain protein |
HC | chr1:5720173-5724512 | 20130731
Length = 416
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 85/309 (27%), Positives = 144/309 (46%), Gaps = 33/309 (10%)
Query: 88 LPLHILSKCRSYLTLSQPHSILDMIHRYPSIFELFTIPWPPTPPNATKLNHQLCVRLTPA 147
+P+ L K + TL L+ I +YPS F+ HQ V LT
Sbjct: 59 IPIQTLQK--KFKTLDLQGKALNWISKYPSCFQF----------------HQDHVLLTKR 100
Query: 148 AASLASEEMNLQSSLSTVLATKLQKXXXXXXXXXXXXXXXXXXAPDLGLPPNFRSRLCND 207
L EE +L+ SL +V +L K LG P ++ +
Sbjct: 101 MMELVHEEQSLKDSLESVFVPRLAKLLMLSLNNCLNVMKINEIKNSLGFPDDYLIGIVAK 160
Query: 208 HPDKFKIVDTSYGRA---LELVSWDINLAKPLPLPSLAFQSHGLIVDRPLKFXXXXXXXX 264
+PD F+I + S R+ +EL+ W+ + A + +LA ++ G+ V+
Sbjct: 161 YPDLFRIRNESGRRSSMVVELMKWNPDFAVS-EVEALAMKN-GVEVNFSCCLPSSWVKSL 218
Query: 265 XXXXXXHQYFLLKFEEMPEVCPYKDRVEDVAKESIVAEKRSCAIVREVLGMTIEKRTLID 324
+FE +P V PY D + + S EKR+ +V E+L +T+ K+ I
Sbjct: 219 EKFH--------EFELVPYVSPYSD-PRGLVEGSKEMEKRNVGLVHELLSLTLWKKISIM 269
Query: 325 HLSHFRKEFGLPNKLRGMVVRHPELFYVSLKGQRDSVLLVEGFDDKGNLLEKDDIYVLQD 384
L HF++EF LP+K+ ++++HP +FYVS K + +VLL EG+ L++KD + V+++
Sbjct: 270 KLGHFKREFFLPDKVNVLLLKHPGIFYVSNKYRIYTVLLREGYVG-SQLVDKDPLVVVKE 328
Query: 385 KWMDLARES 393
K+ ++ +E
Sbjct: 329 KFGEIMQEG 337
>Medtr1g019170.2 | plant organelle RNA recognition domain protein |
HC | chr1:5720163-5724512 | 20130731
Length = 416
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 85/309 (27%), Positives = 144/309 (46%), Gaps = 33/309 (10%)
Query: 88 LPLHILSKCRSYLTLSQPHSILDMIHRYPSIFELFTIPWPPTPPNATKLNHQLCVRLTPA 147
+P+ L K + TL L+ I +YPS F+ HQ V LT
Sbjct: 59 IPIQTLQK--KFKTLDLQGKALNWISKYPSCFQF----------------HQDHVLLTKR 100
Query: 148 AASLASEEMNLQSSLSTVLATKLQKXXXXXXXXXXXXXXXXXXAPDLGLPPNFRSRLCND 207
L EE +L+ SL +V +L K LG P ++ +
Sbjct: 101 MMELVHEEQSLKDSLESVFVPRLAKLLMLSLNNCLNVMKINEIKNSLGFPDDYLIGIVAK 160
Query: 208 HPDKFKIVDTSYGRA---LELVSWDINLAKPLPLPSLAFQSHGLIVDRPLKFXXXXXXXX 264
+PD F+I + S R+ +EL+ W+ + A + +LA ++ G+ V+
Sbjct: 161 YPDLFRIRNESGRRSSMVVELMKWNPDFAVS-EVEALAMKN-GVEVNFSCCLPSSWVKSL 218
Query: 265 XXXXXXHQYFLLKFEEMPEVCPYKDRVEDVAKESIVAEKRSCAIVREVLGMTIEKRTLID 324
+FE +P V PY D + + S EKR+ +V E+L +T+ K+ I
Sbjct: 219 EKFH--------EFELVPYVSPYSD-PRGLVEGSKEMEKRNVGLVHELLSLTLWKKISIM 269
Query: 325 HLSHFRKEFGLPNKLRGMVVRHPELFYVSLKGQRDSVLLVEGFDDKGNLLEKDDIYVLQD 384
L HF++EF LP+K+ ++++HP +FYVS K + +VLL EG+ L++KD + V+++
Sbjct: 270 KLGHFKREFFLPDKVNVLLLKHPGIFYVSNKYRIYTVLLREGYVG-SQLVDKDPLVVVKE 328
Query: 385 KWMDLARES 393
K+ ++ +E
Sbjct: 329 KFGEIMQEG 337
>Medtr3g030020.1 | plant organelle RNA recognition domain protein |
HC | chr3:9470357-9471627 | 20130731
Length = 373
Score = 92.8 bits (229), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 88/323 (27%), Positives = 149/323 (46%), Gaps = 38/323 (11%)
Query: 80 LLSKQKHYLPLHILSKCRSYLTLS-----QPHSILDMIHRYPSIFELFTIPWPPTPPNAT 134
+ Q + + LH S R Y S + L+ I +YPS F+
