Miyakogusa Predicted Gene

Lj0g3v0355159.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0355159.1 tr|F6J9S0|F6J9S0_DROME CG2446 (Fragment)
OS=Drosophila melanogaster GN=CG2446 PE=4 SV=1,41.32,1e-18,seg,NULL;
SUBFAMILY NOT NAMED,NULL; UNCHARACTERIZED,NULL,CUFF.24461.1
         (220 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g017290.1 | DNA-binding protein | HC | chr1:4777014-477956...   345   2e-95

>Medtr1g017290.1 | DNA-binding protein | HC | chr1:4777014-4779568 |
           20130731
          Length = 221

 Score =  345 bits (884), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 169/211 (80%), Positives = 189/211 (89%), Gaps = 1/211 (0%)

Query: 1   MDFGCSEVSVWQEALSAYPSRIQSLSLHKNKPDLVSLDEFYRNELPSLLHQRNPNPFITT 60
           MDFGC +V+VW+EALS Y S++QSLSL KNKP+LVSL++FY NELPSL+HQRNPNPFITT
Sbjct: 1   MDFGCKDVNVWKEALSTYTSQVQSLSLSKNKPNLVSLNQFYCNELPSLIHQRNPNPFITT 60

Query: 61  LELSKLMQWKLTRGKSRPRLLNFVSSLDDAVVKSASEKAFQCLPDVSKAVTELSALKGVG 120
            ELSKLMQWKLTRGK RPRLL+FVS+LD+ VVK ASEKAF+ LPD+SKA++ELSALKGVG
Sbjct: 61  QELSKLMQWKLTRGKWRPRLLDFVSALDEDVVKRASEKAFESLPDISKAISELSALKGVG 120

Query: 121 PATASAVLAAFTPELAPFMSDEAMEAALGNSKYYTLKQYLIFVNKLQTKAKELSSEGASF 180
           PATASAVLAAF P L PFMSDEAM+AALGNSK YTLKQYLIF NKLQ KAKELSSE  SF
Sbjct: 121 PATASAVLAAFAPNLTPFMSDEAMQAALGNSKDYTLKQYLIFANKLQEKAKELSSEDTSF 180

Query: 181 TPSDVERALWSCAVGKSSASQSNQDP-KTNP 210
           TPSDVERALWSCA+ K SA +SN+DP KTNP
Sbjct: 181 TPSDVERALWSCAIRKLSAPKSNKDPEKTNP 211