Miyakogusa Predicted Gene

Lj0g3v0356229.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0356229.1 Non Characterized Hit- tr|C5XFJ9|C5XFJ9_SORBI
Putative uncharacterized protein Sb03g043330
OS=Sorghu,28.35,7e-19,seg,NULL; LEA_2,Late embryogenesis abundant
protein, LEA-14,CUFF.24522.1
         (247 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g096680.1 | late embryogenesis abundant protein | HC | chr...   258   3e-69
Medtr8g089695.1 | transmembrane protein, putative | HC | chr8:37...   146   2e-35
Medtr8g072140.1 | late embryogenesis abundant protein | HC | chr...    65   9e-11
Medtr7g106120.1 | late embryogenesis abundant protein | LC | chr...    53   3e-07
Medtr2g011350.1 | late embryogenesis abundant protein | HC | chr...    52   7e-07
Medtr5g025760.1 | late embryogenesis abundant protein | HC | chr...    51   9e-07
Medtr7g106100.1 | late embryogenesis abundant protein | HC | chr...    49   5e-06
Medtr7g106000.1 | harpin-induced-like protein | HC | chr7:430499...    49   5e-06

>Medtr5g096680.1 | late embryogenesis abundant protein | HC |
           chr5:42286627-42285582 | 20130731
          Length = 238

 Score =  258 bits (660), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 122/227 (53%), Positives = 170/227 (74%), Gaps = 4/227 (1%)

Query: 21  LSLDQIVISKQPTNHLSLEPNSSNSAKTKLSRPPALRFQRTNPIIWFASVLCLIFSLVLI 80
           +S +  +ISKQP N   L   SS     KL+       Q+T PI+WFA++LC IFS  LI
Sbjct: 16  ISPETPIISKQPKNQHPLRTRSSR----KLAILKVDDQQKTKPIVWFAAILCFIFSFTLI 71

Query: 81  FFGVATLTIFLGIKPRNPTFDIPNANLNALYFDSPQYFNGDFTLLANFTNPNTKIDVSFE 140
           FFG+AT+  +L +KP NP FDI NA+LN +YFDS QYFNGDF L ANF+NPN K+ V FE
Sbjct: 72  FFGIATIICYLTLKPSNPLFDISNASLNVVYFDSKQYFNGDFALQANFSNPNRKVHVKFE 131

Query: 141 SLDIELFFSDRIISSQSIEPFTQRRRESRLQSLHFISSLVFLPKDLGVMLEKQVQSNLVN 200
           SL I+LF+S+R+I+SQSI+PFTQ+ +E+R +++ FIS+L+F+P+++GV L++++Q+N ++
Sbjct: 132 SLYIQLFYSNRVIASQSIKPFTQKPKETRYETVRFISTLLFMPQEVGVRLQRELQNNRLS 191

Query: 201 YNVRGTFKVRVTLGLIHLSYLLHSRCQIEMTSPPTGGLVARKCITKR 247
              +GTFKV+V + ++H S+ LHS CQIEMT PP G LVAR+CIT R
Sbjct: 192 CYAKGTFKVKVNMWILHSSFWLHSVCQIEMTGPPNGSLVARQCITTR 238


>Medtr8g089695.1 | transmembrane protein, putative | HC |
           chr8:37336287-37334903 | 20130731
          Length = 394

 Score =  146 bits (369), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 81/197 (41%), Positives = 118/197 (59%), Gaps = 4/197 (2%)

Query: 55  ALRF---QRTNPIIWFASVLCLIFSLVLIFFGVATLTIFLGIKPRNPTFDIPNANLNALY 111
            +RF   Q++ P+ W  + LC+IF L++I  G+  L ++L  +P+ P FD+ +  LNA Y
Sbjct: 198 GIRFPKEQKSPPLTWMGACLCVIFWLIIIIGGIIVLIVYLVFRPQIPHFDVSSVTLNAAY 257

Query: 112 FDSPQYFNGDFTLLANFTNPNTKIDVSFESLDIELFFSDRIISSQSIEPFTQRRRESRLQ 171
            D     N D T+L NFTNPN K+ V F S+ I L++   +I++Q +EPF+  R +SR  
Sbjct: 258 LDVGYLLNADLTMLTNFTNPNKKVHVDFSSVIIYLYYGSTLIATQYVEPFSAARVQSRFA 317