Sbjct: 1 MFRHQTNIIILHRTSSKRHYCLWSCKNRPKLRISLNWISKYPSCFQF------------- 47
Query: 135 KLNHQLCVRLTPAAASLASEEMNLQSSLSTVLATKLQKXXXXXXXXXXXXXXXXXXAPDL 194
HQ V LT L EE +L+ SL +V +L K L
Sbjct: 48 ---HQDHVLLTKRMMELVHEEQSLKDSLESVFVPRLAKLLMFSLNNCLNVMKINEIKNSL 104
Query: 195 GLPPNFRSRLCNDHPDKFKIVDTSYGR----ALELVSWDINLAKPLPLPSLAFQSHGLIV 250
G P ++ + +PD F+I + S GR +EL+ W+ + + + +LA ++ G+ V
Sbjct: 105 GFPDDYLIGIVMKYPDLFRIRNES-GRISSMVVELMKWNPDFSVS-EVAALAMKN-GVEV 161
Query: 251 DRPLKFXXXXXXXXXXXXXXHQYFLLKFEEMPEVCPYKDRVEDVAKESIVAEKRSCAIVR 310
+ F + +FE +P V PY D + + S EKR+ +V
Sbjct: 162 N----FSYCLPSSWVKSLEKFR----EFELVPYVSPYSDP-RGLVEGSKEMEKRNVGLVH 212
Query: 311 EVLGMTIEKRTLIDHLSHFRKEFGLPNKLRGMVVRHPELFYVSLKGQRDSVLLVEGFDDK 370
E+L +T+ K+ I L HF++EF LP+K+ ++++HP +FYVS K + +VLL EG+
Sbjct: 213 ELLSLTLWKKISIMKLGHFKREFFLPDKVNVLLLKHPGIFYVSNKYRIYTVLLREGYVG- 271
Query: 371 GNLLEKDDIYVLQDKWMDLARES 393
L++KD + V+++K+ ++ +E
Sbjct: 272 SQLVDKDPLVVVKEKFGEIMQEG 294
>Medtr1g098960.1 | plant organelle RNA recognition domain protein |
HC | chr1:44599463-44600719 | 20130731
Length = 418
Score = 89.0 bits (219), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 144/307 (46%), Gaps = 35/307 (11%)
Query: 92 ILSKCRSYLTLSQPHSILDMIHRYPSIFELFTIPWPPTPPNATKLNHQLCVRLTPAAASL 151
IL+ + + TL L+ I +YPS F+ HQ V LT L
Sbjct: 63 ILTLQKKFKTLDLQGKALNWISKYPSCFQF----------------HQDHVLLTKRMMKL 106
Query: 152 ASEEMNLQSSLSTVLATKLQKXXXXXXXXXXXXXXXXXXAPDLGLPPNFRSRLCNDHPDK 211
EE +L+ SL +V +L K GLP ++ + + D
Sbjct: 107 VHEEQSLKDSLESVFVLRLAKLLMLSLNNCLNVMKINEIKNSFGLPDDYLIGIVAKYSDL 166
Query: 212 FKIVDTSYGRA---LELVSWDINLAKPLPLPSLAFQSHGLIVDRPLKFXXXXXXXXXXXX 268
F+I + S R+ +EL+ W+ + A + +LA ++ G+ V+ F
Sbjct: 167 FRIRNESGRRSSMVVELMKWNPDFAVS-EVEALAMKN-GVEVN----FSCCLPSSWVKSL 220
Query: 269 XXHQYFLLKFEEMPEVCPYKD--RVEDVAKESIVAEKRSCAIVREVLGMTIEKRTLIDHL 326
+ +FE +P V PY D R+ + +KE EKR+ +V E+L +T+ K+ I L
Sbjct: 221 EKFR----EFELVPYVSPYSDPRRLVEGSKE---MEKRNLGLVHELLSLTLWKKISIMKL 273
Query: 327 SHFRKEFGLPNKLRGMVVRHPELFYVSLKGQRDSVLLVEGFDDKGNLLEKDDIYVLQDKW 386
HF++EF LP+K+ ++++H +FYVS K + +VLL EG+ L++K+ + +++K+
Sbjct: 274 GHFKREFFLPDKVNVLLLKHHGIFYVSNKYRIYTVLLREGYVG-SQLVDKNPLVAVKEKF 332
Query: 387 MDLARES 393
+ +E
Sbjct: 333 GKIMQEG 339
>Medtr0153s0070.2 | plant organelle RNA recognition domain protein |
HC | scaffold0153:34902-38440 | 20130731
Length = 335
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 119/278 (42%), Gaps = 34/278 (12%)
Query: 88 LPLHILSKCRSYLTLSQPHSILDMIHRYPSIFELFTIPWPPTPPNATKLNHQLCVRLTPA 147
+P+ LS R ++L +PH I D + + P +FEL+ N L LT
Sbjct: 77 IPVRSLSHYRKQISLPKPHRISDFLRKTPKLFELYK-----------DRNGVLWCGLTQK 125
Query: 148 AASLASEEMNLQSSLSTVLATKLQKXXXXXXXXXXXXXXXXXXAPDLGLPPNFRSRLCND 207
A L E + A + + D GLP +FR+ +
Sbjct: 126 AEVLMEEHKRVIEENEDKAAEYVTRLLMMSVDKRVQLDKIAHFRRDFGLPMDFRTHWVHK 185
Query: 208 HPDKFKIVDTSYGRA--LELVSW-------DINLAKPLPLPSLAFQSH--GLI-VDRPLK 255
