Miyakogusa Predicted Gene

Lj0g3v0356019.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0356019.2 Non Characterized Hit- tr|J3LSI4|J3LSI4_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB03G4,52.53,5e-17,coiled-coil,NULL; seg,NULL,CUFF.24538.2
         (123 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g106075.1 | photosystem I reaction center subunit N | HC |...   135   6e-33
Medtr3g008630.1 | photosystem I reaction center subunit N | HC |...   127   2e-30

>Medtr1g106075.1 | photosystem I reaction center subunit N | HC |
           chr1:48006741-48007669 | 20130731
          Length = 131

 Score =  135 bits (341), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 77/127 (60%), Positives = 87/127 (68%), Gaps = 9/127 (7%)

Query: 1   MALTVTVNKYASSNLQAVHRTQEKAGNQTTPTL-STNGEVGRRGLILSTAIATT--QVPE 57
           MALTVTVNKYASSN+QAVH  +     Q  PTL STN E GRRGL+LST IA T  Q PE
Sbjct: 10  MALTVTVNKYASSNVQAVHNRK-----QANPTLRSTNLEFGRRGLVLSTVIAATATQDPE 64

Query: 58  SRTQLLXXXXXXXXXXXXXXXXXRLDSYYKRNYKDYFELMEGTLKGK-DGELSETEKGIR 116
           SRT LL                 R+DSYYKRNYKDYFE +EG L+GK +G+LSE EKGI 
Sbjct: 65  SRTLLLQKYLKKTEENKEKNDKERVDSYYKRNYKDYFEFVEGGLQGKEEGKLSEAEKGIL 124

Query: 117 DWLQSNK 123
           DWL++NK
Sbjct: 125 DWLKANK 131


>Medtr3g008630.1 | photosystem I reaction center subunit N | HC |
           chr3:1603422-1604157 | 20130731
          Length = 131

 Score =  127 bits (319), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 73/127 (57%), Positives = 83/127 (65%), Gaps = 9/127 (7%)

Query: 1   MALTVTVNKYASSNLQAVHRTQEKAGNQTTPTL-STNGEVGRRGLILSTAIATT--QVPE 57
           MALTVTVNKY SSN+QAVH  +     Q  PTL STN E GRRGL+LS  IA T  Q PE
Sbjct: 10  MALTVTVNKYTSSNVQAVHNRK-----QANPTLRSTNMEFGRRGLVLSIVIAATATQDPE 64

Query: 58  SRTQLLXXXXXXXXXXXXXXXXXRLDSYYKRNYKDYFELMEGTLKGK-DGELSETEKGIR 116
           SRT LL                 R+DS YKRNYKDYFE +EG L+ K +G+LSE EKGI 
Sbjct: 65  SRTLLLQKYLKKTQENKEKNDKERVDSNYKRNYKDYFEFIEGGLQAKEEGKLSEAEKGIL 124

Query: 117 DWLQSNK 123
           DWL++NK
Sbjct: 125 DWLKANK 131