Query: 172 SLHFISSLVFLPKDLGVMLEKQVQSNLVNYNVRGTFKVRVTLGLI-HLSYLLHSRCQIEM 230
            +H ++S V LP +    L KQ++SN V   VRG F+ R  LG I   SY L+ RC I +
Sbjct: 318 YIHMVTSQVQLPLNEAQRLVKQMESNGVLLEVRGVFRARSKLGTILRYSYNLYGRCSIMV 377

Query: 231 TSPPTGGLVARKCITKR 247
             PP G ++ RKC TKR
Sbjct: 378 ARPPEGIMMKRKCRTKR 394


>Medtr8g072140.1 | late embryogenesis abundant protein | HC |
           chr8:30451261-30450505 | 20130731
          Length = 203

 Score = 64.7 bits (156), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 41/188 (21%), Positives = 80/188 (42%), Gaps = 2/188 (1%)

Query: 60  RTNPIIWFASVLCLIFSLVLIFFGVATLTIFLGIKPRNPTFDIPNANLNALYFDSPQYFN 119
            T P +W A+++C IF++ +   G+     ++ I PR P   + NA+L+ L  D      
Sbjct: 15  HTKPFVWLAAIICTIFAIAVTITGIVVFIGYILIHPRAPIISVTNAHLDLLRNDHAGLLQ 74

Query: 120 GDFTLLANFTNPNTKIDVSFESLDIELFFSDRIISSQSIEPFTQRRRESRLQSLHFISSL 179
              +++    N N K   +F  +   L F  + I+    + F   +  +        SS 
Sbjct: 75  TQLSIVVTAYNGNAKAHATFSKITFSLSFQGQGIAMLVADSFDVPKNSTNDLRYVVQSSS 134

Query: 180 VFLPKDLGVMLEKQVQSNLVNYNVRGTFKVRVTLG-LIHLSYLLHSRCQIEMTSPPTGGL 238
           + L  D    +++  + N + ++ +G  + R  +G    + Y  H  C ++   P  G  
Sbjct: 135 IPLTPDQIDKIDESWKRNEIGFDFKGAARTRWRIGPFRSVKYSCHLNCYLKF-RPLNGSY 193

Query: 239 VARKCITK 246
           +  KC +K
Sbjct: 194 IHSKCSSK 201


>Medtr7g106120.1 | late embryogenesis abundant protein | LC |
           chr7:43107075-43106467 | 20130731
          Length = 202

 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 13/117 (11%)

Query: 69  SVLCLIFSL---VLIFFGVATLTIFLGIKPRNPTFDIPNANLNALYFDSPQYF---NGDF 122
           S LCLI S+   +++  GV  L ++   +PR P   +  A L +L   S Q +     D 
Sbjct: 13  SCLCLILSIMTAIVVSLGVIILIMYFIFRPRYPEIRVDTAQLTSLIVTSNQQYLTAKWDI 72

Query: 123 TLLANFTNPNTKIDVSFESLDIELFFSDR-----IISSQSIEPFTQRRRESRLQSLH 174
           T +A  +NPN K+D+++ ++ + +F+ ++      ++   I+ F Q ++   L  +H
Sbjct: 73  TFIA--SNPNKKLDITYNAVSVGVFYGEKKDNFGFLAKPHIQSFYQPKKSKTLFGVH 127


>Medtr2g011350.1 | late embryogenesis abundant protein | HC |
           chr2:2751617-2750551 | 20130731
          Length = 202

 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/141 (22%), Positives = 74/141 (52%), Gaps = 14/141 (9%)

Query: 83  GVATLTIFLGIKPRNPTFDIPNANLNALYFDSPQYFNGDFTLLANFTNPNTKIDVSFESL 142
           G+A L  +L ++P+N  + + +A+++        +   +F       NPN+K+ + ++S+
Sbjct: 36  GLAVLISWLVVRPKNLQYSVEDASIHNFNLTDANHLYANFDFTIRSKNPNSKVSLYYDSI 95

Query: 143 DIELFFSDRIISSQSIEPFTQ-----RRRESRL--QSLHFISSLVFLPKDLGVMLEKQVQ 195
           ++ + + D+ +++ +++PF Q      R  +RL  Q++    S   +PKDL   LE+   
Sbjct: 96  EVSVRYEDQTLATNAVQPFFQPHKNVTRMHARLTAQTVALYDS---VPKDLK--LERSSG 150

Query: 196 SNLVNYNVRGTFKVRVTLGLI 216
              ++  +R   ++R  +GL+
Sbjct: 151 DIALDVFIRA--RIRFKVGLL 169


>Medtr5g025760.1 | late embryogenesis abundant protein | HC |
           chr5:10506907-10505986 | 20130731
          Length = 233

 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 82/187 (43%), Gaps = 2/187 (1%)