+P F++V S LELVSW +I + + + H GL+ + PLK
Sbjct: 186 YPQLFRVVKPSLDDVEFLELVSWNSEWAITEIEKKNKMIMEGVTETEHTPGLLSLPFPLK 245
Query: 256 FXXXXXXXXXXXXXXHQYFLLK---FEEMPEVCPYKDRVEDVAKESIVAEKRSCAIVREV 312
F H Y+ K F+E + PY D + + S+ +KR+ A++ E+
Sbjct: 246 FPANFKRV-------HSYYGEKIKMFQERTYLSPYAD-AKGLKPGSLEFDKRAVAVMHEL 297
Query: 313 LGMTIEKRTLIDHLSHFRKEFGLPNKLRGMVVRHPELF 350
L T+EKR + DHL+HFR E +P KL ++++H +F
Sbjct: 298 LSFTVEKRLVTDHLTHFRWELVMPQKLMRLLLKHCGIF 335
>Medtr3g074730.1 | plant organelle RNA recognition domain protein |
HC | chr3:33769164-33767587 | 20130731
Length = 404
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 84/334 (25%), Positives = 133/334 (39%), Gaps = 34/334 (10%)
Query: 70 IRFVQKMKTLLLSKQKHYLPLHILSKCRSYLTLSQPHSILDMIHRYPSIFELFTIPWPPT 129
+RFV + K L ++ +H L L K L + I I ++P +F +
Sbjct: 73 MRFVTRSKNYLSNQPEHVLQLDDAGKLHRELGFPRGRKIAKSIQQHPPLFLTYR------ 126
Query: 130 PPNATKLNHQLCVRLTPAAASLASEEMNLQSSLSTVLATKLQKXXXXXXXXXXXXXXXXX 189
+ ++ T L +EE ++ S+ K++K
Sbjct: 127 -----HTDGKMWFGFTDLMEELLAEEKSIMESMELDRVEKVRKLLMMSRFHRISLAKIHH 181
Query: 190 XAPDLGLPPNFRSRLCNDHPDKFKIVDTSYG------RALELVSWDINLAKPLPLPSLAF 243
G+P +FR R +P+ F+IVD R LELV+WD PL +++
Sbjct: 182 VRNLFGIPDDFRDR-VEKYPNYFRIVDDKNKDDGKKVRVLELVNWD-------PLLAVSA 233
Query: 244 QSHGLIVD-----RPLKFXXXXXXXXXXXXXXHQYFLLKFEEMPEVCPYKDRVE-DVAKE 297
+V+ R F + L +P V PY D + DV
Sbjct: 234 IEKEFMVNEDDAKRKFTFPVKHGKDLELGIEDERKMNL-LNALPLVSPYSDGAKFDVW-- 290
Query: 298 SIVAEKRSCAIVREVLGMTIEKRTLIDHLSHFRKEFGLPNKLRGMVVRHPELFYVSLKGQ 357
++ AEK ++ E L +T+EKR I HL F++EF L M+V+ P FY++
Sbjct: 291 TLEAEKYRVGLIHEFLSLTLEKRASIHHLVEFKEEFSLTKHTYHMLVKQPRAFYLAGTEM 350
Query: 358 RDSVLLVEGFDDKGNLLEKDDIYVLQDKWMDLAR 391
V L EG+D G L+ KD V +K A+
Sbjct: 351 NWVVFLKEGYDRNGVLIHKDPQVVFNEKVYKYAQ 384
>Medtr4g053720.1 | plant organelle RNA recognition domain protein |
HC | chr4:19386178-19384121 | 20130731
Length = 357
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 83/346 (23%), Positives = 152/346 (43%), Gaps = 31/346 (8%)
Query: 38 IHNLKNDTVSVSCSLKTVRDGTLDRHVVMKNRIRFVQKMKTLLLSKQKHYLPLHILSKCR 97
H + V+ +K VRD LD V+ + ++ V +K ++S L L+ S +
Sbjct: 8 FHRFDHIRTFVNARVKWVRDDYLDTAVLKEKNLKHVISLKNHIVSSPSKSLSLYNASMLK 67
Query: 98 SYLTLSQPHSILDMIHRYPSIFELFTIPWPPTPPNATKLNHQLCVRLTPAAASLASEEMN 157
+ L L P + ++ +Y +F F P P PP ++LT A +L EEM
Sbjct: 68 ASLNL--PMITIKLVEKYHHVFMQFQ-PSPGLPPR---------IKLTAQALALHKEEME 115
Query: 158 LQSSLSTV--LATKLQKXXXXXXXXXXXXXXXXXXAPDLGLPPNFRSRLCNDHPDKFKIV 215
+ +S + A +L + D+GLP ++ + L +PD F +
Sbjct: 116 VHNSRTNQEDAAQRLARLLMLAGMARLPIYVIEKLKWDMGLPHDYVTTLLAYYPDYFDVC 175
Query: 216 ---DTSYGR---ALELVSWDINLAKPLPLPSLAFQSHGLIVD-----RPLKFXXXXXXXX 264
D G+ ALELVSW K L + L + G D ++F
Sbjct: 176 VVEDPLSGKEVLALELVSWR----KELSVSELEKRVMGFNYDADKRRHDIQFPMFLPKSF 231
Query: 265 XXXXXXHQYFLLKFEEMPEVCPYKDRVEDVAKESIVAEKRSCAIVREVLGMTIEKRTLID 324
+ ++ ++ +P + PY++ + S AEK + AI+ E+L + + K+T +
Sbjct: 232 ALEKRV-KTWVEGWQTLPYISPYENAFH-LDSNSDQAEKWTVAILHELLSLLVSKKTESE 289
Query: 325 HLSHFRKEFGLPNKLRGMVVRHPELFYVSLKGQRDSVLLVEGFDDK 370
+L + + GL ++ + +V HP +FY+S K + + +L E + ++
Sbjct: 290 NLICYGECLGLGSRFKKALVHHPGIFYLSNKIRTQTAVLREAYRNE 335
>Medtr6g043850.1 | plant organelle RNA recognition domain protein |
LC | chr6:15115306-15109090 | 20130731
Length = 664
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 78/345 (22%), Positives = 155/345 (44%), Gaps = 23/345 (6%)
Query: 49 SCSLKTVRDGTLDRHVVMKNRIRFVQKMKTLLLSKQKHYLPLHILSKCRSYLTLSQPHSI 108
S + VRD LD V + ++ + + +L+ ++ LP+ I+ + RS L+ P
Sbjct: 25 SGTFTLVRDRGLDHAVEREKNLKPLLTLLSLINNEPTKSLPISIIKQSRS---LNLPFRP 81
Query: 109 LDMIHRYPSIFELFTIPWPPTPPNATKLNHQLCVRLTPAAASLASEEMNLQSS--LSTVL 166
++ I +YPS+FE F P+ V+LT A L ++E L +S +
Sbjct: 82 IEFIRKYPSVFEEFYNNGCTFEPH---------VKLTAKAIDLNADEKFLVASDVFKKDV 132
Query: 167 ATKLQKXXXXXXXXXXXXXXXXXXAPDLGLPPNFRSRLCNDHPDKFKIVDTSYGRALELV 226
A ++ K DLGLP ++ + + PD F++V LELV
Sbjct: 133 AVRVLKLLMIAKGNKIPLSVVDGLKWDLGLPDDYVKSVIPEFPDHFRVVGVDNNAVLELV 192
Query: 227 SWDINLAKPLPLPSLA--FQSHGLIVDRPLKFXXXXXXXXXXXXXXHQYFLLKFEEMPEV 284
W + + G + P++F ++ L++ V
Sbjct: 193 CWSKKHSVSFLEKKYGDKAKGQGKELGFPVQFSTGFEMDKKYEKWVKEWNGLRY-----V 247
Query: 285 CPYKDRVEDVAKESIVAEKRSCAIVREVLGMTIEKRTLIDHLSHFRKEFGLPNKLRGMVV 344
PY++ V +++ S ++K ++ E+L + + K+T D++ + GL ++ + +++
Sbjct: 248 SPYENGV-NLSGSSEESDKWVVGVLHEILNLLVSKKTEKDNVLMIGEWLGLASRFKRVIL 306
Query: 345 RHPELFYVSLKGQRDSVLLVEGFDDKGNLLEKDDIYVLQDKWMDL 389
+HP +FYVS K + +V+L +G+ +G L+E + + +++ L
Sbjct: 307 QHPGIFYVSSKNRMYTVVLRDGY-KRGLLVEDNPAMEFRRRYIHL 350
>Medtr2g006740.1 | plant organelle RNA recognition domain protein |
HC | chr2:689956-690252 | 20130731
Length = 56
Score = 76.6 bits (187), Expect = 5e-14, Method: Composition-based stats.
Identities = 36/44 (81%), Positives = 40/44 (90%)
Query: 295 AKESIVAEKRSCAIVREVLGMTIEKRTLIDHLSHFRKEFGLPNK 338
AKESI AEKR ++REVLGMTIE+RTLIDHL+HFRKEFGLPNK
Sbjct: 12 AKESIEAEKRCRVVIREVLGMTIEQRTLIDHLTHFRKEFGLPNK 55
>Medtr1g072550.1 | plant organelle RNA recognition domain protein |
HC | chr1:32201119-32198282 | 20130731
Length = 393
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 82/361 (22%), Positives = 152/361 (42%), Gaps = 15/361 (4%)
Query: 51 SLKTV--RDGTLDRHVVMKNRIRFVQKMKTLLLSKQKHYLPLHILSKCRSYLTLSQPHSI 108
SLK V +D +LD+ + R + ++ +L++ +PL L K R + L I
Sbjct: 30 SLKVVWRKDQSLDQAIEQDKRFKQCARVVKEVLNEPGQVIPLRYLEKRRQRMRLKV--KI 87
Query: 109 LDMIHRYPSIFELFTIPWPPTPPNATKLNHQLCVRLTPAAASLASEEMNLQSSLSTVLAT 168
+++ P +F+++ P L R++ EE + ++ +
Sbjct: 88 DTFLNQNPFLFDVYYDRIKPKTEPVKFL------RVSDHLLQFLQEEKRIYKENEPLIVS 141
Query: 169 KLQKXXXXXXXXXXXXXXXXXXAPDLGLPPNFRSRLCNDHPDKFKIVDT-SYGRA-LELV 226
KL K + G P +F L +P+ F++ G++ LELV
Sbjct: 142 KLCKLLMMSKDKIVSADKLLHVKREFGFPNDFLVDLVPRYPEYFRLTGLPGEGKSFLELV 201