Query: 61  TNPIIWFASVLCLIFSLVLIFFGVATLTIFLGIKPRNPTFDIPNANLNALYFDSPQYFNG 120
           TN  IW  ++LC I ++ ++  GV     ++ I PR PT  I NA+L+    D       
Sbjct: 46  TNIFIWLLAILCTIIAIGVVIGGVVVFIGYIVIHPRVPTISIANAHLDLFRNDYAGLLQT 105

Query: 121 DFTLLANFTNPNTKIDVSFESLDIELFFSDRIISSQSIEPFTQRRRESRLQSLHFISSLV 180
              +     N N K   +F ++ ++L +  + I+    +PF   +  SR       SS +
Sbjct: 106 QVNIRVMAKNGNFKAHATFSNIKLKLSYEGQGIAFMVADPFDVPKNSSRYLDYVVQSSSI 165

Query: 181 FLPKDLGVMLEKQVQSNLVNYNVRGTFKVRVTLG-LIHLSYLLHSRCQIEMTSPPTGGLV 239
            L  D    ++   + N+V ++++G  + +  +G      +     CQ++   P  G  +
Sbjct: 166 PLTPDQIEDVDDTWKRNIVGFDLKGDARTQWRIGPFGSFKFGCKLECQLKF-HPLNGSYI 224

Query: 240 ARKCITK 246
             +C ++
Sbjct: 225 PSRCTSQ 231


>Medtr7g106100.1 | late embryogenesis abundant protein | HC |
           chr7:43100020-43099253 | 20130731
          Length = 255

 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/196 (22%), Positives = 86/196 (43%), Gaps = 18/196 (9%)

Query: 48  TKLSRPPALRFQ-RTNPIIWFASVLCLIFSL---VLIFFGVATLTIFLGIKPRNPTFDIP 103
           T   + PA  F     P     S LC   S+   ++  FG+ +L  +  +KPR P F + 
Sbjct: 46  TTFYQAPATTFTYEEEPPAVVRSFLCGFISVMTAIVALFGLISLIGYFVLKPRIPEFSVN 105

Query: 104 NANLNALYFDSPQYFNGDFTLLANFTNPNTKIDVSFESLDIELFFSDR---IISSQSIEP 160
           +A+L +         N  + +    +NPN K+D++++++   +F+ D    +++   + P
Sbjct: 106 SASLTSFNLTGSG-LNAKWDITLIVSNPNKKLDITYDAVAASVFYGDDEYGVLAYTRLAP 164

Query: 161 FTQRRRESRLQSLHFISSLVFLPKDLGVMLEKQVQSNLVNYNVRGTFKVRVTLG-LIHLS 219
           F Q      +  + F        + L   ++  V   + +  VRG  +  V +  LI + 
Sbjct: 165 FHQPTHSKTMLRVQF--------EVLDYFVDNSVSFGITDGRVRGFVQFGVVVNTLIKMD 216

Query: 220 YLLH-SRCQIEMTSPP 234
            L H S  ++++T  P
Sbjct: 217 GLFHPSEYRLKVTCKP 232


>Medtr7g106000.1 | harpin-induced-like protein | HC |
           chr7:43049967-43048978 | 20130731
          Length = 227

 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 79/179 (44%), Gaps = 22/179 (12%)

Query: 69  SVLCLIFSL-------VLIFFGVATLTIFLGIKPRNPTFDIPNANLNALYFDSPQYFNG- 120
           S  C +FS        +++  G+A L  +L ++PR   F +  ANL    FD   Y N  
Sbjct: 33  SCCCCLFSFFWKLLIALIVLAGLAVLIFYLVVQPRGFKFYVDEANLTE--FD---YSNNT 87

Query: 121 -DFTLLANFT--NPNTKIDVSFESLDIELFFSDRIISSQSI----EPFTQRRRESRLQSL 173
            ++ ++ NFT  NPN K+++ ++ ++   F+     ++  +      F Q ++ S   S 
Sbjct: 88  LNYNMVLNFTARNPNKKLNIYYDKVEARAFYEGSRFANVDVITHMNSFRQYKKSSNPMSA 147

Query: 174 HFISSLVF-LPKDLGVMLEKQVQSNLVNYNVRGTFKVRVTLG-LIHLSYLLHSRCQIEM 230
            F    VF L  D      K     + +  VR  F++R  LG LI   Y    +C  ++
Sbjct: 148 VFSGQHVFVLDSDQVSEFNKDKSDEVYDIYVRLYFRIRFRLGDLISGDYKPKVKCDFKV 206