Query: 227 SWDINLAKPLPLPSLAFQSHGLIVDRPLKFXXXXXXXXXXXXXXHQYFLLKFEEMPEVCP 286
+W+ AK + +S + F ++ + + E+ V P
Sbjct: 202 NWNPEFAKSVIERRAEEESRATGIRVRPSFNVKLPPGFVLKKEMREW-IRDWMELDYVSP 260
Query: 287 YKDRVEDVAKESIVAEKRSCAIVREVLGMTIEKRTLIDHLSHFRKEFGLPNKLRGMVVRH 346
Y+D V + + S EKRS + E+L +++ KR + L F E+ N RH
Sbjct: 261 YED-VSHLEQASREMEKRSVGVFHELLSLSLYKRVPVPILGKFCDEYRFSNAFSSAFTRH 319
Query: 347 PELFYVSLKGQRDSVLLVEGFDDKGNLLEKDDIYVLQDKWMDLARESKRMRQEGRKDRTH 406
+FY+SLKG ++ +L E +D L++ D + ++D++ +L +E R+R E K +
Sbjct: 320 SGIFYMSLKGGIETAMLREAYDG-DKLIDIDPLLQIKDRFAELLKEGWRLRAEQLKLKQE 378
Query: 407 K 407
K
Sbjct: 379 K 379
>Medtr1g072550.2 | plant organelle RNA recognition domain protein |
HC | chr1:32201119-32199304 | 20130731
Length = 393
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 82/361 (22%), Positives = 152/361 (42%), Gaps = 15/361 (4%)
Query: 51 SLKTV--RDGTLDRHVVMKNRIRFVQKMKTLLLSKQKHYLPLHILSKCRSYLTLSQPHSI 108
SLK V +D +LD+ + R + ++ +L++ +PL L K R + L I
Sbjct: 30 SLKVVWRKDQSLDQAIEQDKRFKQCARVVKEVLNEPGQVIPLRYLEKRRQRMRLKV--KI 87
Query: 109 LDMIHRYPSIFELFTIPWPPTPPNATKLNHQLCVRLTPAAASLASEEMNLQSSLSTVLAT 168
+++ P +F+++ P L R++ EE + ++ +
Sbjct: 88 DTFLNQNPFLFDVYYDRIKPKTEPVKFL------RVSDHLLQFLQEEKRIYKENEPLIVS 141
Query: 169 KLQKXXXXXXXXXXXXXXXXXXAPDLGLPPNFRSRLCNDHPDKFKIVDT-SYGRA-LELV 226
KL K + G P +F L +P+ F++ G++ LELV
Sbjct: 142 KLCKLLMMSKDKIVSADKLLHVKREFGFPNDFLVDLVPRYPEYFRLTGLPGEGKSFLELV 201
Query: 227 SWDINLAKPLPLPSLAFQSHGLIVDRPLKFXXXXXXXXXXXXXXHQYFLLKFEEMPEVCP 286
+W+ AK + +S + F ++ + + E+ V P
Sbjct: 202 NWNPEFAKSVIERRAEEESRATGIRVRPSFNVKLPPGFVLKKEMREW-IRDWMELDYVSP 260
Query: 287 YKDRVEDVAKESIVAEKRSCAIVREVLGMTIEKRTLIDHLSHFRKEFGLPNKLRGMVVRH 346
Y+D V + + S EKRS + E+L +++ KR + L F E+ N RH
Sbjct: 261 YED-VSHLEQASREMEKRSVGVFHELLSLSLYKRVPVPILGKFCDEYRFSNAFSSAFTRH 319
Query: 347 PELFYVSLKGQRDSVLLVEGFDDKGNLLEKDDIYVLQDKWMDLARESKRMRQEGRKDRTH 406
+FY+SLKG ++ +L E +D L++ D + ++D++ +L +E R+R E K +
Sbjct: 320 SGIFYMSLKGGIETAMLREAYDG-DKLIDIDPLLQIKDRFAELLKEGWRLRAEQLKLKQE 378
Query: 407 K 407
K
Sbjct: 379 K 379
>Medtr7g018630.1 | plant organelle RNA recognition domain protein |
HC | chr7:6083157-6084419 | 20130731
Length = 420
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 88/376 (23%), Positives = 160/376 (42%), Gaps = 28/376 (7%)
Query: 26 TPSSFSINRKPKIHNLKNDTVSVSCSLKTVRDGTLD--RHVVMKNRIRFVQKMKTLLLSK 83
+P S+ I P H + + V+V +K +D D H+ +++ V +K +
Sbjct: 25 SPFSYKIPCLPFSHIQRFNYVNVY--MKWKKDSYYDSIEHIHHSIQLKPVIALKNCIAQD 82
Query: 84 QKHYLPLHILSKCRSYLTLSQPHSILDMIHRYPSIFELFTIPWPPTPPNATKLNHQLCVR 143
+P+ +SK L L P + + +YPSIFE FT P K NH R
Sbjct: 83 PNGCIPISSVSK--RGLQLDVPMKVARFLRQYPSIFEEFTGP---------KYNHPW-FR 130
Query: 144 LTPAAASLASEEMNLQSSLSTVLATKLQKXXXXXXXXXXXXXXXXXXAPDLGLPPNFRSR 203
LTP AA + +E + L ++L+K LGLP +F
Sbjct: 131 LTPEAAEIDRDEKRVYEESREELRSRLKKMILMTKENVLPLKIIQGMQWYLGLPHDFLQH 190
Query: 204 LCNDHPDKFKIVDTSYG-RALELVSWDINLAKPLPLPSLAFQSHGLIVD----RPLKFXX 258
+ D F+ V+ G + L + S + + + G+ D ++F
Sbjct: 191 HEQNLDDSFRFVEMEDGLKGLAIESRE----RVYSVMEENAMKKGMYYDGSQTEAIEFPF 246
Query: 259 XXXXXXXXXXXXHQYFLLKFEEMPEVCPYKDRVEDVAKESIVAEKRSCAIVREVLGMTIE 318
+ L +F+++P + PY D ++ S +AEKR ++ E+L + I+
Sbjct: 247 FPSKALRMKTKIENW-LHEFQKLPYISPYDD-FSNLDPNSDIAEKRLIGVLHELLSLFID 304
Query: 319 KRTLIDHLSHFRKEFGLPNKLRGMVVRHPELFYVSLKGQRDSVLLVEGFDDKGNLLEKDD 378
L +K FG P K+ RHP +FY+S++ + +V+L E + ++ +E
Sbjct: 305 HSAERRKLLCLKKYFGFPQKVHRAFERHPHMFYMSMRNKTCTVILKEAYCNEL-AIENHP 363
Query: 379 IYVLQDKWMDLARESK 394
+ ++ +++ L +ES+
Sbjct: 364 LLSVRKRYIKLMKESE 379
>Medtr3g063230.1 | plant organelle RNA recognition domain protein |
HC | chr3:28611519-28613057 | 20130731
Length = 425
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 82/404 (20%), Positives = 167/404 (41%), Gaps = 34/404 (8%)
Query: 8 FCNHGTVTSLSSSFLPVTTPSSFSINRKPKIHNLKNDTVSVSCSLKTVRDGTLDRHV-VM 66
F ++T + + + T ++P +++ T S+ RD T ++ +
Sbjct: 6 FMKKRSLTQMGTHIVNFLTQHKHQNQQQPLCVFVRSKTTSIQYVNSRARDPTFEKLMDKY 65
Query: 67 KNRIRFVQKMKTLLLSKQKHYLPLHILSKCRSYLTLSQPHSILDMIHRYPSIFELFTIPW 126
KN ++ + +L + + + + LS L L++ + + ++P IF ++ P
Sbjct: 66 KNLLKVIAVHDLILANPKNRSVSVDFLSNLSQRLHLNRGATAF--LRKFPHIFNIYYEPS 123
Query: 127 PPTPPNATKLNHQLCVRLTPAAASLASEEMNLQSSLSTVLATKLQKXXXXXXXXXXXXXX 186
P C RLT AA ++ +E ++ ++ +L +
Sbjct: 124 KLQP---------FC-RLTDAALDVSRQEAEAINTSLPLVVERLVRILSMSASKTVPLRA 173
Query: 187 XXXXAPDLGLPPNFRSRLCNDHPDKFKIVDTSYGRALELVSWDINLAKPLPLPSLAFQSH 246
+LGLP +F + + F++ D A E + + L +P
Sbjct: 174 VFKVWRELGLPDDFEESVIAANSSVFQLCD-----ADEQNTHLLKLVGDVPSSGFRAAVE 228
Query: 247 GLIVDRPLKFXXXXXXXXXXXXXXHQY------------FLLKFEEMPEVCPYKDRVED- 293
V K +Y + +++ +P + PY+ E
Sbjct: 229 DWRVVECCKDESSVNSMEMRYSFKQRYPPGMRLSKNFRANVKEWQSLPYMGPYEMVSEKK 288
Query: 294 -VAKESIVA-EKRSCAIVREVLGMTIEKRTLIDHLSHFRKEFGLPNKLRGMVVRHPELFY 351
+K ++A EKR+ +IV E + +T+EK ++ +S FRK FG+ +R + + HP +FY
Sbjct: 289 KTSKAGMMAMEKRAVSIVHEFMSLTVEKMVEVEKISQFRKWFGIDFNIRDLFLDHPGIFY 348
Query: 352 VSLKGQRDSVLLVEGFDDKGNLLEKDDIYVLQDKWMDLARESKR 395
+S KG+R +V L E + ++G L+ + +Y + + +DL +R
Sbjct: 349 LSTKGKRHTVFLREAY-ERGCLIHPNPVYDARRRLLDLVALERR 391
>Medtr3g063230.2 | plant organelle RNA recognition domain protein |
HC | chr3:28611460-28613057 | 20130731
Length = 401
Score = 72.8 bits (177), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 74/122 (60%), Gaps = 4/122 (3%)
Query: 277 KFEEMPEVCPYKDRVED--VAKESIVA-EKRSCAIVREVLGMTIEKRTLIDHLSHFRKEF 333
+++ +P + PY+ E +K ++A EKR+ +IV E + +T+EK ++ +S FRK F
Sbjct: 247 EWQSLPYMGPYEMVSEKKKTSKAGMMAMEKRAVSIVHEFMSLTVEKMVEVEKISQFRKWF 306
Query: 334 GLPNKLRGMVVRHPELFYVSLKGQRDSVLLVEGFDDKGNLLEKDDIYVLQDKWMDLARES 393
G+ +R + + HP +FY+S KG+R +V L E + ++G L+ + +Y + + +DL
Sbjct: 307 GIDFNIRDLFLDHPGIFYLSTKGKRHTVFLREAY-ERGCLIHPNPVYDARRRLLDLVALE 365
Query: 394 KR 395
+R
Sbjct: 366 RR 367
>Medtr1g032380.1 | plant organelle RNA recognition domain protein |
HC | chr1:11495605-11496780 | 20130731
Length = 391
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 83/367 (22%), Positives = 155/367 (42%), Gaps = 16/367 (4%)
Query: 45 TVSVSCSLKTV--RDGTLDRHVVMKNRIRFVQKMKTLLLSKQKHYLPLHILSKCRSYLTL 102
T S+S SLK V +D +LD+ + R + ++ +L++ +PL L K R + L
Sbjct: 25 TRSIS-SLKVVWRKDPSLDQAIEQDKRFKQCFRVVKEVLNEPGQVIPLRYLEKRRQRMRL 83
Query: 103 SQPHSILDMIHRYPSIFELFTIPWPPTPPNATKLNHQLCVRLTPAAASLASEEMNLQSSL 162
I +++ P +F+++ + P + +R++ EE +
Sbjct: 84 KV--KIDTFLNQNPFLFDVY---YDRIKPKTKPVKF---LRVSDHLLQFLEEEKRIYKEN 135
Query: 163 STVLATKLQKXXXXXXXXXXXXXXXXXXAPDLGLPPNFRSRLCNDHPDKFKIVDT-SYGR 221
++ +KL K + G P +F L +P+ F++ G+
Sbjct: 136 EPLIVSKLCKLLMMSKDKVVSADKLLHVKREFGFPNDFLVDLVPRYPEYFRLTGLPGEGK 195
Query: 222 A-LELVSWDINLAKPLPLPSLAFQSHGLIVDRPLKFXXXXXXXXXXXXXXHQYFLLKFEE 280
+ LELV+W+ AK + +S + F ++ + + E
Sbjct: 196 SFLELVNWNPEFAKSVVEKRAEEESSATGIRVRPSFNVKLPPGFVLKKEMREW-IRDWME 254
Query: 281 MPEVCPYKDRVEDVAKESIVAEKRSCAIVREVLGMTIEKRTLIDHLSHFRKEFGLPNKLR 340
+ V PY+D V + S EKRS + E+L +++ KR + L F E+ N
Sbjct: 255 LDYVSPYED-VSHFEQSSREMEKRSVGVFHELLSLSLYKRIPVPILGKFCDEYRFSNAFS 313
Query: 341 GMVVRHPELFYVSLKGQRDSVLLVEGFDDKGNLLEKDDIYVLQDKWMDLARESKRMRQEG 400
RH +FY+SLKG ++ +L E ++ L+ D + ++D++ +L E R+R E
Sbjct: 314 SAFTRHSGIFYLSLKGGIETAMLREAYEG-DKLIHIDPLLQIKDRFAELLNEGWRLRAEQ 372
Query: 401 RKDRTHK 407
K + K
Sbjct: 373 LKLKQEK 379
>Medtr1g032040.1 | plant organelle RNA recognition domain protein |
HC | chr1:11336962-11338761 | 20130731
Length = 391
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 83/367 (22%), Positives = 155/367 (42%), Gaps = 16/367 (4%)
Query: 45 TVSVSCSLKTV--RDGTLDRHVVMKNRIRFVQKMKTLLLSKQKHYLPLHILSKCRSYLTL 102
T S+S SLK V +D +LD+ + R + ++ +L++ +PL L K R + L
Sbjct: 25 TRSIS-SLKVVWRKDPSLDQAIEQDKRFKQCFRVVKEVLNEPGQVIPLRYLEKRRQRMRL 83
Query: 103 SQPHSILDMIHRYPSIFELFTIPWPPTPPNATKLNHQLCVRLTPAAASLASEEMNLQSSL 162
I +++ P +F+++ + P + +R++ EE +
Sbjct: 84 KV--KIDTFLNQNPFLFDVY---YDRIKPKTKPVKF---LRVSDHLLQFLEEEKRIYKEN 135
Query: 163 STVLATKLQKXXXXXXXXXXXXXXXXXXAPDLGLPPNFRSRLCNDHPDKFKIVDT-SYGR 221
++ +KL K + G P +F L +P+ F++ G+
Sbjct: 136 EPLIVSKLCKLLMMSKDKVVSADKLLHVKREFGFPNDFLVDLVPRYPEYFRLTGLPGEGK 195
Query: 222 A-LELVSWDINLAKPLPLPSLAFQSHGLIVDRPLKFXXXXXXXXXXXXXXHQYFLLKFEE 280
+ LELV+W+ AK + +S + F ++ + + E
Sbjct: 196 SFLELVNWNPEFAKSVVEKRAEEESSATGIRVRPSFNVKLPPGFVLKKEMREW-IRDWME 254
Query: 281 MPEVCPYKDRVEDVAKESIVAEKRSCAIVREVLGMTIEKRTLIDHLSHFRKEFGLPNKLR 340
+ V PY+D V + S EKRS + E+L +++ KR + L F E+ N
Sbjct: 255 LDYVSPYED-VSHFEQSSREMEKRSVGVFHELLSLSLYKRIPVPILGKFCDEYRFSNAFS 313
Query: 341 GMVVRHPELFYVSLKGQRDSVLLVEGFDDKGNLLEKDDIYVLQDKWMDLARESKRMRQEG 400
RH +FY+SLKG ++ +L E ++ L+ D + ++D++ +L E R+R E
Sbjct: 314 SAFTRHSGIFYLSLKGGIETAMLREAYEG-DKLIHIDPLLQIKDRFAELLNEGWRLRAEQ 372
Query: 401 RKDRTHK 407
K + K
Sbjct: 373 LKLKQEK 379
>Medtr2g067960.1 | plant organelle RNA recognition domain protein |
HC | chr2:28431693-28434356 | 20130731
Length = 431
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 82/347 (23%), Positives = 148/347 (42%), Gaps = 39/347 (11%)
Query: 75 KMKTLLLSKQKHYLPLHILSKCRSYLTLSQPHSILDMIHRYPSIFELFTIPWPPTPPNAT 134
++ L+LS+ +P+ L + ++ H I ++P +FE+F
Sbjct: 34 QISELILSELNQSIPIPRLETLAHRIGFTR-HEASAFILKFPYVFEIFE----------H 82
Query: 135 KLNHQLCVRLT-PAAASLASEEMNLQSSLSTVLATKLQKXXXXXXXXXXXXXXXXXXAPD 193
+ L RLT + E + L + + T L+K
Sbjct: 83 LVQRILFCRLTRKTILQIEQERLALADQVGRTV-TCLRKMIMMSNGLRLRLEHVRIARSA 141
Query: 194 LGLPPNFRSRLCNDHPDKFKIVDTSYGR--ALELVSWDINLAKPL--PLPSLAFQSHGLI 249
LGL +F + +P+ F++VD R +ELV +D LA ++ G
Sbjct: 142 LGLRDDFEYLVVLRYPEFFRLVDAKETRNKYIELVEFDPKLATCAIEDARERVYRERGSE 201
Query: 250 VDRPLKFXXXXXXXXXXXXXXHQYF---LLKFEEMPEVCPYKD------RVEDVAKESIV 300
+ ++F +YF + K++ +P PY+D R + K
Sbjct: 202 AE-DIRFSFLIDFLPGFKIS--KYFRIAMWKWQSLPYWSPYEDVWGYDLRSPEAQKR--- 255
Query: 301 AEKRSCAIVREVLGMTIEKRTLIDHLSHFRKEFGLPNKLRGMVVRHPELFYVSLKGQRD- 359
EKR+ A + E+L +T+EK+ ++ ++HF+ LP KL+ +++H +FYVS +G
Sbjct: 256 MEKRAVATIHELLSLTVEKKITLERIAHFQMAMNLPKKLKEFLLQHQGIFYVSTRGNHGK 315
Query: 360 --SVLLVEGFDDKGNLLEKDDIYVLQDKWMDLARESKRMRQEGRKDR 404
+V L E + KG L+E +D+Y+ + K ++ S R + R DR
Sbjct: 316 LHTVFLREAY-RKGELVEPNDLYLARRKLAEVVLLSPR---KARVDR 358
>Medtr0153s0070.1 | plant organelle RNA recognition domain protein |
HC | scaffold0153:36398-37624 | 20130731
Length = 373
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 88/369 (23%), Positives = 144/369 (39%), Gaps = 87/369 (23%)
Query: 88 LPLHILSKCRSYLTLSQPHSILDMIHRYPSIFELFTIPWPPTPPNATKLNHQLCVRLTPA 147
+P+ LS R ++L +PH I D + + P +FEL+ N L LT
Sbjct: 47 IPVRSLSHYRKQISLPKPHRISDFLRKTPKLFELY-----------KDRNGVLWCGLTQK 95
Query: 148 AASLASEEMNLQSSLSTVLATKLQKXXXXXXXXXXXXXXXXXXAPDLGLPPNFRSRLCND 207
A L E + A + + D GLP +FR+ +
Sbjct: 96 AEVLMEEHKRVIEENEDKAAEYVTRLLMMSVDKRVQLDKIAHFRRDFGLPMDFRTHWVHK 155
Query: 208 HPDKFKIVDTSYGRA--LELVSW-------DINLAKPLPLPSLAFQSH--GLI-VDRPLK 255
+P F++V S LELVSW +I + + + H GL+ + PLK
Sbjct: 156 YPQLFRVVKPSLDDVEFLELVSWNSEWAITEIEKKNKMIMEGVTETEHTPGLLSLPFPLK 215
Query: 256 FXXXXXXXXXXXXXXHQYFLLK---FEEMPEVCPYKDRVEDVAKESIVAEKRSCAIVREV 312
F H Y+ K F+E + PY D + + S+ +KR+ A++ E+
Sbjct: 216 F-------PANFKRVHSYYGEKIKMFQERTYLSPYAD-AKGLKPGSLEFDKRAVAVMHEL 267
Query: 313 LGMTIEKRTLIDHLSHFRKEFGLPNKLRGMVVRHPELFYVSLKGQRDSVLLVEGFDDKGN 372
L T+EKR G+R SV L E ++
Sbjct: 268 LSFTVEKR-----------------------------------GKRFSVFLTEAYEG-SE 291
Query: 373 LLEKDDIYVLQDKWMDLARESKRMRQEGRKDRTHKDIGSLSDTN-QNSDG-----SDADY 426
L+EK +++ ++K + L + GRK + D SD++ + DG SD+D
Sbjct: 292 LIEKSPLFLWREKLLSL------VGYRGRKKKFEAD----SDSDEEGGDGLRLLQSDSDE 341
Query: 427 DD-NIEIDN 434
+D N+E++
Sbjct: 342 EDLNVELEQ 350